Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Function Estimation”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,063 records · Page 59
All sourcesNASA NTRSDOE OSTI
DOE OSTI2012

Absorption and scattering of laser radiation by the diffusion flame of aviation kerosene

The absorption coefficient of the radiation of a repetitively pulsed Nd : YAG laser with an average output power up to 6 W and of a cw ytterbium optical fibre laser with an output power up to 3 kW was measured in the diffusion flame of aviation kerosene burning on a free surface in the atmospheric air. The absorption coefficient as a function of flame length, radiation power, and radiation intensity, which was varied in the {approx}10{sup 3} - 5 Multiplication-Sign 10{sup 4} W cm{sup -2} range, was obtained for two distances (1 and 2 cm) between the laser beam axis and the surface. The coefficient of radiation absorption by kerosene flame was compared with that in ethanol and kerosene - ethanol mixture flames. The radiation power scattered by a small segment of the kerosene flame irradiated by Nd : YAG laser radiation was measured as a function of longitudinal and azimuthal coordinates. An estimate was made of the total scattered radiation power.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2017

The weighted priors approach for combining expert opinions in logistic regression experiments

When modeling the reliability of a system or component, it is not uncommon for more than one expert to provide very different prior estimates of the expected reliability as a function of an explanatory variable such as age or temperature. Our goal in this paper is to incorporate all information from the experts when choosing a design about which units to test. Bayesian design of experiments has been shown to be very successful for generalized linear models, including logistic regression models. We use this approach to develop methodology for the case where there are several potentially non-overlapping priors under consideration. While multiple priors have been used for analysis in the past, they have never been used in a design context. The Weighted Priors method performs well for a broad range of true underlying model parameter choices and is more robust when compared to other reasonable design choices. Finally, we illustrate the method through multiple scenarios and a motivating example. Additional figures for this article are available in the online supplementary information.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2011

BINARY FORMATION MECHANISMS: CONSTRAINTS FROM THE COMPANION MASS RATIO DISTRIBUTION

We present a statistical comparison of the mass ratio distribution of companions, as observed in different multiplicity surveys, to the most recent estimate of the single-object mass function. The main goal of our analysis is to test whether or not the observed companion mass ratio distribution (CMRD) as a function of primary star mass and star formation environment is consistent with having been drawn from the field star initial mass function (IMF). We consider samples of companions for M dwarfs, solar-type stars, and intermediate-mass stars, both in the field as well as clusters or associations, and compare them with populations of binaries generated by random pairing from the assumed IMF for a fixed primary mass. With regard to the field we can reject the hypothesis that the CMRD was drawn from the IMF for different primary mass ranges: the observed CMRDs show a larger number of equal-mass systems than predicted by the IMF. This is in agreement with fragmentation theories of binary formation. For the open clusters {alpha} Persei and the Pleiades we also reject the IMF random-pairing hypothesis. Concerning young star-forming regions, currently we can rule out a connection between the CMRD and the field IMF in Taurus but not in Chamaeleon I. Larger and different samples are needed to better constrain the result as a function of the environment. We also consider other companion mass functions and we compare them with observations. Moreover the CMRD both in the field and clusters or associations appears to be independent of separation in the range covered by the observations. Combining therefore the CMRDs of M (1-2400 AU) and G (28-1590 AU) primaries in the field and intermediate-mass primary binaries in Sco OB2 (29-1612 AU) for mass ratios, q = M{sub 2}/M{sub 1}, from 0.2 to 1, we find that the best chi-square fit follows a power law dN/dq{proportional_to}q {sup {beta}}, with {beta} = -0.50 {+-} 0.29, consistent with previous results. Finally, we note that the Kolmogorov-Smirnov test gives a {approx}1% probability of the observed CMRD in the Pleiades and Taurus being consistent with that observed for solar-type primaries in the field over comparable primary mass range. This highlights the value of using CMRDs to understand which star formation events contribute most to the field.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2012

