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At least 1,063 records · Page 59

Detection of random noise and anatomy of continuous seismic waveforms in dense array data near Anza California

We develop a methodology to separate continuous seismic waveforms into random noise (RN), not random noise (NRN) produced by earthquakes, wind, traffic and other sources of ground motions, and an undetermined mixture of signals. The analysis is applied to continuous records from a dense seismic array on the San Jacinto fault zone. To detect RN signals, we cut hourly waveforms into non-overlapping 1 s time windows and apply cross-correlations to separate RN candidates from outliers. The cross-correlation coefficients between different RN candidates fall into a tight range (i.e. 0.09–0.35), while cross-correlation coefficients of RN candidates with NRN signals (e.g. seismic or air-traffic events) are lower. The amplitude spectra of RN candidates have a well-defined level, while the amplitude spectra of other signals deviate from that level. Using these properties, we examine the amplitude spectra of moving time windows and cross-correlation coefficients with RN templates in each hour. The hourly RN is quasi-stationary and the results cluster tightly in the parameter space of cross-correlation coefficients and L2 norm deviations from the mean spectra of RN candidates. Time windows with parameters in this tight cluster are identified as RN, windows that deviate significantly from the RN cluster are identified as NRN and windows with values in between are identified as mixed signals. Several iterations on each hourly data are used to update and stabilize the selection of RN templates and mean noise spectra. For the days examined, the relative fractions of RN, NRN and mixed signals in local day (night) times are about 26 (42 percent), 40 (33 percent) and 34 percent (25 percent), respectively.

Geochemistry & Geophysics↗

A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival

ABSTRACT The Shox2 homeodomain transcriptional regulator is known for its critical functions during mouse embryogenesis, enabling accurate development of limbs, craniofacial structures, neural populations and the cardiac conduction system. At the genomic level, the Shox2 gene is flanked by an extensive gene desert, a continuous non-coding genomic region spanning over 500 kilobases that contains a multitude of evolutionarily conserved elements with predicted cis -regulatory activities. However, the transcriptional enhancer potential of the vast majority of these elements in combination with the biological necessity of the gene desert have not yet been explored. Using transgenic reporter assays in mouse embryos to validate an extensive set of stringent epigenomic enhancer predictions, we identify several novel gene desert enhancers with distinct tissue-specific activities in Shox2 expressing tissues. 4C-seq chromatin conformation capture further uncovers a repertoire of gene desert enhancers with overlapping activities in the proximal limb, in a compartment essential for Shox2 -mediated stylopod formation. Leveraging CRISPR/Cas9 to delete the gene desert region contained in the Shox2 topologically associated domain (TAD), we demonstrate that this complex cis -regulatory platform is essential for embryonic survival and required for control of region-specific Shox2 expression in multiple developing tissues. While transcription of Shox2 in the embryonic limb is only moderately affected by gene desert loss, Shox2 expression in craniofacial and cardiac domains is nearly abolished. In particular, Shox2 transcripts in the sinus venosus (SV) encompassing the sinoatrial node (SAN) were depleted in embryos lacking the gene desert, likely accounting for the embryonic lethality due to Shox2 -dependency of the SAN pacemaker. Finally, we discover a 1.5kb SV enhancer within the deleted gene desert region, which may act as a genomic module controlling the development of the cardiac conduction system. In summary, our results identify a gene desert indispensable for pleiotropic patterning and highlight the importance of these extensive regulatory landscapes for embryonic development and viability.

Abassah-Oppong, Samuel↗

Nature of the ferromagnetic-antiferromagnetic transition in Y 1- x La x TiO 3

In this work, we explore the magnetically ordered ground state of the isovalently substituted Mott insulator Y 1- x La x TiO 3 for x≤ 0.3 via single-crystal growth, magnetometry, neutron diffraction, x-ray magnetic circular dichroism, muon spin rotation, and small-angle neutron scattering (SANS). We find that the decrease in the magnetic transition temperature on approaching the ferromagnetic-antiferromagnetic phase boundary at the La concentration xc ≈ 0.3 is accompanied by a strong suppression of both bulk and local ordered magnetic moments, along with a volume wise separation into magnetically ordered and paramagnetic regions. The thermal phase transition does not show conventional second-order behavior since neither a clear signature of dynamic critical behavior nor a power-law divergence of the magnetic correlation length is found for the studied substitution range; this finding becomes increasingly obvious with increasing La substitution. We find no evidence for a spin-glass phase. Finally, from SANS and magnetometry measurements, we discern a crossover from easy-axis to easy-plane magnetocrystalline anisotropy with increasing La substitution. These results indicate complex changes in magnetic structure upon approaching the phase boundary.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Realization of the axial next-nearest-neighbor Ising model in U 3 Al 2 Ge 3

