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Results for “Principal Component Analysis”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,063 records · Page 59
All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

Full information acquisition in piezoresponse force microscopy

The information flow from the tip-surface junction to the detector electronics during the piezoresponse force microscopy (PFM) imaging is explored using the recently developed general mode (G-mode) detection. Information-theory analysis suggests that G-mode PFM in the non-switching regime, close to the first resonance mode, contains a relatively small (100–150) number of components containing significant information. The first two primary components are similar to classical PFM images, suggesting that classical lock-in detection schemes provide high veracity information in this case. At the same time, a number of transient components exhibit contrast associated with surface topography, suggesting pathway to separate the two. The number of significant components increases considerably in the non-linear and switching regimes and approaching cantilever resonances, precluding the use of classical lock-in detection and necessitating the use of band excitation or G-mode detection schemes. The future prospects of full information imaging in scanning probe microscopy are discussed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

Brillouin Sensing with PCA, and PCA-Based Neural Networks for Efficient Temperature Monitoring

This work explores peak estimation techniques in Brillouin Optical Time Domain Analysis (BOTDA), emphasizing both accuracy and efficiency. Euclidean distance measurement method is applied to principal components derived from Brillouin Gain Spectrum data. It offers a major speed advantage being 180 170 times faster than traditional curve fitting methods such as Lorentzian curve fitting, while maintaining similar accuracy. Additionally, a PCA- based neural network model shows significant reduction of peak estimation time compared to Lorentzian fitting. Results show Brillouin frequency shift errors lie under 0.75 MHz in both Euclidean distance-based and neural network-based methods, both of which utilize PCA components. For large data sets and long length fibers, PCA- assisted neural network for peak estimation would be an efficient solution.

Distributed optical fiber sensing↗
NASA NTRSDate not supplied

NO2 Anomalies - Economy Attribution and Rapid Climate Response

Using principal component (PC) analysis of 16 years of monthly series of NO2 from OMI/Aura, we show that it is the third PC (PC3) from the full hierarchy of principal modes that is best coupled with the economic indicators. This coupling is positive, i.e. PC3 and economic indicators manifest positive covariance. However, the economic variability can explain only 40% of the information in PC3. Furthermore, this mode by itself explains only 3% of the total deseasonalized NO2 variability. We thus conclude that, while having an unambiguous impact, the economy can be awarded at best third order of importance in driving the deseasonalized NO2 series, i.e. after seasonal variability is removed from the series. Once we identified PC3 as the NO2 mode that is coupled with economic variability, we use this mode as an indicator and look for rapid climate adjustments to that part of NO2 variability that we are confident is coupled with the economic variability. We focus on observational data from the Atmospheric Infrared Sounder (AIRS) on board of NASA Aqua satellite, decompose series of surface skin temperature and clear-sky outgoing longwave radiances (OLR) into principal components, and identify potential impacts of NO2 PC3 on these climate variables.

NO2↗
NASA NTRSDate not supplied

NO2 Anomalies - Economy Attribution and Rapid Climate Response

Using principal component (PC) analysis of 16 years of monthly series of NO2 from OMI/Aura, we show that it is the third PC (PC3) from the full hierarchy of principal modes that is best coupled with the economic indicators. This coupling is positive, i.e. PC3 and economic indicators manifest positive covariance. However, the economic variability can explain only 40%of the information in PC3. Furthermore, this mode by itself explains only 3% of the total deseasonalized NO2 variability. We thus conclude that, while having an unambiguous impact, the economy can be awarded at best third order of importance in driving the deseasonalized NO2 series, i.e. after seasonal variability is removed from the series. Once we identified PC3 as the NO2 mode that is coupled with economic variability, we use this mode as an indicator and look for rapid climate adjustments to that part of NO2 variability that we are confident is coupled with the economic variability. We focus on observational data from the Atmospheric Infrared Sounder (AIRS) on board of NASA Aqua satellite, decompose series of surface skin temperature and clear-sky outgoing longwave radiances (OLR) into principal components, and identify potential impacts of NO2 PC3 on these climate variables.