PROPAGATING WAVE PHENOMENA DETECTED IN OBSERVATIONS AND SIMULATIONS OF THE LOWER SOLAR ATMOSPHERE

We present high-cadence observations and simulations of the solar photosphere, obtained using the Rapid Oscillations in the Solar Atmosphere imaging system and the MuRAM magnetohydrodynamic (MHD) code, respectively. Each data set demonstrates a wealth of magnetoacoustic oscillatory behavior, visible as periodic intensity fluctuations with periods in the range 110-600 s. Almost no propagating waves with periods less than 140 s and 110 s are detected in the observational and simulated data sets, respectively. High concentrations of power are found in highly magnetized regions, such as magnetic bright points and intergranular lanes. Radiative diagnostics of the photospheric simulations replicate our observational results, confirming that the current breed of MHD simulations are able to accurately represent the lower solar atmosphere. All observed oscillations are generated as a result of naturally occurring magnetoconvective processes, with no specific input driver present. Using contribution functions extracted from our numerical simulations, we estimate minimum G-band and 4170 A continuum formation heights of 100 km and 25 km, respectively. Detected magnetoacoustic oscillations exhibit a dominant phase delay of -8 Degree-Sign between the G-band and 4170 A continuum observations, suggesting the presence of upwardly propagating waves. More than 73% of MBPs (73% from observations and 96% from simulations) display upwardly propagating wave phenomena, suggesting the abundant nature of oscillatory behavior detected higher in the solar atmosphere may be traced back to magnetoconvective processes occurring in the upper layers of the Sun's convection zone.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

THE OBSCURED FRACTION OF ACTIVE GALACTIC NUCLEI IN THE XMM-COSMOS SURVEY: A SPECTRAL ENERGY DISTRIBUTION PERSPECTIVE

The fraction of active galactic nucleus (AGN) luminosity obscured by dust and re-emitted in the mid-IR is critical for understanding AGN evolution, unification, and parsec-scale AGN physics. For unobscured (Type 1) AGNs, where we have a direct view of the accretion disk, the dust covering factor can be measured by computing the ratio of re-processed mid-IR emission to intrinsic nuclear bolometric luminosity. We use this technique to estimate the obscured AGN fraction as a function of luminosity and redshift for 513 Type 1 AGNs from the XMM-COSMOS survey. The re-processed and intrinsic luminosities are computed by fitting the 18 band COSMOS photometry with a custom spectral energy distribution fitting code, which jointly models emission from hot dust in the AGN torus, from the accretion disk, and from the host galaxy. We find a relatively shallow decrease of the luminosity ratio as a function of L{sub bol}, which we interpret as a corresponding decrease in the obscured fraction. In the context of the receding torus model, where dust sublimation reduces the covering factor of more luminous AGNs, our measurements require a torus height that increases with luminosity as h ∝ L{sub bol}{sup 0.3-0.4}. Our obscured-fraction-luminosity relation agrees with determinations from Sloan Digital Sky Survey censuses of Type 1 and Type 2 quasars and favors a torus optically thin to mid-IR radiation. We find a much weaker dependence of the obscured fraction on 2-10 keV luminosity than previous determinations from X-ray surveys and argue that X-ray surveys miss a significant population of highly obscured Compton-thick AGNs. Our analysis shows no clear evidence for evolution of the obscured fraction with redshift.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

The core mass growth and stellar lifetime of thermally pulsing asymptotic giant branch stars

We establish new constraints on the intermediate-mass range of the initial-final mass relation, and apply the results to study the evolution of stars on the thermally pulsing asymptotic giant branch (TP-AGB). These constraints derive from newly discovered (bright) white dwarfs in the nearby Hyades and Praesepe star clusters, including a total of 18 high signal-to-noise ratio measurements with progenitor masses of M {sub initial} = 2.8-3.8 M {sub ☉}. We also include a new analysis of existing white dwarfs in the older NGC 6819 and NGC 7789 star clusters, M {sub initial} = 1.6 and 2.0 M {sub ☉}. Over this range of initial masses, stellar evolutionary models for metallicity Z {sub initial} = 0.02 predict the maximum growth of the core of TP-AGB stars. By comparing the newly measured remnant masses to the robust prediction of the core mass at the first thermal pulse on the AGB (i.e., from stellar interior models), we establish several findings. First, we show that the stellar core mass on the AGB grows rapidly from 10% to 30% for stars with M {sub initial} = 1.6 to 2.0 M {sub ☉}. At larger masses, the core-mass growth decreases steadily to ∼10% at M {sub initial} = 3.4 M {sub ☉}, after which there is a small hint of a upturn out to M {sub initial} = 3.8 M {sub ☉}. These observations are in excellent agreement with predictions from the latest TP-AGB evolutionary models in Marigo et al. We also compare to models with varying efficiencies of the third dredge-up and mass loss, and demonstrate that the process governing the growth of the core is largely the stellar wind, while the third dredge-up plays a secondary, but non-negligible role. Based on the new white dwarf measurements, we perform an exploratory calibration of the most popular mass-loss prescriptions in the literature, as well as of the third dredge-up efficiency as a function of the stellar mass. Finally, we estimate the lifetime and the integrated luminosity of stars on the TP-AGB to peak at t ∼ 3 Myr and E = 1.2 × 10{sup 10} L {sub ☉} yr for M {sub initial} ∼ 2 M {sub ☉} (t ∼ 2 Myr for luminosities brighter than the red giant branch tip at log (L/L {sub ☉}) > 3.4), decreasing to t = 0.4 Myr and E = 6.1 × 10{sup 9} L {sub ☉} yr for stars with M {sub initial} ∼ 3.5 M {sub ☉}. The implications of these results are discussed, especially with respect to general studies aimed at characterizing the integrated light output of TP-AGB stars in population synthesis models.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

