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At least 109 records · Page 6

RESOLVED DEPLETION ZONES AND SPATIAL DIFFERENTIATION OF N{sub 2}H{sup +} AND N{sub 2}D{sup +}

We present a study on the spatial distribution of N{sub 2}D{sup +} and N{sub 2}H{sup +} in 13 protostellar systems. Eight of thirteen objects observed with the IRAM 30 m telescope show relative offsets between the peak N{sub 2}D{sup +} (J = 2 {yields} 1) and N{sub 2}H{sup +} (J = 1 {yields} 0) emission. We highlight the case of L1157 using interferometric observations from the Submillimeter Array and Plateau de Bure Interferometer of the N{sub 2}D{sup +} (J = 3 {yields} 2) and N{sub 2}H{sup +} (J = 1 {yields} 0) transitions, respectively. Depletion of N{sub 2}D{sup +} in L1157 is clearly observed inside a radius of {approx}2000 AU (7'') and the N{sub 2}H{sup +} emission is resolved into two peaks at radii of {approx}1000 AU (3.''5), inside the depletion region of N{sub 2}D{sup +}. Chemical models predict a depletion zone in N{sub 2}D{sup +} and N{sub 2}H{sup +} due to destruction of H{sub 2}D{sup +} at T {approx} 20 K and the evaporation of CO off dust grains at the same temperature. However, the abundance offsets of 1000 AU between the two species are not reproduced by chemical models, including a model that follows the infall of the protostellar envelope. The average abundance ratios of N{sub 2}D{sup +} to N{sub 2}H{sup +} have been shown to decrease as protostars evolve by Emprechtinger et al., but this is the first time depletion zones of N{sub 2}D{sup +} have been spatially resolved. We suggest that the difference in depletion zone radii for N{sub 2}H{sup +} and N{sub 2}D{sup +} is caused by either the CO evaporation temperature being above 20 K or an H{sub 2} ortho-to-para ratio gradient in the inner envelope.

79 ASTRONOMY AND ASTROPHYSICS↗

Incorporation of copper ions into crystals of T2 copper-depleted laccase from Botrytis aclada

The restoration of the native form of laccase from B. aclada from the type 2 copper-depleted form of the enzyme was investigated. Copper ions were found to be incorporated into the active site after soaking the depleted enzyme in a Cu{sup +}-containing solution. Laccases belong to the class of multicopper oxidases catalyzing the oxidation of phenols accompanied by the reduction of molecular oxygen to water without the formation of hydrogen peroxide. The activity of laccases depends on the number of Cu atoms per enzyme molecule. The structure of type 2 copper-depleted laccase from Botrytis aclada has been solved previously. With the aim of obtaining the structure of the native form of the enzyme, crystals of the depleted laccase were soaked in Cu{sup +}- and Cu{sup 2+}-containing solutions. Copper ions were found to be incorporated into the active site only when Cu{sup +} was used. A comparative analysis of the native and depleted forms of the enzymes was performed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Bond rupture between colloidal particles with a depletion interaction

The force required to break the bonds of a depletion gel is measured by dynamically loading pairs of colloidal particles suspended in a solution of a nonadsorbing polymer. Sterically stabilized poly(methyl methacrylate) colloids that are 2.7 μm diameter are brought into contact in a solvent mixture of cyclohexane-cyclohexyl bromide and polystyrene polymer depletant. The particle pairs are subject to a tensile load at a constant loading rate over many approach-retraction cycles. The stochastic nature of the thermal rupture events results in a distribution of bond rupture forces with an average magnitude and variance that increases with increasing depletant concentration. The measured force distribution is described by the flux of particle pairs sampling the energy barrier of the bond interaction potential based on the Asakura–Oosawa depletion model. A transition state model demonstrates the significance of lubrication hydrodynamic interactions and the effect of the applied loading rate on the rupture force of bonds in a depletion gel.