In this paper, we report small-angle neutron scattering (SANS) measurements and theoretical modeling of U 3 Al 2 Ge 3 . Analysis of the SANS data reveals a phase transition to sinusoidally modulated magnetic order at T N = 63 K to be second order and a first-order phase transition to ferromagnetic order at T c = 48 K. Within the sinusoidally modulated magnetic phase (T c < T < T N ), we uncover a dramatic change, by a factor of 3, in the ordering wave vector as a function of temperature. Finally, these observations all indicate that U 3 Al 2 Ge 3 is a close realization of the three-dimensional axial next-nearest-neighbor Ising model, a prototypical framework for describing commensurate to incommensurate phase transitions in frustrated magnets.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Mechanism of endosomal escape by p H -responsive nucleic-acid vectors

Successful intracellular delivery of nucleic acids (NAs) hinges on many factors, one of them being NAs’ efficacious escape from endosomes. As competent NA vectors, pH-responsive gemini surfactants (GSs) might achieve high efficacy by facilitating endosomal escape. However, how the GSs assist the escape remains debated as many proposed mechanisms still lack experimental support, which hinders replication and further improvement of the efficient delivery. Here, via UV, fluorescence spectroscopy, and small-angle neutron scattering (SANS), we examined a pH-responsive GS's and a pH-unresponsive GS's capabilities to compact DNA and withstand binding competition, and their interactions with model endosomal and lysosomal membranes, at varied pHs. Acidification-driven enhancement of DNA-compaction capability and of stability against binding competition were found specific to the pH-responsive GS. Alongside the pH-responsive GS's structural perturbation to the membranes as observed with SANS, the features suggest that pH-responsive GSs facilitate endosomal escape by releasing excess GS molecules from DNA-GS complexes upon acidification in endosome maturation, with the released GS molecules disrupting endosomal and lysosomal membranes and thereby assisting the escape. Here a general design principle for NA vectors is proposed on the basis of this experimental finding.

59 BASIC BIOLOGICAL SCIENCES↗

Realization of ordered magnetic skyrmions in thin films at ambient conditions

Magnetic skyrmions have captivated physicists due to their topological nature and novel physical properties. In addition, skyrmions hold significant promise for future information technologies. A key barrier to realizing skyrmion-based devices has been stabilizing these spin structures under ambient conditions. In this paper, we demonstrate that the tunable magnetic properties of amorphous Fe/Gd mulitlayers enable the formation of skyrmion lattices which are stable over a large temperature and magnetic field parameter space, including room temperature and zero magnetic field. These skyrmions, having a hybrid nature displaying both Bloch-type and Néel-type characteristics, are stabilized by dipolar interactions rather than Dzyaloshinskii-Moriya interactions, typically considered a requirement for the generation of skyrmions. Small angle neutron scattering (SANS) was used in combination with soft x-ray microscopy to provide a unique, multiscale probe of the local and long-range order of these structures. The hexagonal lattice seen in SANS results from the hybrid skyrmion picture obtained with micromagnetic simulations. Furthermore, these results identify a pathway to engineer controllable skyrmion phases in thin film geometries which are stable at ambient conditions.

36 MATERIALS SCIENCE↗

Nanoscale magnetic phase competition throughout the Ni 50– x Co x Mn 40 Sn 10 phase diagram: Insights from small-angle neutron scattering

