Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Chl”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
NASA NTRS2020

Community Composition and Photosynthetic Physiology of Phytoplankton in the Western Subarctic Pacific Near the Kuril Islands With Special Reference to Iron Availability

The western subarctic Pacific (WSP) is known as one of the most productive regions among the world's oceans in spring. However, its oceanic waters are also known as a high‐nutrient, low‐chlorophyll region during summer due to low iron (Fe) availability in seawater. Indeed, recent studies have demonstrated that the distribution of Fe in the WSP is complex and heterogeneous. This study thus investigated the effects of Fe availability on the community composition and photophysiology of surface phytoplankton from coastal to offshore waters in the WSP in the summer of 2014. Although relatively high concentrations (>2 mg/m3) of chlorophyll (chl) a were found in the Sea of Okhotsk and some coastal waters, low chl a concentrations (<1 mg/m3) were commonly observed in offshore waters. Based on dissolved Fe and macronutrient concentrations, we deduced that low Fe availability limited phytoplankton growth in offshore waters, whereas low silicate and/or nitrate levels limited growth in the shelf areas. Scanning electron microscopy also revealed that the centric diatom Chaetoceros exclusively dominated the diatom assemblages in the shelf and coexisted with pennate diatoms in offshore waters, respectively. Primary productivity in surface waters was negatively correlated with the bottom of the euphotic layer or the light saturation index of the photosynthesis‐irradiance curve, which indicates that the phytoplankton assemblages were well acclimated to in situ light conditions regardless of the water masses.

Yoshida, Kazuhiro↗
NASA NTRSDate not supplied

Development of the 10% NASA CRM High-Lift Common Research Model (CRM-HL)

A 10%-scale Common Research Model-high lift version (CRM-HL) was developed to support extensive experimental investigations in the areas of active flow control, control surface optimization for landing and take-off, acoustic technology development, and computational fluid dynamics code validation to name a few. The CRM-HL was designed to have modular components that will enable the model to be tested in the following three forms: (1) conventional high-lift (CHL) configuration, (2) Active Flow Control (AFC) enabled simple hinged flap high-lift (SHL) configuration, and (3) CHL configuration with noise reduction treatments for the slats and/or the flaps. This paper describes the design, analysis, and fabrication of the CRM-HL for testing in the NASA Langley Research Center (LaRC) 14 by 22-Foot Subsonic Tunnel (14x22) and other wind tunnels as deemed appropriate by the research community such as the Qinetiq 5 Meter tunnel.

Jared S. Fell↗
NASA NTRS2021

Assessing the Skills of a Seasonal Forecast of Chlorophyll in the Global Pelagic Oceans

While forecasts of atmospheric variables, and to a lesser degree ocean circulation, are relatively common, the forecast of biogeochemical conditions is still in its infancy. Using a dynamical ocean biogeochemical forecast forced by seasonal forecasts of atmospheric and physical ocean variables, we produce seasonal predictions of chlorophyll concentration at the global scale. Results show significant Anomaly Correlation Coefficients (ACCs) for the majority of regions (11 out of the 12 regions for the 1-month lead forecast). Root mean square errors are smaller (<0.05μg chlorophyll (chl) L−1) in the Equatorial regions compared to the higher latitudes(range from 0.05 up to 0.13 μg chl L−1). The forecast for all regions except three (North Atlantic, South Pacific and North Indian) are within the Semi-Interquartile Range of the satellite chlorophyll concentration (Suomi-National Polar-orbiting Partnership (NPP), 27.9%). This suggests the potential for skillful global biogeochemical forecasts on seasonal timescales of chlorophyll, primary production and harmful algal blooms that could support fisheries management and other applications.

ocean biogeochemistry↗
NASA NTRS2022

Evaluation of Retrieving Chlorophyll a Concentration and Colored Dissolved Organic Matter Absorption from Satellite Ocean Color Remote Sensing in the Coastal Waters of Hokkaido, Japan