UNVEILING THE NATURE OF UNIDENTIFIED GAMMA-RAY SOURCES. I. A NEW METHOD FOR THE ASSOCIATION OF GAMMA-RAY BLAZARS

We present a new method for identifying blazar candidates by examining the locus, i.e., the region occupied by the Fermi {gamma}-ray blazars in the three-dimensional color space defined by the WISE infrared colors. This method is a refinement of our previous approach that made use of the two-dimensional projection of the distribution of WISE {gamma}-ray-emitting blazars (the Strip) in the three WISE color-color planes. In this paper, we define the three-dimensional locus by means of a principal component analysis of the color distribution of a large sample of blazars composed of all the ROMA-BZCAT sources with counterparts in the WISE All-Sky Catalog associated with {gamma}-ray sources in the second Fermi-LAT catalog (2FGL; the WISE Fermi blazars sample, WFB). Our new procedure yields a total completeness of c {sub tot} {approx} 81% and a total efficiency of e {sub tot} {approx} 97%. We also obtain local estimates of the efficiency and completeness as functions of the WISE colors and galactic coordinates of the candidate blazars. The catalog of all WISE candidate blazars associated with the WFB sample is also presented, complemented by archival multi-frequency information for the alternative associations. Finally, we apply the new association procedure to all {gamma}-ray blazars in the 2FGL and provide a catalog containing all the {gamma}-ray candidate blazars selected according to our procedure.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

Counts of galaxy clusters as cosmological probes: the impact of baryonic physics

The halo mass function from N-body simulations of collisionless matter is generally used to retrieve cosmological parameters from observed counts of galaxy clusters. This neglects the observational fact that the baryonic mass fraction in clusters is a random variable that, on average, increases with the total mass (within an overdensity of 500). Considering a mock catalog that includes tens of thousands of galaxy clusters, as expected from the forthcoming generation of surveys, we show that the effect of a varying baryonic mass fraction will be observable with high statistical significance. The net effect is a change in the overall normalization of the cluster mass function and a milder modification of its shape. Our results indicate the necessity of taking into account baryonic corrections to the mass function if one wants to obtain unbiased estimates of the cosmological parameters from data of this quality. We introduce the formalism necessary to accomplish this goal. Our discussion is based on the conditional probability of finding a given value of the baryonic mass fraction for clusters of fixed total mass. Finally, we show that combining information from the cluster counts with measurements of the baryonic mass fraction in a small subsample of clusters (including only a few tens of objects) will nearly optimally constrain the cosmological parameters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

A possible mass distribution of primordial black holes implied by LIGO-Virgo

The LIGO-Virgo Collaboration has so far detected around 90 black holes, some of which have masses larger than what were expected from the collapse of stars. The mass distribution of LIGO-Virgo black holes appears to have a peak at ~ 30 M ⊙ and two tails on the ends. By assuming that they all have a primordial origin, we analyze the GWTC-1 (O1&O2) and GWTC-2 (O3a) datasets by performing maximum likelihood estimation on a broken power law mass function f ( m ), with the result f ∝ m 1.2 for m < 35 M ⊙ and f ∝ m -4 for m > 35 M ⊙ . This appears to behave better than the popular log-normal mass function. Surprisingly, such a simple and unique distribution can be realized in our previously proposed mechanism of PBH formation, where the black holes are formed by vacuum bubbles that nucleate during inflation via quantum tunneling. Moreover, this mass distribution can also provide an explanation to supermassive black holes formed at high redshifts.