The Ni 2 MnSn-derived Ni 50– x Co x Mn 25+ y Sn 25– y alloys are premier examples of a class of off-stoichiometric Heusler alloys recently discovered to exhibit attractive magnetic properties in tandem with extraordinarily reversible martensitic phase transformations. Multiferroicity, magnetic phase competition and separation, field-induced martensitic transformations, magnetic shape memory behavior, and sizable magneto-, elasto-, and barocaloric effects result, generating substantial interest and application potential. In this work we expand on a prior small-angle neutron scattering (SANS) study at a single composition (Ni 44 Co 6 Mn 40 Sn 10 ) by exploring all three main regions of the recently established Ni 50–x Co x Mn 40 Sn 10 phase diagram, i.e., at the representative y = 15 composition. Wide temperature and scattering wave-vector range (20–500K, 0.004–0.2Å –1 ) SANS data on x = 2, 6, and 14 polycrystals provide a detailed picture of the evolution in magnetic order and inhomogeneity. Consistent with recent studies with a variety of techniques, phase separation into short-range coexisting ferromagnetic and antiferromagnetic regions is deduced below the martensitic transformation at x = 2 and 6, with average ferromagnetic cluster spacing of ~13 nm. Remarkably, at x = 14, where the martensitic transformation is suppressed and ferromagnetic austenite is stabilized to low temperatures, nanoscopic magnetic inhomogeneity nevertheless persists. Further, distinct ferromagnetic clusters (~36-nm average spacing) in a ferromagnetic matrix are observed at intermediate temperatures, homogenizing into a uniform long-range ordered ferromagnet only at low temperatures. This unusual ferromagnet cluster/ferromagnet matrix inhomogeneity, as well as x -dependent subtleties of the superparamagnetic freezing of ferromagnetic clusters, are discussed in light of 55 Mn nuclear magnetic resonance data, and the recent observation of annealing-induced core/shell nanoprecipitates. The origins of nanoscalemagnetic inhomogeneity are discussed in terms of statistical variations in local composition and structure, tendency to chemical phase separation, and other forms of disorder.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Magnetic polarons and spin-glass behavior in insulating La 1-x Sr x CoO 3 (x = 0.125 and 0.15)

The evolution of magnetic polarons in Sr doped La Co O 3 ( La 1 - x Sr x Co O 3 ) single crystal and polycrystalline samples are investigated by employing dc and ac magnetic measurement and small angle neutron scattering (SANS) techniques. The effect of magnetic field and temperature on magnetic polarons is experimentally studied for La 0.875 Sr 0.125 Co O 3 and La 0.85 Sr 0.15 Co O 3 compounds that belong to the spin glass insulating regime of the broader compositional phase diagram of this system. Langevin analyses of the isothermal magnetization curves in the notional paramagnetic regime prove the existence of magnetic polarons with large moments. The dc field superimposed ac susceptibility data and the analysis of the glassy dynamics prove that the size of polarons in 15% Sr doped crystal increase as the field is increased while the field effect is not visible in the 12.5% Sr doped crystal. A polycrystalline sample of La 0.85 Sr 0.15 Co O 3 is analyzed by SANS experiments, which confirm nonzero correlation length at temperatures far above the macroscopic ordering temperature and hence the presence of magnetic polarons.

36 MATERIALS SCIENCE↗

Size and shape fluctuations of ultrasoft colloids

An ultrasoft colloidal particle fluctuates due to its flexibility. Such fluctuation is essential for colloidal structure and dynamics, but is challenging to quantify experimentally. We use dendrimers as a model system to study the fluctuation of ultrasoft colloids. By considering the dynamic polydispersity in the small-angle neutron scattering (SANS) model and introducing the fluctuation of invasive water into the contrast in SANS, we reveal the fluctuating amplitudes of the size and shape of the dendrimer of generation 6 at finite concentrations. The size fluctuation is suppressed while the shape fluctuation increases as the weight fraction of dendrimers passes 11%. With neutron spin echo data, we suggest that such a crossover originates from the competition between the inter- and intraparticle dynamics. Further investigation on lower-generation samples shows a contrary result, which suggests a structural basis for these dynamic phenomena.

42 ENGINEERING↗

Supercritical carbon dioxide behavior in porous silica aerogel

Analysis of the tails of the small-angle neutron scattering (SANS) intensities relevant to samples formed by porous silica and carbon dioxide at pressures ranging from 0 to 20 MPa and at temperatures of 308 and 353 K confirms that the CO2 fluid must be treated as a two-phase system. The first of these phases is formed by the fluid closer to the silica wall than a suitable distance [delta] and the second by the fluid external to this shell. The sample scattering-length densities and shell thicknesses are determined by the Porod invariants and the oscillations observed in the Porod plots of the SANS intensities. The resulting matter densities of the shell regions (thickness 15-35 {angstrom}) are approximately equal, while those of the outer regions increase with pressure and become equal to the bulk CO2 at the higher pressures only in the low-temperature case.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NIST Standard Reference Material 3600: Absolute Intensity Calibration Standard for Small-Angle X-ray Scattering

The certification of a new standard reference material for small-angle scattering [NIST Standard Reference Material (SRM) 3600: Absolute Intensity Calibration Standard for Small-Angle X-ray Scattering (SAXS)], based on glassy carbon, is presented. Creation of this SRM relies on the intrinsic primary calibration capabilities of the ultra-small-angle X-ray scattering technique. This article describes how the intensity calibration has been achieved and validated in the certified Q range, Q = 0.008–0.25 Å –1 , together with the purpose, use and availability of the SRM. The intensity calibration afforded by this robust and stable SRM should be applicable universally to all SAXS instruments that employ a transmission measurement geometry, working with a wide range of X-ray energies or wavelengths. As a result, the validation of the SRM SAXS intensity calibration using small-angle neutron scattering (SANS) is discussed, together with the prospects for including SANS in a future renewal certification.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Determination of active layer morphology in all-polymer photovoltaic cells