Coastal ecosystems are important in biogeochemical cycles, because they provide many pathways for chemical elements and compounds to flow between the physical environment and living organisms. The spatial and temporal scales of the biotic and abiotic interactions establish the inherent dynamics of the coastal zone and the requirement for high-resolution investigations. Using match-up data collected in Hokkaido coastal waters, the study herein evaluated the performance of deriving chlorophyll (Chl) a concentration and colored dissolved organic matter (CDOM) absorption (a(sub CDOM)) as a function of wavelength (λ) from satellite observations. The Japanese Aerospace Exploration Agency (JAXA) Second generation GLobal Imager (SGLI), which has 250 m spatial resolution, was compared with other satellite ocean color (OC) sensors. Our results show that the standard SGLI OC4 algorithm with the 530 nm band provided the best performance for Chl a retrievals, and the end-member analysis (EMA) technique improved the estimation of a(sub CDOM)(λ) . Overall differences between in situ radiometric data and satellite retrievals suggest that additional challenges remain, especially in the ultraviolet and blue spectral domains which are useful for studying CDOM and harmful algae blooms in coastal waters. To fulfill applications wherein high-quality remote sensing data are required, the improvement of the atmospheric correction is a likely research area where additional accomplishment will be beneficial for satellite observations of optically complex coastal waters.

SGLI/GCOM-C↗
NASA NTRS2022

Estimating pixel-level uncertainty in ocean color retrievals from MODIS

The spectral distribution of marine remote sensing reflectance, R(rs), is the fundamental measurement of ocean color science, from which a host of bio-optical and biogeochemical properties of the water column can be derived. Estimation of uncertainty in these derived properties is thus dependent on knowledge of the uncertainty in satellite-retrieved R(rs) (u(c)(R(rs))) at each pixel. Uncertainty in R(rs), in turn, is dependent on the propagation of various uncertainty sources through the R(rs) retrieval process, namely the atmospheric correction (AC). A derivative-based method for uncertainty propagation is established here to calculate the pixel-level uncertainty in R(rs), as retrieved using NASA’s multiple-scattering epsilon (MSEPS) AC algorithm and verified using Monte Carlo (MC) analysis. The approach is then applied to measurements from the Moderate Resolution Imaging Spectroradiometer (MODIS) on the Aqua satellite, with uncertainty sources including instrument random noise, instrument systematic uncertainty, and forward model uncertainty. The uc(Rrs) is verified by comparison with statistical analysis of coincident retrievals from MODIS and in situ Rrs measurements, and our approach performs well in most cases. Based on analysis of an example 8-day global products, we also show that relative uncertainty in R(rs) at blue bands has a similar spatial pattern to the derived concentration of the phytoplankton pigment chlorophyll-a (chl-a), and around 7.3%, 17.0%, and 35.2% of all clear water pixels (chl-a ≤ 0.1 mg/cu.m) with valid u(c)(R(rs)) have a relative uncertainty ≤ 5% at bands 412 nm, 443 nm, and 488 nm respectively, which is a common goal of ocean color retrievals for clear waters. While the analysis shows that u(c)(R(rs)) calculated from our derivative-based method is reasonable, some issues need further investigation, including improved knowledge of forward model uncertainty and systematic uncertainty in instrument calibration.

Pixel-level uncertainty↗
NASA NTRS2022

Identifying Meteorologic and Oceanic Conditions Contributing to a Unique Phytoplankton Bloom Occurrence in Micronesia during October 2013

On the first several days of October 2013, daily chlorophyll a (chl a) data acquired by the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard the National Aeronautics and Space Administration (NASA) Aqua satellite detected a marked increase in chlorophyll a concentrations (chl a) in the vicinity of Chuuk Lagoon and the Federated States of Micronesia. Such an increase, likely indicative of a phytoplankton bloom, has not been observed in this location at any other time during the MODIS-Aqua mission, which commenced in 2002 and continues to present. Examination of sea surface wind data from the Modern Era Retrospective analysis for Research and Applications Version 2 (MERRA-2) reanalysis dataset indicated that the region experienced a sequence of alternating elevated and very low wind speed events prior to the observation of the bloom. The influence of the winds can be seen in MERRA-2 sea surface skin temperature data. Elevated windspeeds for several days likely induced a mixing of deeper waters with higher nutrient levels to the surface, which was followed by stratification and phytoplankton growth during low wind intervals and finally transport induced by a brief high windspeed event. Analysis of hourly MERRA-2 maximum windspeed data over a 40-year period indicated that this sequence was climatologically rare.