Astronomy & Astrophysics↗
DOE OSTI2022

The Sensitivity of GPz Estimates of Photo-z Posterior PDFs to Realistically Complex Training Set Imperfections

The accurate estimation of photometric redshifts is crucial to many upcoming galaxy surveys, for example, the Vera C. Rubin Observatory Legacy Survey of Space and Time (LSST). Almost all Rubin extragalactic and cosmological science requires accurate and precise calculation of photometric redshifts; many diverse approaches to this problem are currently in the process of being developed, validated, and tested. In this work, we use the photometric redshift code GPz to examine two realistically complex training set imperfections scenarios for machine learning based photometric redshift calculation: (i) where the spectroscopic training set has a very different distribution in color–magnitude space to the test set, and (ii) where the effect of emission line confusion causes a fraction of the training spectroscopic sample to not have the true redshift. By evaluating the sensitivity of GPz to a range of increasingly severe imperfections, with a range of metrics (both of photo-z point estimates as well as posterior probability distribution functions, PDFs), we quantify the degree to which predictions get worse with higher degrees of degradation. In particular, we find that there is a substantial drop-off in photo-z quality when line-confusion goes above ~1%, and sample incompleteness below a redshift of 1.5, for an experimental setup using data from the Buzzard Flock synthetic sky catalogs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Blinding multiprobe cosmological experiments

ABSTRACT The goal of blinding is to hide an experiment’s critical results – here the inferred cosmological parameters – until all decisions affecting its analysis have been finalized. This is especially important in the current era of precision cosmology, when the results of any new experiment are closely scrutinized for consistency or tension with previous results. In analyses that combine multiple observational probes, like the combination of galaxy clustering and weak lensing in the Dark Energy Survey (DES), it is challenging to blind the results while retaining the ability to check for (in)consistency between different parts of the data. We propose a simple new blinding transformation, which works by modifying the summary statistics that are input to parameter estimation, such as two-point correlation functions. The transformation shifts the measured statistics to new values that are consistent with (blindly) shifted cosmological parameters while preserving internal (in)consistency. We apply the blinding transformation to simulated data for the projected DES Year 3 galaxy clustering and weak lensing analysis, demonstrating that practical blinding is achieved without significant perturbation of internal-consistency checks, as measured here by degradation of the χ2 between the data and best-fitting model. Our blinding method’s performance is expected to improve as experiments evolve to higher precision and accuracy.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Core formation in high-z massive haloes: heating by post-compaction satellites and response to AGN outflows

ABSTRACT Observed rotation curves in star-forming galaxies indicate a puzzling dearth of dark matter in extended flat cores within haloes of mass ≥1012M⊙ at z ∼ 2. This is not reproduced by current cosmological simulations, and supernova-driven outflows are not effective in such massive haloes. We address a hybrid scenario where post-compaction merging satellites heat up the dark-matter cusps by dynamical friction, allowing active galactic nucleus (AGN)-driven outflows to generate cores. Using analytic and semi-analytic models (SatGen), we estimate the dynamical friction heating as a function of satellite compactness for a cosmological sequence of mergers. Cosmological simulations (VELA) demonstrate that satellites of initial virial masses >1011.3M⊙, which undergo wet compactions, become sufficiently compact for significant heating. Constituting a major fraction of the accretion on to haloes ≥1012M⊙, these satellites heat up the cusps in half a virial time at z ∼ 2. Using a model for outflow-driven core formation (CuspCore), we demonstrate that the heated dark-matter cusps develop extended cores in response to removal of half the gas mass, while the more compact stellar systems remain intact. The mergers keep the dark matter hot, while the gas supply, fresh and recycled, is sufficient for the AGN outflows. AGNs indeed become effective in haloes ≥1012M⊙, where the black hole growth is no longer suppressed by supernovae and its compaction-driven rapid growth is maintained by a hot circumgalactic medium. For simulations to reproduce the dynamical friction effects, they should resolve the compaction of the massive satellites and avoid artificial tidal disruption. AGN feedback could be boosted by clumpy black hole accretion and clumpy response to AGN.

