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At least 1,063 records · Page 59

Semantic Pattern Analysis for Verbal Fluency Based Assessment of Neurological Disorders

In this paper, we present preliminary results of semantic pattern analysis of verbal fluency tests used for assessing cognitive psychological and neuropsychological disorders. We posit that recent advances in semantic reasoning and artificial intelligence can be combined to create a standardized computer-aided diagnosis tool to automatically evaluate and interpret verbal fluency tests. Towards that goal, we derive novel semantic similarity (phonetic, phonemic and conceptual) metrics and present the predictive capability of these metrics on a de-identified dataset of participants with and without neurological disorders.

concept reasoning↗

Understanding Occupancy Patterns in a Commercial Space

Heating, ventilation, and air conditioning (HVAC) is a prime source of energy consumption in the US. In 2006, approximately 35% of energy in the US was used for HVAC [1]. Usually building operators use a static schedule for controlling HVAC systems without having a deeper understanding of how many people use the building at different times of the day. In addition, HVAC systems operate by assuming maximum occupancy in each room, which leads to a significant energy waste, e.g., an HVAC system providing ventilation for 30 people when there are only 10 people in a room. Considering how many people use different rooms at different times of the day is very crucial for achieving building energy efficiency and providing occupant comfort. There have been several attempts to collect long term occupancy patterns from office buildings, e.g., Mitsubishi’s Electronic Research Lab (MERL) dataset [14] and Colorado School of Mines (CSMBB) dataset. However, PIR motion detectors are used in these projects for sensing occupancy and hence these datasets only reflect whether a room is occupied or not without revealing the actual person count. Similar datasets are also collected from households. Only a few datasets from commercial spaces capture actual person count, and even in these cases, the data collection period was very limited, e.g., in [3] only 5 days of occupancy data is collected as ground truth. We are the first to collect long term (9 months) occupancy data (people count) from an 11,000 square foot commercial office (second floor of Bosch Research and Technology Center Pittsburgh). In this paper, we outline some statistical results from our empirical study and explore their implications for saving energy.

42 ENGINEERING↗

Observed and modeled patterns of covariability between low-level cloudiness and the structure of the trade-wind layer

We present patterns of covariability between low-level cloudiness and the trade-wind boundary layer structure using long-term measurements at a site representative of dynamical regimes with moderate subsidence or weak ascent. We compare these with ECMWF’s Integrated Forecast System and 10 CMIP5 models. By using single-time step output at a single location, we find that models can produce a fairly realistic trade-wind layer structure in long-term means, but with unrealistic variability at shorter-time scales. The unrealistic variability in modeled cloudiness near the lifting condensation level (LCL) is due to stronger than observed relationships with mixed-layer relative humidity (RH) and temperature stratification at the mixed-layer top. Those relationships are weak in observations, or even of opposite sign, which can be explained by a negative feedback of convection on cloudiness. Cloudiness near cumulus tops at the tradewind inversion instead varies more pronouncedly in observations on monthly time scales, whereby larger cloudiness relates to larger surface winds and stronger trade-wind inversions. However, these parameters appear to be a prerequisite, rather than strong controlling factors on cloudiness, because they do not explain submonthly variations in cloudiness. Models underestimate the strength of these relationships and diverge in particular in their responses to large-scale vertical motion. No model stands out by reproducing the observed behavior in all respects. As a result, these findings suggest that climate models do not realistically represent the physical processes that underlie the coupling between trade-wind clouds and their environments in present-day climate, which is relevant for how we interpret modeled cloud feedbacks.

58 GEOSCIENCES↗

Root traits explain observed tundra vegetation nitrogen uptake patterns: Implications for trait-based land models: Tundra N Uptake Model-Data Comparison