42 ENGINEERING↗

Targeted rRNA depletion enables efficient mRNA sequencing in diverse bacterial species and complex co-cultures

Bacterial mRNA sequencing is inefficient due to the abundance of ribosomal RNA that is challenging to deplete. While commercial kits target rRNA from common bacterial species, they are frequently inefficient when applied to divergent species, including those from environmental isolates. Similarly, other methods typically employ large probe sets that tile the entire length of rRNAs; however, such approaches are infeasible when applied to many species. Therefore, we present EMBR-seq+, which requires fewer than 10 oligonucleotides per rRNA by combining rRNA blocking primers with RNase H-mediated depletion to achieve rRNA removal efficiencies of up to 99% in diverse bacterial species. Furthermore, in more complex microbial co-cultures between Fibrobacter succinogenes strain UWB7 and anaerobic fungi, EMBR-seq+ depleted both bacterial and fungal rRNA, with a fourfold improvement in bacterial rRNA depletion compared with a commercial kit, thereby demonstrating that the method can be applied to non-model microbial mixtures. Notably, for microbes with unknown rRNA sequences, EMBR-seq+ enables rapid iterations in probe design without requiring to start experiments from total RNA. Finally, efficient depletion of rRNA enabled systematic quantification of the reprogramming of the bacterial transcriptome when cultured in the presence of the anaerobic fungi Anaeromyces robustus or Caecomyces churrovis. We observed that F. succinogenes strain UWB7 downregulated several lignocellulose-degrading carbohydrate-active enzymes in the presence of anaerobic gut fungi, suggesting close interactions between two cellulolytic species that specialize in different aspects of biomass breakdown. Thus, EMBR-seq+ enables efficient, cost-effective, and rapid quantification of the transcriptome to gain insights into non-model microbial systems.

59 BASIC BIOLOGICAL SCIENCES↗

Specification for the VERA Depletion Benchmark Suite

CASL-X-2015-1014-000 iii Consortium for Advanced Simulation of LWRs EXECUTIVE SUMMARY The CASL neutronics simulator MPACT is under development for the neutronics and T-H coupled simulation for the pressurized water reactor. MPACT includes the ORIGEN-API and internal depletion module to perform depletion calculations based upon neutron-material reaction and radioactive decay. It is a challenge to validate the depletion capability because of the insufficient measured data. One of the detoured methods to validate it is to perform a code-to-code comparison for benchmark problems. In this study a depletion benchmark suite has been developed and a detailed guideline has been provided to obtain meaningful computational outcomes which can be used in the validation of the MPACT depletion capability.

97 MATHEMATICS AND COMPUTING↗

Assessing Several Modeling Approaches in Depletion Studies of a TRISO-Fueled Microreactor

The impact of MCNP6 depletion resolution on core lifetime is examined in the context of the Snowflake microreactor with explicit TRISO fuel. The change in core lifetime and isotope mass as a result of different tracked isotopes, timesteps, and spatial regions is discussed. Calculation speed of a prototype MCNP delta tracking module is compared to a reactivity equivalent physical transformation (RPT). Using a single depletion material underpredicts core lifetime by 15%, and the resolution necessary to converge isotope mass greatly depends on the specific isotope, in addition to the size (and location) of the depletion region. The prototype delta tracking module decreases the CPU time of explicit TRISO criticality calculations by 30%, but does not always result in a speedup when used with depletion. Significant depletion speedup is obtained using RPT (50% faster), and all isotope masses agreed within three percent.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Measured and calculated fast neutron spectra in a depleted uranium and lithium hydride shielded reactor

Measurements of MeV neutron were made at the surface of a lithium hydride and depleted uranium shielded reactor. Four shield configurations were considered: these were assembled progressively with cylindrical shells of 5-centimeter-thick depleted uranium, 13-centimeter-thick lithium hydride, 5-centimeter-thick depleted uranium, 13-centimeter-thick lithium hydride, 5-centimeter-thick depleted uranium, and 3-centimeter-thick depleted uranium. Measurements were made with a NE-218 scintillation spectrometer; proton pulse height distributions were differentiated to obtain neutron spectra. Calculations were made using the two-dimensional discrete ordinates code DOT and ENDF/B (version 3) cross sections. Good agreement between measured and calculated spectral shape was observed. Absolute measured and calculated fluxes were within 50 percent of one another; observed discrepancies in absolute flux may be due to cross section errors.