Dekel, Avishai↗
DOE OSTI2022

Accretion disc sizes from continuum reverberation mapping of AGN selected from the ZTF survey

ABSTRACT We present the accretion disc-size estimates for a sample of 19 active galactic nuclei (AGNs) using the optical g-, r-, and i-band light curves obtained from the Zwicky Transient Facility survey. All the AGNs have reliable supermassive black hole (SMBH) mass estimates based on previous reverberation mapping measurements. The multiband light curves are cross-correlated, and the reverberation lag is estimated using the Interpolated Cross-Correlation Function method and the Bayesian method using the javelin code. As expected from the disc-reprocessing arguments, the g − r band lags are shorter than the g − i band lags for this sample. The interband lags for all, but five sources, are larger than the sizes predicted from the standard Shakura Sunyaev (SS) analytical model. We fit the light curves directly using a thin disc model implemented through the javelin code to get the accretion disc sizes. The disc sizes obtained using this model are on an average 3.9 times larger than the prediction based on the SS disc model. We find a weak correlation between the disc sizes and the known physical parameters, namely the luminosity and the SMBH mass. In the near future, a large sample of AGNs covering broader ranges of luminosity and SMBH mass from large photometric surveys would be helpful in a better understanding of the structure and physics of the accretion disc.

Jha, Vivek Kumar (ORCID:0000000232776335)↗
DOE OSTI2022

Nothing to see here: failed supernovae are faint or rare

ABSTRACT The absence of Type IIP core-collapse supernovae arising from progenitors above 17 solar masses suggests the existence of another evolutionary path by which massive stars end their lives. The direct collapse of a stellar core to a black hole without the production of a bright, explosive transient is expected to produce a long-lived, dim, red transient known as a failed supernova. Despite the detection of a number of candidates for disappearing massive stars in recent years, conclusive observational evidence for failed supernovae remains elusive. A custom-built pipeline designed for the detection of faint transients is used to re-analyse 10 yr of observations of 231 nearby galaxies from the PTF/ZTF surveys. This analysis recovers known supernovae, and yields a number of interesting transients. However, none of these are consistent with a failed supernova. Through Monte Carlo tests the recovery efficiency of our pipeline is quantified. By assuming failed supernovae occur as a Poissonian process with zero detections in the data set, 95 per cent upper limits to the rate of failed supernovae are calculated as a function of failed supernova absolute magnitude. We estimate failed supernovae to be less than 0.61, 0.33, 0.26, or 0.23 of the core-collapse SN rate for absolute magnitudes of −11, −12, −13, and −14, respectively. Finally, we show that if they exist, the Vera C. Rubin Observatory will find 1.7–3.7 failed SNe per year for an absolute bolometric luminosity of ∼6 × 1039 erg s−1 out to distances of 33–43 Mpc, depending on their assumed spectral energy distribution.

Byrne, R. A. (ORCID:0000000177661737)↗
DOE OSTI2022

Dark energy survey year 3 results: cosmological constraints from the analysis of cosmic shear in harmonic space

ABSTRACT We present cosmological constraints from the analysis of angular power spectra of cosmic shear maps based on data from the first three years of observations by the Dark Energy Survey (DES Y3). Our measurements are based on the pseudo-Cℓ method and complement the analysis of the two-point correlation functions in real space, as the two estimators are known to compress and select Gaussian information in different ways, due to scale cuts. They may also be differently affected by systematic effects and theoretical uncertainties, making this analysis an important cross-check. Using the same fiducial Lambda cold dark matter model as in the DES Y3 real-space analysis, we find ${S_8 \equiv \sigma _8 \sqrt{\Omega _{\rm m}/0.3} = 0.793^{+0.038}_{-0.025}}$, which further improves to S8 = 0.784 ± 0.026 when including shear ratios. This result is within expected statistical fluctuations from the real-space constraint, and in agreement with DES Y3 analyses of non-Gaussian statistics, but favours a slightly higher value of S8, which reduces the tension with the Planck 2018 constraints from 2.3σ in the real space analysis to 1.5σ here. We explore less conservative intrinsic alignments models than the one adopted in our fiducial analysis, finding no clear preference for a more complex model. We also include small scales, using an increased Fourier mode cut-off up to $k_{\rm max}={5}\, {h}\, {\rm Mpc}^{-1}$, which allows to constrain baryonic feedback while leaving cosmological constraints essentially unchanged. Finally, we present an approximate reconstruction of the linear matter power spectrum at present time, found to be about 20 per cent lower than predicted by Planck 2018, as reflected by the lower S8 value.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