Ongoing climate warming will likely perturb vertical distributions of nitrogen availability in tundra soils through enhancing nitrogen mineralization and releasing previously inaccessible nitrogen from frozen permafrost soil. But, arctic tundra responses to such changes are uncertain, because of a lack of vertically explicit nitrogen tracer experiments and untested hypotheses of root nitrogen uptake under the stress of microbial competition implemented in land models. We conducted a vertically explicit 15N tracer experiment for three dominant tundra species to quantify plant N uptake profiles. Then we applied a nutrient competition model (N-COM), which is being integrated into the ACME Land Model, to explain the observations. Observations using an 15 N tracer showed that plant N uptake profiles were not consistently related to root biomass density profiles, which challenges the prevailing hypothesis that root density always exerts first-order control on N uptake. By considering essential root traits (e.g., biomass distribution and nutrient uptake kinetics) with an appropriate plant-microbe nutrient competition framework, our model reasonably reproduced the observed patterns of plant N uptake. Additionally, we show that previously applied nutrient competition hypotheses in Earth System Land Models fail to explain the diverse plant N uptake profiles we observed. These results cast doubt on current climate-scale model predictions of arctic plant responses to elevated nitrogen supply under a changing climate and highlight the importance of considering essential root traits in large-scale land models. Finally, we provided suggestions and a short synthesis of data availability for future trait-based land model development.

15N tracer↗

Full-flow-regime storage-streamflow correlation patterns provide insights into hydrologic functioning over the continental US

Interannual changes in low, median, and high regimes of streamflow have important implications for flood control, irrigation, and ecologic and human health. The Gravity Recovery and Climate Experiment (GRACE) satellites record global terrestrial water storage anomalies (TWSA), providing an opportunity to observe, interpret, and potentially utilize the complex relationships between storage and full-flow-regime streamflow. Here we show that utilizable storage-streamflow correlations exist throughout vastly different climates in the continental US (CONUS) across low- to high-flow regimes. A panoramic framework, the storage-streamflow correlation spectrum (SSCS), is proposed to examine macroscopic gradients in these relationships. SSCS helps form, corroborate or reject hypotheses about basin hydrologic behaviors. SSCS patterns vary greatly over CONUS with climate, land surface, and geologic conditions. Data mining analysis suggests that for catchments with hydrologic settings that favor storage over runoff, e.g., a large fraction of precipitation as snow, thick and highly-permeable permeable soil, SSCS values tend to be high. Based on our results, we form the hypotheses that groundwater flow dominates streamflows in South-eastern CONUS and Great Plains, while thin soils in a belt along the Appalachian Plateau impose a limit on water storage. SSCS also suggests shallow water table caused by high-bulk density soil and flat terrain induces rapid runoff in several regions. Our results highlight the importance of subsurface properties and groundwater flow in capturing flood and drought. Finally, we propose that SSCS can be used as a fundamental hydrologic signature to constrain models and to provide insights that lead us to better understand hydrologic functioning.

54 ENVIRONMENTAL SCIENCES↗

Genesis, Pathways, and Terminations of Intense Global Water Vapor Transport in Association with Large-Scale Climate Patterns: IVT-CONNECT

The CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport data from the NASA's Modern-Era Retrospective Analysis for Research and Applications – Version 2 reanalysis product for the period of 1980 to 2016. The algorithm generates life-cycle records in time and space evolving strong vapor transport events. We show five regions, located in the midlatitudes, where events typically exist (off the coast of the southeast United States, eastern China, eastern South America, off the southern tip of South Africa, and in the southeastern Pacific Ocean). Global statistics show distinct genesis and termination regions and global seasonal peak frequency during Northern Hemisphere late fall/winter and Southern Hemisphere winter. In addition, the event frequency and geographical location are shown to be modulated by the Arctic Oscillation, Pacific North American Pattern, and the quasi-biennial oscillation. Moreover, a positive linear trend in the annual number of objects is reported, increasing by 3.58 objects year-over-year.

54 ENVIRONMENTAL SCIENCES↗

Spatiotemporal Patterns of Precipitation-Modulated Landslide Deformation From Independent Component Analysis of InSAR Time Series

We present that long-term landslide deformation is disruptive and costly in urbanized environments. We rely on TerraSAR-X satellite images (2009–2014) and an improved data processing algorithm (SqueeSAR™) to produce an exceptionally dense Interferometric Synthetic Aperture Radar ground deformation time series for the San Francisco East Bay Hills. Independent and principal component analyses of the time series reveal four distinct spatial and temporal surface deformation patterns in the area around Blakemont landslide, which we relate to different geomechanical processes. Two components of time-dependent landslide deformation isolate continuous motion and motion driven by precipitation-modulated pore pressure changes controlled by annual seasonal cycles and multiyear drought conditions. Two components capturing more widespread seasonal deformation separate precipitation-modulated soil swelling from annual cycles that may be related to groundwater level changes and thermal expansion of buildings. Lastly, high-resolution characterization of landslide response to precipitation is a first step toward improved hazard forecasting.