NO2↗
DOE OSTI2017

Inflow, Outflow, Yields, and Stellar Population Mixing in Chemical Evolution Models

Chemical evolution models are powerful tools for interpreting stellar abundance surveys and understanding galaxy evolution. However, their predictions depend heavily on the treatment of inflow, outflow, star formation efficiency (SFE), the stellar initial mass function, the SN Ia delay time distribution, stellar yields, and stellar population mixing. Using flexCE, a flexible one-zone chemical evolution code, we investigate the effects of and trade-offs between parameters. Two critical parameters are SFE and the outflow mass-loading parameter, which shift the knee in [O/Fe]–[Fe/H] and the equilibrium abundances that the simulations asymptotically approach, respectively. One-zone models with simple star formation histories follow narrow tracks in [O/Fe]–[Fe/H] unlike the observed bimodality (separate high- α and low- α sequences) in this plane. A mix of one-zone models with inflow timescale and outflow mass-loading parameter variations, motivated by the inside-out galaxy formation scenario with radial mixing, reproduces the two sequences better than a one-zone model with two infall epochs. We present [X/Fe]–[Fe/H] tracks for 20 elements assuming three different supernova yield models and find some significant discrepancies with solar neighborhood observations, especially for elements with strongly metallicity-dependent yields. We apply principal component abundance analysis to the simulations and existing data to reveal the main correlations among abundances and quantify their contributions to variation in abundance space. For the stellar population mixing scenario, the abundances of α -elements and elements with metallicity-dependent yields dominate the first and second principal components, respectively, and collectively explain 99% of the variance in the model. flexCE is a python package available at https://github.com/bretthandrews/flexCE.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Diagnosis of Corrosion Process in Nuclear Power Plant Secondary Piping Structures

Corrosion inside secondary pipe structures in Nuclear Power Plants is difficult to detect without intrusion. Statistical and machine learning techniques are used to predict corrosion using pipe vibration data. 3D accelerometers were used to record pipe vibration data in three directions using six sensors. Vibration data were processed using the Hilbert-Huang Transformation, which is known for its adaptable basis function to non-linear and non-stationary signals. Hilbert-Huang Transformation using empirical mode functions generates multiple intrinsic mode functions of different amplitude and frequency levels from raw vibration data. From intrinsic mode functions features are extracted which include phase, energy, entropy, mean, standard deviation, skewness, and kurtosis. Logistic regression using only phase information correctly distinguished mass additions from baseline data in roughly 83% and 85% of the cases. Phase information varied substantially among different baseline runs and within trials of the same run. Random Forest resulted in >95% testing accuracy for both mass addition and mass removal data. Support Vector Machine had ~98% testing accuracy for mass removal and ~92% testing accuracy for mass additions when using Permutation Importance feature selection. When using Principle Component Analysis with Support Vector Machine, testing accuracy was ~68% testing accuracy for mass additions and ~85% testing accuracy for mass.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
NASA NTRS1982

The Use of Principal Components for Creating Improved Imagery for Geometric Control Point Selection

A directed principal component (PC) analysis and its transformation was applied to 7-channel thematic mapper simulator (TMS) data and 4-channel LANDSAT multispectral scanner system (MSS) data collected over the city of Lancaster, Pennsylvania, to create improved imagery for geometric control point selection for image to image registration. Nineteen temporally stable geometric control points, such as road interactions and bridges, were selected for a 236 sq km area. The control points were visible on both the TMS and MSS imagery. On the first attempt the corresponding image control points were selected on both data sets without using the principal components transformation. Many of the road intersection locations were visible but the actual road crossings could not be distinguished. As a result, mensuration errors using raw data exceeded the equivalent of two (79 x 79 m) pixels. The application of a guided principal components transformation yielded TMS and MSS single band images showing improved detail in the scene's urban and residential infrastructure. The PC transformed data sets were then utilized for the reselection of geometric control points. By shown greater detail, control points on both the TMS and MSS imagery could be located with greater precision using the PC transformed data.