Lahti, G. P.↗

Seasonal dependence of the distribution of large-scale plasma depletions in the low-latitude F region

From several years of Atmosphere Explorer data, it is shown that large-scale plasma density depletions (horizontal scale greater than 1000km) in the nocturnal F region occur mainly during the first half of the night. The geomagnetic latitude of these depletions depends on season: at solstice periods the occurrence is mainly in the summer hemisphere and at equinoxes mainly on the geomagnetic equator. Large-scale depletions occur most often at longitudes characterized by a large magnetic declination. The large-scale plasma depletions are interpreted to be a consequence of imposed upward drift which raises the F region above the satellite trajectory. This interpretation is tested by calculating the vertical ion drift velocity imposed by zonal and meridional winds and electrostatic fields, with allowance for the effects of diffusion. The calculations reveal a correspondence between the locations of maxima in the calculated vertical ion drift velocity and the large-scale plasma depletions.

Dachev, T. P.↗

Ozone depletion during solar proton events in solar cycle 21

Ozone profile data from the Solar Backscattered Ultraviolet Instrument on Nimbus 7 from 1979 to the present and clear cases of ozone destruction associated with five sudden proton events (SPEs) on June 7, 1979, August 21, 1979, October 13-14, 1981, July 13, 1982, and December 8, 1982 are found. During the SPE on July 13, 1982, the largest of this solar cycle, no depletion at all at 45 km is observed, but there is a 15 percent ozone depletion at 50 km increasing to 27 percent at 55 km, all at a solar zenith angle of 85 deg. A strong variation of the observed depletion with solar zenith angle is found, with maximum depletion occurring at the largest zenith angles (near 85 deg) decreasing to near zero for angles below about 70 deg. The observed depletion is short lived, disappearing within hours of the end of the SPE.

Mcpeters, R. D.↗

The timing and mechanism of depletion in Lewisian granulites

Large Ion Lithophile (LIL) depletion in Lewisian granulites is discussed. Severe depletions in U, Th, and other LIL have been well documented in Lewisan mafic and felsic gneisses, but new Pb isotopic analyses show little or no depletion in lithologies with high solidus temperatures, such as peridotite. This suggests that LIL transport in this terrane took place by removal of partial melts rather than by pervasive flooding with externally derived CO2. The Pb and Nd isotopic data gathered on these rocks show that the depletion and granulite metamorphism are distinct events about 250 Ma apart. Both fluid inclusions and cation exchange geothermometers date from the later metamorphic event and therefore have little bearing on the depletion event, suggesting a note of caution for interpretations of other granulite terranes.

Cohen, A. S.↗

Mesospheric ionization and O2 1Delta(g) depletion

Observations of O2 1Delta(g) emission during solar proton events reveal large depletions below 80 and near 90 km. The lower-altitude depletions are believed to be due to odd hydrogen production and associated depletion of ozone, but the mechanism producing the depletion near 90 km has not yet been established. In this paper, it is proposed that an exothermic charge exchange reaction between O2(+) and O2 1Delta(g) is likely to be responsible for these high-altitude depletions. In particular, it is shown that the vertical structure of the observed change in airglow emission is consistent with this mechanism.

Spear, K. A.↗

He(2+) and H(+) dynamics in the subsolar magnetosheath and plasma depletion layer

A magnetosheath interval monitored by a pair of close upstream spacecraft is analyzed. Composition measurements are used to determine separately many of the properties of H(+) and He(2+) in the magnetosheath, plasma depletion layer, and accelerated flow layer. Magnetosheath ion densities and density ratios are well correlated with those in the upstream and on average the He(2+)/H(+) temperature ratio remains constant across the shock. Temperatures decrease and anisotropies increase as the magnetosheath plasma is lost parallel to the magnetic field in the depletion layer. Compared to the magnetosheath, there is a 20-30-percent enhancement in the depletion layer He(2+)/H(+) density ratio and an enhancement in the depletion layer temperature ratio. By monitoring upstream conditions, a methodology is developed for studying the plasma depletion layer and magnetosheath separately.