Remote Sensing↗
NASA NTRS2024

Evaluation of Vertical Patterns in Chlorophyll-A Derived From A Data Assimilating Model of Satellite-Based Ocean Color

Satellite-based sensors of ocean color have become the primary tool to infer changes in surface chlorophyll, while BGC-Argo floats are now filling the information gap at depth. Here we use BGC-Argo data to assess depth-resolved information on chlorophyll-a derived from an ocean biogeochemical model constrained by the assimilation of surface ocean color remote sensing. The data-assimilating model replicates well the general seasonality and meridional gradients in surface and depth-resolved chlorophyll-a inferred from the float array in the Southern Ocean. On average, the model tends to overestimate float-based chlorophyll, particularly at times and locations of high productivity such as the beginning of the spring bloom, subtropical deep chlorophyll maxima, and non-iron limited regions of the Southern Ocean. The highest model RMSE in the upper 50 m with respect to the float array is of 0.6 mg Chl m −3 , which should allow the detection of seasonal changes in float-based biomass (varying between 0.01 and >1 mg Chl m −3 ) but might hinder the identification of subtle changes in chlorophyll at narrow local scales. Both model and float profiling data show good agreement with in situ data from station ALOHA, with model estimates showing a slight accuracy edge in inferring depth-resolved observations. Uncertainties in float bio-optical estimates impede their use as a reliable benchmark for validation, but the general qualitative agreement between model and float data provides confidence in the ability of model to replicate biogeochemical features below the surface, where data is not directly constrained by the assimilation of satellite ocean color.

Lionel A Quintero↗
DOE OSTI2023

TRACER-MAP AMS Measurement

Aerosol composition was measured by using the high resolution time-of-flight aerosol mass spectrometer (HR ToF-AMS). The data were collected at five different sites (AMF1, Aldine, University of Houston (UH), Jones Forest (JF), San Jacinto Battleground (BG)) from July to August, 2022. Dataset includes time series of five species of aerosol composition: Organic, sulfate (SO4), nitrate (NO3), ammonium (NH4), chlorine (Chl)

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2023

Simulated Inherent Optical Properties of Aquatic Particles Using the Equivalent Algal Populations (EAP) Model

Paired measurements of phytoplankton absorption and backscatter, the inherent optical properties central to the interpretation of ocean colour remote sensing data, are notoriously rare. We present a dataset of Chlorophyll a (Chl a) -specific phytoplankton absorption, scatter and backscatter for 17 different phytoplankton groups, derived from first principles using measured in vivo pigment absorption and a well-validated semi-analytical coated sphere model which simulates the full suite of biophysically consistent phytoplankton optical properties. The optical properties of each simulated phytoplankton cell are integrated over an entire size distribution and are provided at high spectral resolution. The model code is additionally included to enable user access to the complete set of wavelength-dependent, angularly resolved volume scattering functions. This optically coherent dataset of hyperspectral optical properties for a set of globally significant phytoplankton groups has potential for use in algorithm development towards the optimal exploitation of the new age of hyperspectral satellite radiometry.

Equivalent Algal Populations↗
DOE OSTI2023

Mass spectrometry and spectroscopic characterization of a tetrameric photosystem I supercomplex from Leptolyngbya ohadii , a desiccation-tolerant cyanobacterium

Cyanobacteria inhabiting desert biological soil crusts face the harsh conditions of the desert. They evolved a suite of strategies toward desiccation-hydration cycles mixed with high light irradiations, etc. In this study we purified and characterized the structure and function of Photosystem I (PSI) from Leptolyngbya ohadii, a desiccation-tolerant desert cyanobacterium. We discovered that PSI forms tetrameric (PSI-Tet) aggregate. We investigated it by using sucrose density gradient centrifugation, clear native PAGE, high performance liquid chromatography, mass spectrometry (MS), time-resolved fluorescence (TRF) and time-resolved transient absorption (TA) spectroscopy. MS analysis identified the presence of two PsaB and two PsaL proteins in PSI-Tet and uniquely revealed that PsaLs are N-terminally acetylated in contrast to non-modified PsaL in the trimeric PSI from Synechocystis sp. PCC 6803. Chlorophyll (Chl) a fluorescence decay profiles of the PSI-Tet performed at 77 K revealed two emission bands at ∼690 nm and 725 nm with the former appearing only at early delay time. The main fluorescence emission peak, associated with emission from the low energy Chls a, decays within a few nanoseconds. TA studies demonstrated that the 725 nm emission band is associated with low energy Chls a with absorption band clearly resolved at ∼710 nm at 77 K. As a result, our work suggests that the heterogenous composition of PsaBs and PsaL in PSI-Tet is related with the adaptation mechanisms needed to cope with stressful conditions under which this bacterium naturally grows.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Feeling the Strain: Quantifying Ligand Deformation in Photosynthesis