Imhoff, M. L.↗
DOE OSTI2019

Machine learning framework for assessment of microbial factory performance

Metabolic models can estimate intrinsic product yields for microbial factories, but such frameworks struggle to predict cell performance (including product titer or rate) under suboptimal metabolism and complex bioprocess conditions. On the other hand, machine learning, complementary to metabolic modeling necessitates large amounts of data. Building such a database for metabolic engineering designs requires significant manpower and is prone to human errors and bias. We propose an approach to integrate data-driven methods with genome scale metabolic model for assessment of microbial bio-production (yield, titer and rate). Using engineered E. coli as an example, we manually extracted and curated a data set comprising about 1200 experimentally realized cell factories from ~100 papers. We furthermore augmented the key design features (e.g., genetic modifications and bioprocess variables) extracted from literature with additional features derived from running the genome-scale metabolic model iML1515 simulations with constraints that match the experimental data. Then, data augmentation and ensemble learning (e.g., support vector machines, gradient boosted trees, and neural networks in a stacked regressor model) are employed to alleviate the challenges of sparse, non-standardized, and incomplete data sets, while multiple correspondence analysis/principal component analysis are used to rank influential factors on bio-production. The hybrid framework demonstrates a reasonably high cross-validation accuracy for prediction of E.coli factory performance metrics under presumed bioprocess and pathway conditions (Pearson correlation coefficients between 0.8 and 0.93 on new data not seen by the model).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Statistical Inference Over Persistent Homology Predicts Fluid Flow in Porous Media

Here, we statistically infer fluid flow and transport properties of porous materials based on their geometry and connectivity, without the need for detailed We summarize structure by persistent homology and then determines the similarity of structures using image analysis and statistics. Longer term, this may enable quick and automated categorization of rocks into known archetypes. We first compute persistent homology of binarized 3D images of material subvolume samples. The persistence parameter is the signed Euclidean distance from inferred material interfaces, which captures the distribution of sizes of pores and grains. Each persistence diagram is converted into an image vector. Here, we infer structural similarity by calculating image similarity. For each image vector, we compute principal components to extract features. We fit statistical models to features estimates material permeability, tortuosity, and anisotropy. We develop a Structural SIMilarity index to determine statistical representative elementary volumes.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Solvent effects on differentiation of mouse brain tissue using laser microdissection ‘cut and drop’ sampling with direct mass spectral analysis

Rationale: Laser microdissection-liquid vortex capture/electrospray ionization mass spectrometry (LMD-LVC/ESI-MS) has potential for on-line classification of tissue but an investigation into what analytical conditions provide best spectral differentiation has not been conducted. The effects of solvent, ionization polarity, and spectral acquisition parameters on differentiation of mouse brain tissue regions are described.Methods: Individual 40 × 40 μm microdissections from cortex, white, grey, granular, and nucleus regions of mouse brain tissue were analyzed using different capture/ESI solvents, in positive and negative ion mode ESI, using time-of-flight (TOF)-MS and sequential window acquisitions of all theoretical spectra (SWATH)-MS (a permutation of tandem-MS), and combinations thereof. Principal component analysis-linear discriminant analysis (PCA-LDA), applied to each mass spectral dataset, was used to determine the accuracy of differentiation of mouse brain tissue regions. Results: Mass spectral differences associated with capture/ESI solvent composition manifested as altered relative distributions of ions rather than the presence or absence of unique ions. In negative ion mode ESI, 80/20 (v/v) methanol/water yielded spectra with low signal/noise ratios relative to other solvents. PCA-LDA models acquired using 90/10 (v/v) methanol/chloroform differentiated tissue regions with 100% accuracy while data collected using methanol misclassified some samples. The combination of SWATH-MS and TOF-MS data improved differentiation accuracy.Conclusions: Combined TOF-MS and SWATH-MS data differentiated white, grey, granular, and nucleus mouse tissue regions with greater accuracy than when solely using TOF-MS data. Using 90/10 (v/v) methanol/chloroform, tissue regions were perfectly differentiated. Lastly, these results will guide future studies looking to utilize the potential of LMD-LVC/ESI-MS for tissue and disease differentiation.

47 OTHER INSTRUMENTATION↗
DOE OSTI2020

Data-Driven Event Detection of Power Systems Based on Unequal-Interval Reduction of PMU Data and Local Outlier Factor

With the deployment of phasor measurement units (PMU) and wide area measurement system (WAMS), it is feasible to have an insight into the events occurred in power systems based on measured data. Thus, a novel data-driven algorithm based on local outlier factor (LOF) is proposed in this work to detect and locate events in power systems using reduced PMU data. First, the unequal-interval reduction method is presented to reduce the scale of PMU data in sub-stations and reconstruct it in master station of WAMS, which can relieve the burden of communication systems. Then, principle component analysis (PCA)-based similarity search method is proposed to measure the differences of operation state between any two buses. Next, LOF is presented to detect the abnormal events in power systems, and employed to determine the region of the event source. Finally, six cases from the Western electricity coordinating council (WECC) 179-bus power system, a case from the South China power system (SCPS), and a case from the Guangdong power system (GDPS) are utilized to demonstrate the effectiveness of the proposed algorithm. Overall, the results show that proposed algorithm is effective and can be applied to event detection, event location, and online monitoring, which can enhance the situation awareness ability of power system operators.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2021