54 ENVIRONMENTAL SCIENCES↗

Patterned growth of p-type MoS 2 atomic layers using sol-gel as precursor

2D layered MoS 2 has drawn intense attention for its applications in flexible electronic, optoelectronic, and spintronic devices. Most of the MoS 2 atomic layers grown by conventional chemical vapor deposition techniques are n-type due to the abundant sulfur vacancies. Facile production of MoS 2 atomic layers with p-type behavior, however, remains challenging. Here, a novel one-step growth has been developed to attain p-type MoS 2 layers in large scale by using Mo-containing sol–gel, including 1% tungsten (W). Atomic-resolution electron microscopy characterization reveals that small tungsten oxide clusters are commonly present on the as-grown MoS 2 film due to the incomplete reduction of W precursor at the reaction temperature. These omnipresent small tungsten oxide clusters contribute to the p-type behavior, as verified by density functional theory calculations, while preserving the crystallinity of the MoS 2 atomic layers. The Mo containing sol–gel precursor is compatible with the soft-lithography techniques, which enables patterned growth of p-type MoS 2 atomic layers into regular arrays with different shapes, holding great promise for highly integrated device applications. Lastly, an atomically thin p–n junction is fabricated by the as-prepared MoS 2 , which shows strong rectifying behavior.

36 MATERIALS SCIENCE↗

Fabrication of Arrays of Topological Solitons in Patterned Chiral Liquid Crystals for Real-Time Observation of Morphogenesis

Topological solitons have knotted continuous field configurations embedded in a uniform background, and occur in cosmology, biology, and electromagnetism. However, real-time observation of their morphogenesis and dynamics is still challenging because their size and timescale are enormously large or tiny. Liquid crystal (LC) structures are promising candidates for a model-system to study the morphogenesis of topological solitons, enabling direct visualization due to the proper size and timescale. We report a new way is found to rationalize the real-time observation of the generation and transformation of topological solitons using cholesteric LCs confined in patterned substrates. The experimental demonstration shows the topologically protected structures arise via the transformation of topological defects. Numerical modeling based on minimization of free energy closely reconstructs the experimental findings. The fundamental insights obtained from the direct observations pose new theoretical challenges in understanding the morphogenesis of different types of topological solitons within a broad range of scales.

36 MATERIALS SCIENCE↗

Directed Self-Assembly of Hierarchical Supramolecular Block Copolymer Thin Films on Chemical Patterns

A long-range ordered lamellae-within-lamellae hierarchical structure is reported for the first time through the directed self-assembly of supramolecular polymer-surfactant thin films on chemical patterns with density multiplication. The coassembly of supramolecular system with gold nanoparticles is further achieved to create a hybrid material with well-organized nanoparticle arrays, expanding the palette of morphologies and structures available for nanoscale fabrication.

Wu, Guang-Peng↗

Construction of Reconfigurable and Polymorphic DNA Origami Assemblies with Coiled‐Coil Patches and Patterns

Abstract DNA origami nanodevices achieve programmable structure and tunable mechanical and dynamic properties by leveraging the sequence‐specific interactions of nucleic acids. Previous advances have also established DNA origami as a useful building block to make well‐defined micron‐scale structures through hierarchical self‐assembly, but these efforts have largely leveraged the structural features of DNA origami. The tunable dynamic and mechanical properties also provide an opportunity to make assemblies with adaptive structures and properties. Here the integration of DNA origami hinge nanodevices and coiled‐coil peptides are reported into hybrid reconfigurable assemblies. With the same dynamic device and peptide interaction, it is made multiple higher‐order assemblies (i.e., polymorphic assembly) by organizing clusters of peptides into patches or arranging single peptides into patterns on the surfaces of DNA origami to control the relative orientation of devices. The coiled‐coil interactions are used to construct circular and linear assemblies whose structure and mechanical properties can be modulated with DNA‐based reconfiguration. Reconfiguration of linear assemblies leads to micron scale motions and ≈2.5‐10‐fold increase in bending stiffness. The results provide a foundation for stimulus‐responsive hybrid assemblies that can adapt their structure and properties in response to nucleic acid, peptide, protein, or other triggers.