This paper investigates the structure of films spin-coated from blends of the semiconducting polymers poly(3-hexylthiophene-2,5-diyl) (P3HT) and poly{2,6-[4,4-bis-(2-ethylhexyl)-4H-cyclopenta[2,1-b;3,4-b']dithiophene]-alt-4,7(2,1,3-benzo­thiadiazole)} (PCPDTBT). Such blends are of potential use in all-polymer solar cells in which both the acceptor and the donor material generate excitons to contribute to the photocurrent. Prompted by threefold performance gains seen in polymer/fullerene and polymer blend solar cells upon addition of pristine graphene, devices are prepared from P3HT/PCPDTBT blends both with and without graphene. This report focuses on the morphology of the active layer since this is of critical importance in determining performance. Small-angle neutron scattering (SANS) is utilized to study this polymer blend with deuterated P3HT to provide contrast and permit the investigation of buried structure in neat and graphene-doped films. SANS reveals the presence of P3HT crystallites dispersed in an amorphous blend matrix of P3HT and PCPDTBT. The crystallites are approximately disc shaped and do not show any evidence of higher-order structure or aggregation. While the structure of the films does not change with the addition of graphene, there is a perceptible effect on the electronic properties and energy conversion efficiency in solar cells made from such films. Finally, determination of the active layer morphology yields crucial insight into structure–property relationships in organic photovoltaic devices.

14 SOLAR ENERGY↗

Modeling the partitioning of amphiphilic molecules and co-solvents in biomembranes

We report amphiphilic co-solvents can have a significant impact on the structure, organization and physical properties of lipid bilayers. Describing the mutual impact of partitioning and induced structure changes is therefore a crucial consideration for a range of topics such as anesthesia and other pharmacokinetic effects, as well as microbial solvent tolerance in the production of biofuels and other fermentation products, where molecules such as ethanol, butanol or acetic acid might be generated. Small-angle neutron scattering (SANS) is a key method for studying lipid and polymer bilayer structures, with many models for extracting bilayer structure (thickness, area per lipid etc.) from scattering data in use today. However, the molecular details of co-solvent partitioning are conflated with induced changes to bilayer structure, making interpretation and modeling of the scattering curves a challenge with the existing set of models. To address this, a model of a bilayer structure is presented which invokes a two-term partition constant accounting for the localization of the co-solvent within the bilayer. This model was validated using a series of SANS measurements of lipid vesicles in the presence of the co-solvent tetrahydrofuran (THF), showing several strategies of how to deploy the two-parameter partition constant model to describe scattering data and extract both structure and partitioning information from the data. Molecular dynamics simulations are then used to evaluate assumptions of the model, provide additional molecular scale details and illustrate its complementary nature to the data fitting procedure. This approach results in estimates of the partition coefficient for THF in 1,2-dimyristoyl-sn-glycero-3-phosphocholine at 35°C, along with an estimate of the fraction of THF residing in the hydrophobic core of the membrane. The authors envision that this model will be applicable to a wide range of other bilayer/amphiphile interactions and provide the associated code needed to implement this model as a fitting algorithm for scattering data in the SasView suite.

59 BASIC BIOLOGICAL SCIENCES↗

Correlation-aware binning for small-angle neutron scattering via Gaussian-process inference

Binning in small-angle neutron scattering (SANS) is typically performed empirically, with fixed parameters chosen for convenience rather than statistical optimality. Such practices often fail to balance statistical precision and spatial resolution, leading to inconsistencies across instruments and datasets. Here we establish a correlation-aware framework that determines the optimal bin width from first principles by extending the classical Freedman–Diaconis (FD) rule to account for inter-bin correlations with a Gaussian process. In this formulation, the scattering intensity is treated as a smooth stochastic field whose statistical coherence is described by a covariance matrix. Analytical expressions of errors derived from this model yield closed-form criteria that separate the total deviation into contributions from counting noise, aliasing distortion and curvature-dependent correlation effects. Expressed in reduced variables, the resulting dimensionless error surface reveals a continuous transition from the uncorrelated FD regime to the correlation-dominated limit, providing a unified description of noise suppression and resolution control. Because the formulation depends only on the profile characteristics of scattering intensity I(Q), specifically its average intensity and first- and second-order derivatives, it applies generally to any SANS measurement regardless of sample, instrument or geometry. Experimental validation using small- and ultra-small-angle neutron scattering data confirms the predicted scaling behavior, demonstrating that correlation-aware inference systematically reduces mean-squared error and enables information-efficient reproducible data reduction across materials and instruments.