Structural distortion of protein-bound ligands can play a critical role in enzyme function by tuning the electronic and chemical properties of the ligand molecule. However, quantifying these effects is difficult due to the limited resolution of protein structures and the difficulty of generating accurate structural restrains for non-protein ligands. Here, we seek to quantify these effects through a statistical analysis of ligand distortion in Chlorophyll (Chl) proteins (CP), where ring deformation is thought to play a role in energy and electron transfer. To assess the accuracy of ring-deformation estimates from available structural data, we take advantage of the C 2 symmetry of Photosystem II (PSII), comparing ring-deformation estimates for equivalent sites both within and between 113 distinct X-ray and Cryogenic electron microscopy (CryoEM) PSII structures. Significantly, we find that several deformation modes exhibit considerable variability in predictions, even for equivalent monomers, down to 2 Å resolution, to an extent that probably prevents their utilization in optical calculations. We further find that refinement restrains play a critical role in determining deformation values to resolution as low as 2 Å. However, for those modes that are well-resolved in the structural data, ring deformation in PSII is strongly conserved across all species tested, from cyanobacteria to algae. Furthermore, these results highlight both the opportunities and limitations inherent in the structure-based analysis of the bioenergetic and optical properties of CPs and other protein-ligand complexes.

14 SOLAR ENERGY↗
DOE OSTI2024

Controlling Vibronic Coupling in Chlorophyll Proteins: The Effects of Excitonic Delocalization and Vibrational Localization

Vibrational-electronic (vibronic) coupling plays a critical role in excitation energy transfer in molecular aggregates and pigment-protein complexes (PPCs). But the interplay between excitonic delocalization and vibronic interactions is complex, often leaving even qualitative questions as to what conceptual framework (e.g., Redfield versus Forster theory) should be used to interpret experimental results. To shed light on this issue, we report here on the interplay between excitonic delocalization and vibronic coupling in site-directed mutants of the water soluble chlorophyll protein (WSCP), as reflected in 77 K fluorescence spectra. Experimentally, we find that in PPCs where excitonic delocalization is disrupted (either by mutagenesis or heterodimer formation), the relative intensity of the vibrational sideband (VSB) in fluorescence spectra is suppressed by up to 37% compared to the native protein. Furthermore, numerical simulations reveal that this effect results from the localization of high-frequency vibrations in the coupled system; while excitonic delocalization suppresses the purely electronic transition due to H-aggregate-like dipole-dipole interference, high-frequency vibrations are unaffected, leading to a relative enhancement of the VSB. By comparing VSB intensities of PPCs both in the presence and absence of excitonic delocalization, we extract a set of “local” Huang-Rhys (HR) factors for Chl a in WSCP. More generally, our results suggest a significant role for geometric effects in controlling energy-transfer rates (which depend sensitively on absorption/fluorescence line shapes) in molecular aggregates and PPCs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Isolating the Vibrational Spectra of the Red Chlorophylls in Photosystem I with Multispectral Two-Dimensional Spectroscopy

Photosystem I (PSI) uses an antenna of chlorophyll (Chl) molecules to create a charge separated state with high quantum efficiency. Understanding the charge separation mechanism is currently hindered by spectral overlap between the antenna and reaction center (RC) Chls and the fact that energy transfer and electron transfer occur with similar time scales. Here, we characterize the antenna excited states by applying two-dimensional electronic (2DES) and two-dimensional electronic-vibrational (2DEV) spectroscopy to PSI complexes with closed RCs. Comparison of the 2DES and 2DEV spectra, which evolve with the same kinetics, enabled characterization of the vibrational modes of the antenna during energy equilibration between spectrally distinct Chls. Through global analysis, we learn how energy transfer between the Bulk and Red Chls presents in the 2DEV spectra and we definitively identify vibrations of the cationic components of the mixed exciton and intermolecular charge transfer states associated with the Red Chls. This work enables future studies of the initial charge separation mechanism of PSI by 2DEV spectroscopy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Database of low‐temperature absorption and fluorescence spectra of native photosynthetic tetrapyrrole macrocycles