59 BASIC BIOLOGICAL SCIENCES↗

Using Ambient Ion Beams to Write Nanostructured Patterns for Surface Enhanced Raman Spectroscopy

Electrolytic spray deposition was used to pattern surfaces with 2D metallic nanostructures. Spots that contain silver nanoparticles (AgNP) were created by landing solvated silver ions at desired locations using electrically floated masks to focus the metal ions to an area as little as 20 mm in diameter. The AgNPs formed are unprotected and their aggregates can be used for surface-enhanced Raman spectroscopy (SERS). The morphology and SERS activity of the NP structures were controlled by the surface coverage of landed silver ions. The NP structures created could be used as substrates onto which SERS samples were deposited or prepared directly on top of predeposited samples of interest. The evenly distributed hot spots in the micron-sized aggregates had an average SERS enhancement factor of 108. The surfaces showed SERS activity when using lasers of different wavelengths (532, 633, and 785 nm) and were stable in air.

Environmental Molecular Sciences Laboratory↗

US alternative jet fuel deployment scenario analyses identifying key drivers and geospatial patterns for the first billion gallons ,

The aviation sector's commitments to carbon-neutral growth in international aviation starting in 2020, and the desire to improve supply surety, price stability, and the environmental performance of aviation fuels, have led to broad interest in sustainable alternative jet fuels. Here, we use the system-dynamics-based biomass scenario model (BSM), focused on alternative jet fuel production capacity evolution, and the geospatially explicit Freight and Fuel Transportation Optimization Tool (FTOT), focused on optimal feedstock and fuel flows over the transportation system, to explore the incentive effects on alternative jet fuel production capacity trajectories and potential geospatial patterns of production and delivery in the USA. Scenarios presented here focus on readily available waste feedstocks (waste fats, oils and greases, municipal solid waste, and crop and forestry residues) and conversion technologies included in the ASTM D7566 synthesized aviation turbine fuels specification. The BSM modeling of possible deployment trajectories from 2015 to 2045 suggests that up to 8 billion gallons may be available by 2045 depending on the policies and incentives implemented. Both approaches suggest that 200 million to 1 billion gallons per year of alternative jet fuel production are possible in 2030 given multiple incentives and a favorable investment climate, and that capital costs and technology maturation rates will affect deployment of different fuel production technologies, and therefore the feedstocks needed. Further collaboration on these modeling approaches would reduce methodological blind spots while providing insights into future industry trajectories.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Kinetic isotope effects significantly influence intracellular metabolite 13 C labeling patterns and flux determination

Rigorous mathematical modeling of carbon-labeling experiments allows estimation of fluxes through the pathways of central carbon metabolism, yielding powerful information for basic scientific studies as well as for a wide range of applications. However, the mathematical models that have been developed for flux determination from 13 C labeling data have commonly neglected the influence of kinetic isotope effects on the distribution of 13 C label in intracellular metabolites, as these effects have often been assumed to be inconsequential. We have used measurements of the 13 C isotope effects on the pyruvate dehydrogenase enzyme from the literature to model isotopic fractionation at the pyruvate node and quantify the modeling errors expected to result from the assumption that isotope effects are negligible. We show that under some conditions kinetic isotope effects have a significant impact on the 13 C labeling patterns of intracellular metabolites, and the errors associated with neglecting isotope effects in 13 C-metabolic flux analysis models can be comparable in size to measurement errors associated with GC–MS. Thus, kinetic isotope effects must be considered in any rigorous assessment of errors in 13 C labeling data, goodness-of-fit between model and data, confidence intervals of estimated metabolic fluxes, and statistical significance of differences between estimated metabolic flux distributions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Geographic patterns in morphometric and genetic variation for coyote populations with emphasis on southeastern coyotes