Tung, Chi-Huan [ORNL] (ORCID:0000000221972074)↗

SCOMAP-XD : atomistic deuterium contrast matching for small-angle neutron scattering in biology

The contrast-variation method in small-angle neutron scattering (SANS) is a uniquely powerful technique for determining the structure of individual components in biomolecular systems containing regions of different neutron scattering length density ρ . By altering the ρ of the target solute and the solvent through judicious incorporation of deuterium, the scattering of desired solute features can be highlighted. Most contrast-variation methods focus on highlighting specific bulk solute elements, but not on how the scattering at specific scattering vectors q , which are associated with specific structural distances, changes with contrast. Indeed, many systems exhibit q -dependent contrast effects. Here, a method is presented for calculating both bulk contrast-match points and q -dependent contrast using 3D models with explicit solute and solvent atoms and SASSENA , an explicit-atom SANS calculator. The method calculates the bulk contrast-match points within 2.4% solvent D 2 O accuracy for test protein–nucleic acid and lipid nanodisc systems. The method incorporates a general model for the incorporation of deuterium at non-exchangeable sites that was derived by performing mass spectrometry on green fluorescent protein. The method also decomposes the scattering profile into its component parts and identifies structural features that change with contrast. The method is readily applicable to a variety of systems, will expand the understanding of q -dependent contrast matching and will aid in the optimization of next-generation neutron scattering experiments.

59 BASIC BIOLOGICAL SCIENCES↗

A Modified Sequence-to-point HVAC Load Disaggregation Algorithm

This paper presents a modified sequence-to-point (S2P) algorithm for disaggregating the heat, ventilation, and air conditioning (HVAC) load from the total building electricity consumption. The original S2P model is convolutional neural network (CNN) based, which uses load profiles as inputs. We propose three modifications. First, the input convolution layer is changed from 1D to 2D so that normalized temperature profiles are also used inputs to the S2P model. Second, a drop-out layer is added to improve adaptability and generalizability so that the model trained in one area can be transferred to other geographical areas without labelled HVAC data. Third, a fine-tuning process is proposed for areas with a small amount of labelled HVAC data so that the pre-trained S2P model can be fine-tuned to achieve higher disaggregation accuracy (i.e., better transferability) in other areas. The model is first trained and tested using smart meter and sub-metered HVAC data collected in Austin, Texas. Then, the trained model is tested on two other areas: Boulder, Colorado and San Diego, California. Simulation results show that the proposed modified S2P algorithm outperforms the original S2P model and the support-vector machine based approach in accuracy, adaptability, and transferability.

Ye, Kai↗

SU-E-T-152: Building An Ultrafast, Earthquake Proof Treatment Planning System

Purpose: Situated 20 miles from 5 major fault lines in California’s Bay Area, Stanford Universityhas a critical need for IT infrastructure planning to handle the high probability devastating earthquakes. Recently, a multi-million dollar project has been underway to overhaul Stanford’s radiation oncology information systems, maximizing planning system performance and providing true disaster recovery abilities. An overview of the project will be given with particular focus on lessons learned throughout the build. Methods: In this implementation, two isolated external datacenters provide geographical redundancy to Stanford’s main campus datacenter. Real-time mirroring is made of all data stored to our serial attached network (SAN) storage. In each datacenter, hardware/software virtualization was heavily implemented to maximize server efficiency and provide a robust mechanism to seamlessly migrate users in the event of an earthquake. System performance is routinely assessed through the use of virtualized data robots, able to log in to the system at scheduled times, perform routine planning tasks and report timing results to a performance dashboard. A substantial dose calculation framework (608 CPU cores) has been constructed as part of the implementation. Results: Migration to a virtualized server environment with a high performance SAN has resulted in up to a 45% speed up of common treatment planning tasks. Switching to a 608 core DCF has resulted in a 280% speed increase in dose calculations. Server tuning was found to further improved read/write performance by 20%. Disaster recovery tests are carried out quarterly and, although successful, remain time consuming to perform and verify functionality. Conclusion: Achieving true disaster recovery capabilities is possible through server virtualization, support from skilled IT staff and leadership. Substantial performance improvements are also achievable through careful tuning of server resources and disk read/write operations. Developing a streamlined method to comprehensively test failover is a key requirement to the system’s success.

60 APPLIED LIFE SCIENCES↗