Low-temperature (77 K) absorption and fluorescence spectra of 12 naturally occurring photosynthetic tetrapyrrole macrocycles have been recorded in a frozen glass (2-methyltetrahydrofuran). The compounds encompass distinct chromophore classes: porphyrin, chlorophyll c 2 ; chlorin, chlorophylls a, b, d, f and bacteriochlorophylls c, d, e, f; and bacteriochlorin, bacteriochlorophylls a, b, g. The spectra are compared with those of the same pigment in liquid solution (predominantly 2-methyltetrahydrofuran) at room temperature (293 K). The measured Stokes shifts at 77 K across the 12 macrocycles range from ~30 to 300 cm −1 . The spectral data in digital form are made available as part of the PhotochemCAD databases. Literature searches have revealed extensive published data for Chl a (often in biological matrices) but at best rather limited data for less common macrocycles. The availability of a systematic collection of curated spectral data collected at low temperature should be useful for a variety of assessments, including reconstruction of absorption spectra of (bacterio)chlorophyll-containing protein complexes, vibrational analysis of absorption and fluorescence spectra, and calculations where knowledge of energy levels is important.

Niedzwiedzki, Dariusz M. [Washington University in↗
DOE OSTI2023

Charge separation in the photosystem II reaction center resolved by multispectral two-dimensional electronic spectroscopy

The photosystem II reaction center (PSII RC) performs the primary energy conversion steps of oxygenic photosynthesis. While the PSII RC has been studied extensively, the similar time scales of energy transfer and charge separation and the severely overlapping pigment transitions in the Qy region have led to multiple models of its charge separation mechanism and excitonic structure. Here, we combine two-dimensional electronic spectroscopy (2DES) with a continuum probe and two-dimensional electronic vibrational spectroscopy (2DEV) to study the cyt b559-D1D2 PSII RC at 77 K. This multispectral combination correlates the overlapping Qy excitons with distinct anion and pigment-specific Q x and mid-infrared transitions to resolve the charge separation mechanism and excitonic structure. Through extensive simultaneous analysis of the multispectral 2D data, we find that charge separation proceeds on multiple time scales from a delocalized excited state via a single pathway in which Pheo D1 is the primary electron acceptor, while Chl D1 and P D1 act in concert as the primary electron donor.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2024

RuBisCO activity assays: a simplified biochemical redox approach for in vitro quantification and an RNA sensor approach for in vivo monitoring

Abstract Background Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is the most abundant soluble protein in nature. Extensive studies have been conducted for improving its activity in photosynthesis through approaches like protein engineering. Concurrently, multiple biochemical and radiolabeling assays have been developed for determining its activity. Although these existing assays yield reliable results, they require addition of multiple external components, rendering them less convenient and expensive. Therefore, in this study, we have developed two relatively cheaper, convenient, and easily reproducible assays for quantitative and qualitative estimation of RuBisCO activity. Results We simplified a contemporary NADH based spectrophotometric RuBisCO assay by using cyanobacterial cell lysate as the source for Calvin cycle enzymes. We analyzed the influence of inorganic carbon substrates, CO 2 and NaHCO 3 , and varying protein concentrations on RuBisCO activity. Ribulose-1,5-bisphosphate (RuBP) consumption rates for the cultures grown under 5% CO 2 were 5–7 times higher than the ones grown with 20 mM NaHCO 3 , at different protein concentrations. The difference could be due to the impaired activity of carbonic anhydrase in the cell lysate, which is required for the conversion of HCO 3 − to CO 2 . The highest RuBisCO activity of 2.13 nmol of NAD + / µg of Chl-a/ min was observed with 50 µg of protein and 5% CO 2 . Additionally, we developed a novel RNA-sensor based fluorescence assay that is based on the principle of tracking the kinetics of ATP hydrolysis to ADP during the conversion of 3-phosphoglycerate (3-PG) to 1,3-bisphosphoglycerate (1,3-BPG) in the Calvin cycle. Under in vitro conditions, the fluorometric assay exhibited ~ 3.4-fold slower reaction rate (0.37 min −1 ) than the biochemical assay when using 5% CO 2 . We also confirmed the in vivo application of this assay, where increase in the fluorescence was observed with the recombinant strain of Synechocystis sp. PCC 6803 (SSL142) expressing the ADP-specific RNA sensor, compared to the WT. In addition, SSL142 exhibited three-fold higher fluorescence when supplemented with 20 mM NaHCO 3 as compared to the cells that were grown without NaHCO 3 supplementation. Conclusions Overall, we have developed a simplified biochemical assay for monitoring RuBisCO activity and demonstrated that it can provide reliable results as compared to the prior literature. Furthermore, the biochemical assay using 5% CO 2 (100% relative activity) provided faster RuBP consumption rate compared to the biochemical assay utilizing 20 mM NaHCO 3 (30.70% relative activity) and the in vitro fluorometric assay using 5% CO 2 (29.64% relative activity). Therefore, the absorbance-based biochemical assay using 5% CO 2 or higher would be suitable for in vitro quantification of the RuBisCO activity. On the other hand, the RNA-sensor based in vivo fluorometric assay can be applied for qualitative analysis and be used for high-throughput screening of RuBisCO variants. As RuBisCO is an enzyme shared amongst all the photoautotrophs, the assays developed in this study can easily be extended for analyzing the RuBisCO activities even in microalgae and higher plants.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Tracking Photochemical and Photophysical Processes for Solar Energy Conversion Via Multidimensional Visible and Vibrational Spectroscopic Methods