Prior to 1900, coyotes (Canis latrans) were restricted to the western and central regions of North America, but by the early 2000s, coyotes became ubiquitous throughout the eastern United States. Information regarding morphological and genetic structure of coyote populations in the southeastern United States is limited, and where data exist, they are rarely compared to those from other regions of North America. We assessed geographic patterns in morphology and genetics of coyotes with special consideration of coyotes in the southeastern United States. Mean body mass of coyote populations increased along a west-to-east gradient, with southeastern coyotes being intermediate to western and northeastern coyotes. Similarly, principal component analysis of body mass and linear body measurements suggested that southeastern coyotes were intermediate to western and northeastern coyotes in body size but exhibited shorter tails and ears from other populations. Genetic analyses indicated that southeastern coyotes represented a distinct genetic cluster that differentiated strongly from western and northeastern coyotes. We postulate that southeastern coyotes experienced lower immigration from western populations than did northeastern coyotes, and over time, genetically diverged from both western and northeastern populations. Coyotes colonizing eastern North America experienced different selective pressures than did stable populations in the core range, and we offer that the larger body size of eastern coyotes reflects an adaptation that improved dispersal capabilities of individuals in the expanding range.

59 BASIC BIOLOGICAL SCIENCES↗

Global pattern and controls of soil microbial metabolic quotient

The microbial metabolic quotient (MMQ), microbial respiration per unit of biomass, is a fundamental factor controlling heterotrophic respiration, the largest carbon flux in soils. The magnitude and controls of MMQ at regional scale remain uncertain. We compiled a comprehensive data set of MMQ to investigate the global patterns and controls of MMQ in top 30 cm soils. Published MMQ values, generally measured in laboratory microcosms, were adjusted on ambient soil temperature using long-term (30 yr) average site soil temperature and a Q10 = 2. The area-weighted global average of MMQ_Soil is estimated as 1.8 (1.5–2.2) (95% confidence interval) lmol C•h -1 •mmol -1 microbial biomass carbon (MBC) with substantial variations across biomes and between cropland and natural ecosystems. Variation was most closely associated with biological factors, followed by edaphic and meteorological parameters. MMQ_Soil was greatest in sandy clay and sandy clay loam and showed a pH maximum of 6.7 - 0.1 (mean ± se). At large scale, MMQ_Soil varied with latitude and mean annual temperature (MAT), and was negatively correlated with microbial N:P ratio, supporting growth rate theory. These trends led to large differences in MMQ_Soil between natural ecosystems and cropland. When MMQ was adjusted to 11°C (MMQ_Ref), the global MAT in the top 30 cm of soils, the area-weighted global averages of MMQ_Ref was 1.5 (1.3–1.8) lmol C•mmol MBC -1 •h -1 . The values, trends, and controls of MMQ_Soil add to our understanding of soil microbial influences on soil carbon cycling and could be used to represent microbial activity in global carbon models.

59 BASIC BIOLOGICAL SCIENCES↗

Spatiotemporal patterns of evapotranspiration along the North American east coast as influenced by multiple environmental changes

The North American east coast has experienced significant land-use and climate changes since the beginning of the 20th century. In this study, using the Dynamic Land Ecosystem Model 2.0 driven by time-series input data of land use, climate and atmospheric CO 2 , we examined how these driving forces have affected the spatiotemporal trends and variability of evapotranspiration (ET) in this region during 1901–2008. Annual ET in the North American east coast during this period was 648.3 ± 38.6 mm/year and demonstrated an increasing trend. Factorial model simulations indicated that climate variability explained 76% of the inter-annual ET variability. Although land-use change only explained 16% of the ET temporal variability, afforestation induced the upward trend of ET and increased annual ET by 12.8 mm/year. Elevated atmospheric CO 2 reduced annual ET by 0.84 mm, and its potential impacts under future atmospheric CO 2 levels could be much larger than estimates for the historical 1901–2008 period. Climate change determined the spatial pattern of ET changes across the entire study area, whereas land-use changes dramatically affected ET in watersheds with significant land conversions. In spite of the multiple benefits from afforestation, its impacts on water resources should be considered in future land-use policy making. As a result, elevated ET may also affect fresh water availability for the increasing social and economic water demands.

54 ENVIRONMENTAL SCIENCES↗