Fuselier, S. A.↗

Venus: Vertical accretion of crust and depleted mantle and implications for geological history and processes

Models for the vertical accretion of a basaltic crust and depleted mantle layer on Venus over geologic time predict the eventual development of a net negatively buoyant depleted mantle layer, its foundering and its remixing with the underlying mantle. The consequences of the development of this layer, its loss, and the aftermath are investigated and compared to the geologic record of Venus revealed by Magellan. The young average age of the surface of Venus (several hundred million years), the formation of the heavily deformed tessera regions, the subsequent emplacement of widespread volcanic plains, the presently low rate of volcanic activity, and impact crater population that cannot be distinguished from a completely spatially random distribution, and the small number of impact craters embayed by volcanism, are all consistent with the development of a depleted mantle layer, its relatively rapid loss followed by large-scale volcanic flooding, and its subsequent reestablishment. We outline a 'catastrophic' tectonic resurfacing model in which the foundering of the depleted mantle layer several hundred million years ago caused globally extensive tectonic deformation and obliteration of the cratering record, accompanied by upwelling of warm fertile mantle and its pressure-release melting to produce extensive surface volcanism in the following period. Venus presently appears to be characterized by a relatively thick depleted mantle layer and lithosphere reestablished over the last several hundred million years following the previous instability event inferred to have produced the tessera terrain.

Head, James W.↗

Early time evolution of negative ion clouds and electron density depletions produced during electron attachment chemical release experiments

Two-dimensional electrostatic particle-in-cell simulations are used to study the early time evolution of electron depletions and negative ion clouds produced during electron attachment chemical releases in the ionosphere. The simulation model considers the evolution in the plane perpendicular to the magnetic field and a three-species plasma that contains electrons, positive ions, and also heavy negative ions that result as a by-product of the electron attachment reaction. The early time evolution (less than the negative ion cyclotron period) of the system shows that a negative charge surplus initially develops outside of the depletion boundary as the heavy negative ions move across the boundary. The electrons are initially restricted from moving into the depletion due to the magnetic field. An inhomogenous electric field develops across the boundary layer due to this charge separation. A highly sheared electron flow velocity develops in the depletion boundary due to E x B and Delta-N x B drifts that result from electron density gradients and this inhomogenous electric field. Structure eventually develops in the depletion boundary layer due to low-frequency electrostatic waves that have growth times shorter than the negative ion cyclotron period. It is proposed that these waves are most likely produced by the electron-ion hybrid instability that results from sufficiently large shears in the electron flow velocity.

Scales, W. A.↗

Tracking the Depleted Mantle Signature in Melt Inclusions and Residual Glass of Basaltic Martian Shergottites using Secondary Ionization Mass Spectrometry

Trace element abundances of depleted shergottite magmas recorded by olivine-hosted melt inclusions (MI) and interstitial mesostasis glass were measured using the Cameca ims-1270 ion microprobe. Two meteorites: Tissint, an olivine-­phyric basaltic shergottite which fell over Morocco July 18th 2001; and the Antarctic meteorite Yamato 980459 (Y98), an olivine-phyric basaltic shergottite with abundant glassy mesostasis have been studied. Chondrite-­normalized REE patterns for MI in Tissint and Y98 are characteristically LREE depleted and, within analytical uncertainty, parallel those of their respective whole rock composition; supporting each meteorite to represent a melt composition that has experienced closed-­system crystallization. REE profiles for mesostasis glass in Y98 lie about an order of magnitude higher than those from the MI; with REE profiles for Tissint MI falling in between. Y98 MI have the highest average Sm/Nd and Y/Ce ratios, reflecting their LREE depletion and further supporting Y98 as one of our best samples to probe the depleted shergotitte mantle. In general, Zr/Nb ratios overlap between Y98 and Tissint MI, Ce/Nb ratios overlap between Y98 MI and mesostasis glass, and Sm/Nd ratios overlap between Y98 mesostasis glass and Tissint MI. These features support similar sources for both, but with subtle geochemical differences that may reflect different melting conditions or fractionation paths during ascent from the mantle. Interestingly, the REE patterns for both Y98 bulk and MI analyses display a flattening of the LREE that suggests a crustal contribution to the Y98 parent melt. This observation has important implications for the origins of depleted and enriched shergottites.