This project was motivated by an overarching goal to elucidate the mechanism of energy and electron transfer that governs the efficient charge separation in photosystem I (PSI) complexes. PSI is a natural light harvesting complex that drives oxygenic photosynthesis in plants, algae, and cyanobacteria. It uses ~300 tightly packed chlorophylls (Chls) to absorb photons, transfer the excitation energy to the reaction center (RC), and generate a charge separated state with near unity quantum efficiency (QE). A better understanding of the mechanism of energy transfer and charge separation in PSI is required for understanding the high QE of natural light harvesting complexes, and it could lead to the further development of artificial photosynthetic systems for solar energy conversion. We applied two-dimensional electronic spectroscopy (2DES) to different cyanobacterial photosystem I complexes to map energy transfer pathways to gain insight into the efficient light harvesting of PSI. We interpreted the 2DES spectra through a global analysis procedure, finding two ultrafast equilibration processes involving red-shifted Chl states. The analysis procedure is general and can be readily applied to other natural and artificial light harvesting systems. In addition to investigating PSI complexes, we also performed measurements on model systems to establish general data analysis procedures for interpreting 2D spectra.

14 SOLAR ENERGY↗
DOE OSTI2024

High-Resolution Frequency-Domain Spectroscopic and Modeling Studies of Photosystem I (PSI), PSI Mutants and PSI Supercomplexes

Photosystem I (PSI) is one of the two main pigment–protein complexes where the primary steps of oxygenic photosynthesis take place. This review describes low-temperature frequency-domain experiments (absorption, emission, circular dichroism, resonant and non-resonant hole-burned spectra) and modeling efforts reported for PSI in recent years. In particular, we focus on the spectral hole-burning studies, which are not as common in photosynthesis research as the time-domain spectroscopies. Experimental and modeling data obtained for trimeric cyanobacterial Photosystem I (PSI 3 ), PSI 3 mutants, and PSI 3 –IsiA 18 supercomplexes are analyzed to provide a more comprehensive understanding of their excitonic structure and excitation energy transfer (EET) processes. Detailed information on the excitonic structure of photosynthetic complexes is essential to determine the structure–function relationship. We will focus on the so-called “red antenna states” of cyanobacterial PSI, as these states play an important role in photochemical processes and EET pathways. The high-resolution data and modeling studies presented here provide additional information on the energetics of the lowest energy states and their chlorophyll (Chl) compositions, as well as the EET pathways and how they are altered by mutations. We present evidence that the low-energy traps observed in PSI are excitonically coupled states with significant charge-transfer (CT) character. The analysis presented for various optical spectra of PSI 3 and PSI 3 -IsiA 18 supercomplexes allowed us to make inferences about EET from the IsiA 18 ring to the PSI 3 core and demonstrate that the number of entry points varies between sample preparations studied by different groups. In our most recent samples, there most likely are three entry points for EET from the IsiA 18 ring per the PSI core monomer, with two of these entry points likely being located next to each other. Therefore, there are nine entry points from the IsiA 18 ring to the PSI 3 trimer. We anticipate that the data discussed below will stimulate further research in this area, providing even more insight into the structure-based models of these important cyanobacterial photosystems.

59 BASIC BIOLOGICAL SCIENCES↗