The broad-band properties of the intermediate synchrotron peaked BL Lac S2 0109+22 from radio to VHE gamma-rays

Here, the Major Atmospheric Gamma-ray Imaging Cherenkov (MAGIC) telescopes observed S2 0109+22 in 2015 July during its flaring activity in high-energy gamma-rays observed by Fermi -Large Area Telescope. We analyse the MAGIC data to characterize the very high energy (VHE) gamma-ray emission of S2 0109+22, which belongs to the subclass of intermediate synchrotron peak (ISP) BL Lacertae (BL Lac) objects. We study the multifrequency emission in order to investigate the source classification. Finally, we compare the source long-term behaviour to other VHE gamma-ray emitting (TeV) blazars. We performed a temporal and spectral analysis of the data centred around the MAGIC interval of observation (MJD 57225–57231). Long-term radio and optical data have also been investigated using the discrete correlation function. The redshift of the source is estimated through optical host-galaxy imaging and also using the amount of VHE gamma-ray absorption. The quasi-simultaneous multifrequency spectral energy distribution (SED) is modelled with the conventional one-zone synchrotron self-Compton (SSC) model. MAGIC observations resulted in the detection of the source at a significance level of 5.3σ. The VHE gamma-ray emission of S2 0109+22 is variable on a daily time scale. VHE gamma-ray luminosity of the source is lower than the average of TeV BL Lacs. The optical polarization and long-term optical/radio behaviour of the source are different from the general population of TeV blazars. All these findings agree with the classification of the source as an ISP BL Lac object. As a result, we estimate the source redshift as z = 0.36 ± 0.07. The SSC parameters describing the SED are rather typical for blazars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

The power spectrum of the Lyman-α Forest at z < 0.5

ABSTRACT We present new measurements of the flux power-spectrum P(k) of the z < 0.5 H i Lyman-α Forest spanning scales $k \sim 0.001\!-\!0.1\, \mathrm{s \, km}^{-1}$. These results were derived from 65 far-ultraviolet quasar spectra (resolution $R \sim 18\, 000$) observed with the Cosmic Origin Spectrograph (COS) on board the Hubble Space Telescope. The analysis required careful masking of all contaminating, coincident absorption from H i and metal–line transitions of the Galactic interstellar medium and intervening absorbers as well as proper treatment of the complex COS line-spread function. From the P(k) measurements, we estimate the H i photoionization rate ($\Gamma _{\rm H\,{\small I}}$) in the z < 0.5 intergalactic medium. Our results confirm most of the previous $\Gamma _{\rm H\,{\small I}}$ estimates. We conclude that previous concerns of a photon underproduction crisis are now resolved by demonstrating that the measured $\Gamma _{\rm H\,{\small I}}$ can be accounted for by ultraviolet emission from quasars alone. In a companion paper, we will present constraints on the thermal state of the z < 0.5 intergalactic medium from the P(k) measurements presented here.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2013

Measurement and modeling of intrinsic transcription terminators

The reliable forward engineering of genetic systems remains limited by the ad hoc reuse of many types of basic genetic elements. Although a few intrinsic prokaryotic transcription terminators are used routinely, termination efficiencies have not been studied systematically. Here, we developed and validated a genetic architecture that enables reliable measurement of termination efficiencies. We then assembled a collection of 61 natural and synthetic terminators that collectively encode termination efficiencies across an 800-fold dynamic range within Escherichia coli. We simulated co-transcriptional RNA folding dynamics to identify competing secondary structures that might interfere with terminator folding kinetics or impact termination activity. We found that structures extending beyond the core terminator stem are likely to increase terminator activity. By excluding terminators encoding such context-confounding elements, we were able to develop a linear sequence-function model that can be used to estimate termination efficiencies (r = 0.9, n = 31) better than models trained on all terminators (r = 0.67, n = 54). The resulting systematically measured collection of terminators should improve the engineering of synthetic genetic systems and also advance quantitative modeling of transcription termination.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