Peters, Timothy J.↗

The New MCNP6 Depletion Capability

The first MCNP based inline Monte Carlo depletion capability was officially released from the Radiation Safety Information and Computational Center as MCNPX 2.6.0. Both the MCNP5 and MCNPX codes have historically provided a successful combinatorial geometry based, continuous energy, Monte Carlo radiation transport solution for advanced reactor modeling and simulation. However, due to separate development pathways, useful simulation capabilities were dispersed between both codes and not unified in a single technology. MCNP6, the next evolution in the MCNP suite of codes, now combines the capability of both simulation tools, as well as providing new advanced technology, in a single radiation transport code. We describe here the new capabilities of the MCNP6 depletion code dating from the official RSICC release MCNPX 2.6.0, reported previously, to the now current state of MCNP6. NEA/OECD benchmark results are also reported. The MCNP6 depletion capability enhancements beyond MCNPX 2.6.0 reported here include: (1) new performance enhancing parallel architecture that implements both shared and distributed memory constructs; (2) enhanced memory management that maximizes calculation fidelity; and (3) improved burnup physics for better nuclide prediction. MCNP6 depletion enables complete, relatively easy-to-use depletion calculations in a single Monte Carlo code. The enhancements described here help provide a powerful capability as well as dictate a path forward for future development to improve the usefulness of the technology.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

ALEPH2 - A general purpose Monte Carlo depletion code

The Monte-Carlo burn-up code ALEPH is being developed at SCK-CEN since 2004. A previous version of the code implemented the coupling between the Monte Carlo transport (any version of MCNP or MCNPX) and the ' deterministic' depletion code ORIGEN-2.2 but had important deficiencies in nuclear data treatment and limitations inherent to ORIGEN-2.2. A new version of the code, ALEPH2, has several unique features making it outstanding among other depletion codes. The most important feature is full data consistency between steady-state Monte Carlo and time-dependent depletion calculations. The last generation general-purpose nuclear data libraries (JEFF-3.1.1, ENDF/B-VII and JENDL-4) are fully implemented, including special purpose activation, spontaneous fission, fission product yield and radioactive decay data. The built-in depletion algorithm allows to eliminate the uncertainties associated with obtaining the time-dependent nuclide concentrations. A predictor-corrector mechanism, calculation of nuclear heating, calculation of decay heat, decay neutron sources are available as well. The validation of the code on the results of REBUS experimental program has been performed. The ALEPH2 has shown better agreement with measured data than other depletion codes. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Monte Carlo depletion calculations using VESTA 2.1 new features and perspectives

VESTA is a Monte Carlo depletion interface code that is currently under development at IRSN. With VESTA, the emphasis lies on both accuracy and performance, so that the code will be capable of providing accurate and complete answers in an acceptable amount of time compared to other Monte Carlo depletion codes. From its inception, VESTA is intended to be a generic interface code so that it will ultimately be capable of using any Monte-Carlo code or depletion module and that can be tailored to the users needs. A new version of the code (version 2.1.x) will be released in 2012. The most important additions to the code are a burn up dependent isomeric branching ratio treatment to improve the prediction of metastable nuclides such as {sup 242m}Am and the integration of the PHOENIX point depletion module (also developed at IRSN) to overcome some of the limitations of the ORIGEN 2.2 module. The task of extracting and visualising the basic results and also the calculation of physical quantities or other data that can be derived from the basic output provided by VESTA will be the task of the AURORA depletion analysis tool which will be released at the same time as VESTA 2.1.x. The experimental validation database was also extended for this new version and it now contains a total of 35 samples with chemical assay data and 34 assembly decay heat measurements. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