Portable quantitative confocal Raman spectroscopy: Non-destructive approach of the carbonation chemistry and kinetics

Highlights: • Raman spectroscopy was used to monitor carbonation of portlandite • The approach was non-destructive, continuous, and performed within the material • Carbonation was identified coupling Raman spectroscopy and chemometrics • Kinetics was calculated for one portlandite thickness at different CO{sub 2}-percentages Carbonation is one major alteration process of cementitious materials. It can be monitored through several methods, all destructive. In this study, some preliminary investigations were conducted to monitor the carbonation process of pure portlandite with an in situ and non-destructive spectroscopic method. This complementary approach was motivated by a literature review indicating the benefits of Raman spectroscopy, but requiring innovative approaches for data acquisition and analysis. The material was selected to validate this spectroscopic monitoring, coupled with chemometrics tools to allowing an early detection of the carbonation reaction through a structure identified in the spectra data population. The carbonation occurred abruptly, and spectra analysis indicated the occurrence of phases synonymous of microstructural evolutions. Varying the atmospheric percentage of CO{sub 2} (0.04% - 4%) conducted to an appreciation of the kinetics of the carbonation front through the same thickness of portlandite.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Dataset_for_Conserved_macromolecular_architecture_of_Poplar_secondary_cell_walls_revealed_by_ssNMR_and_atomistic_modeling

This dataset contains solid-state 13C NMR data and atomistic molecular dynamics simulation files supporting the study of nanoscale secondary cell wall architecture across 13 genetically diverse Populus trichocarpa genotypes grown under uniform greenhouse conditions in 13C-enriched CO2 atmospheres (~89% 13C enrichment).The dataset contains two collections of solid-state 13C NMR data. (1) 200 MHz data (Bruker Avance III HD, 4 mm HX probe, 10 kHz MAS): raw Bruker TopSpin experiment folders and DMFIT-exported ascii spectra for selective and non-selective 1D 13C-13C spin diffusion experiments (3000 ms mixing) used to quantify inter-polymer spatial proximities, and short-mixing (1 ms) reference spectra used for polymeric abundance quantification by spectral deconvolution. (2) 600 MHz data (Bruker Avance III, 1.6 mm PhoenixNMR HXY probe, 30 kHz MAS): raw Bruker TopSpin experiment folders containing 2D CORD, 2D CP-INADEQUATE, and 13C/1H relaxation (T1, T1rho) experiments for all 13 genotypes, with processed Excel workbooks per experiment type. Molecular dynamics simulation code, coordinate files, and analysis scripts (NAMD/CHARMM/Python) for six atomistic cell wall models are included. Summarized ssNMR data are compiled into a single excel file and subjected to statistical analysis. Multivariate analysis code (PCA, Pearson correlation) and summary data are provided as excel worksheets and Jupyter notebooks (Python 3).

09 BIOMASS FUELS↗
NASA NTRS2003

Enabling computer decisions based on EEG input

Multilayer neural networks were successfully trained to classify segments of 12-channel electroencephalogram (EEG) data into one of five classes corresponding to five cognitive tasks performed by a subject. Independent component analysis (ICA) was used to segregate obvious artifact EEG components from other sources, and a frequency-band representation was used to represent the sources computed by ICA. Examples of results include an 85% accuracy rate on differentiation between two tasks, using a segment of EEG only 0.05 s long and a 95% accuracy rate using a 0.5-s-long segment.

Validation Studies↗
DOE OSTI2022

Python Codebase and Jupyter Notebooks - Applications of Machine Learning Techniques to Geothermal Play Fairway Analysis in the Great Basin Region, Nevada

Git archive containing Python modules and resources used to generate machine-learning models used in the "Applications of Machine Learning Techniques to Geothermal Play Fairway Analysis in the Great Basin Region, Nevada" project. This software is licensed as free to use, modify, and distribute with attribution. Full license details are included within the archive. See "documentation.zip" for setup instructions and file trees annotated with module descriptions.

Brown, Stephen↗