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At least 1,045 records · Page 58

Rich Dynamics of a General Producer–Grazer Interaction Model under Shared Multiple Resource Limitations

Organism growth is often determined by multiple resources interdependently. However, growth models based on the Droop cell quota framework have historically been built using threshold formulations, which means they intrinsically involve single-resource limitations. In addition, it is a daunting task to study the global dynamics of these models mathematically, since they employ minimum functions that are non-smooth (not differentiable). To provide an approach to encompass interactions of multiple resources, we propose a multiple-resource limitation growth function based on the Droop cell quota concept and incorporate it into an existing producer–grazer model. The formulation of the producer’s growth rate is based on cell growth process time-tracking, while the grazer’s growth rate is constructed based on optimal limiting nutrient allocation in cell transcription and translation phases. We show that the proposed model captures a wide range of experimental observations, such as the paradox of enrichment, the paradox of energy enrichment, and the paradox of nutrient enrichment. Together, our proposed formulation and the existing threshold formulation provide bounds on the expected growth of an organism. Moreover, the proposed model is mathematically more tractable, since it does not use the minimum functions as in other stoichiometric models.

59 BASIC BIOLOGICAL SCIENCES↗

Implementation of Monte Carlo Transport in the General Relativistic SpEC Code

Neutrino transport and neutrino-matter interactions are known to play an important role in the evolution of neutron star mergers and of their post-merger remnants. Neutrinos cool remnants, drive post-merger winds, and deposit energy in the low-density polar regions where relativistic jets may eventually form. Neutrinos also modify the composition of the ejected material, impacting the outcome of nucleosynthesis in merger outflows and the properties of the optical/infrared transients that they power (kilonovae). So far, merger simulations have largely relied on approximate treatments of the neutrinos (leakage, moments) that simplify the equations of radiation transport in a way that makes simulations more affordable but also introduces unquantifiable errors in the results. To improve on these methods, we recently published a first simulation of neutron star mergers using a low-cost Monte Carlo algorithm for neutrino radiation transport. Our transport code limits costs in optically thick regions by placing a hard ceiling on the value of the absorption opacity of the fluid, yet all approximations made within the code are designed to vanish in the limit of infinite numerical resolution. We provide here an in-depth description of this algorithm, of its implementation in the SpEC merger code, and of the expected impact of our approximations in optically thick regions. We argue that the last is a subdominant source of error at the accuracy reached by current simulations and for the interactions currently included in our code. We also provide tests of the most important features of this code.

79 ASTRONOMY AND ASTROPHYSICS↗

The Velocity Map Asymmetry of Ionized Gas in MaNGA. I. The Catalog and General Properties

The SDSS-IV MaNGA survey has measured two-dimensional maps of emission-line velocities for a statistically powerful sample of nearby galaxies. The asymmetric features of these kinematics maps reflect the nonrotational component of a galaxy’s internal motion of ionized gas. In this study, we present a catalog of kinematic asymmetry measurements of the H α velocity map of a sample of 5353 MaNGA galaxies. Based on this catalog, we find that “special” galaxies (e.g., merging galaxies, barred galaxies, and active galactic nucleus host galaxies) contain more galaxies with highly asymmetric velocity maps. However, we notice that more than half of galaxies with high kinematic asymmetry in our sample are quite “regular.” For those “regular” galaxies, kinematic asymmetry shows a significant anticorrelation with stellar mass at log M * < 9.7 , while such a trend becomes very weak at log M * > 9.7 . Moreover, at a given stellar mass, the kinematic asymmetry shows weak correlations with photometric morphology, star formation rate, and environment, while it is independent of H i gas content. We also have quantified the observational effects in the kinematic asymmetry measurement. We find that both the signal-to-noise ratio of H α flux and disk inclination angle contribute to the measures of kinematic asymmetry, while the physical spatial resolution is an irrelevant factor inside the MaNGA redshift coverage.

79 ASTRONOMY AND ASTROPHYSICS↗

A General Method for Estimating Zonal Transmission Interface Limits from Nodal Network Data: Preprint

Capacity expansion models for the electric power system often employ zonal (rather than nodal) resolution, necessitating estimates of aggregate power transfer limits across the interfaces between model zones. Interface limits between planning areas are sometimes published, but they are not generalizable to arbitrary zone shapes. There is thus a need for a reproducible method for estimating interface transfer limits (ITLs) between user-defined zones directly from nodal transmission system data. Here, we present a simple method for estimating ITLs using a DC power flow approximation via the power transfer distribution factor (PTDF) matrix. Linear optimization is performed to identify the distribution of power flows that maximizes the total flow on interface-crossing lines, subject to individual line ratings, limits on bus injection/withdrawal, and the relationships among flows, injections, and withdrawals imposed by the PTDF matrix. We demonstrate the application of the method on a 134-zone ~65000-bus system, and we explore the influence of flow direction, contingency level, and zone size on the estimated ITLs. There is significant heterogeneity in the ratio of the ITL to the sum of interface-crossing line ratings, which highlights the importance of accounting for the physical constraints on power flows imposed by Kirchhoff's laws when estimating zonal ITLs.

17 WIND ENERGY↗

HSW-V v1.0: localized injections of interactive volcanic aerosols and their climate impacts in a simple general circulation model

Abstract. A new set of standalone parameterizations is presented for simulating the injection, evolution, and radiative forcing by stratospheric volcanic aerosols against an idealized Held–Suarez–Williamson (HSW) atmospheric background in the Energy Exascale Earth System Model version 2 (E3SMv2). In this model configuration (HSW with enabled volcanism, HSW-V), sulfur dioxide (SO2) and ash are injected into the atmosphere with a specified profile in the vertical, and they proceed to follow a simple exponential decay. The SO2 decay is modeled as a perfect conversion to a long-living sulfate aerosol which persists in the stratosphere. All three species are implemented as tracers in the model framework and are transported by the dynamical core's advection algorithm. The aerosols contribute simultaneously to local heating of the stratosphere and cooling of the surface by a simple plane-parallel Beer–Lambert law applied on two zonally symmetric radiation broadbands in the longwave and shortwave ranges. It is shown that the implementation parameters can be tuned to produce realistic temperature anomaly signatures of large volcanic events. In particular, results are shown for an ensemble of runs that mimic the volcanic eruption of Mt. Pinatubo in 1991. The design requires no coupling to microphysical subgrid-scale parameterizations and thus approaches the computational affordability of prescribed aerosol forcing strategies. The idealized simulations contain a single isolated volcanic event against a statistically uniform climate, where no background aerosols or other sources of externally forced variability are present. HSW-V represents a simpler-to-understand tool for the development of climate source-to-impact attribution methods.

Hollowed, Joseph P. (ORCID:0000000286581672)↗

A Generalized approach to the operationalization of Software Quality Models

Comprehensive measures of quality are a research imperative, yet the development of software quality models is a wicked problem. Definitive solutions do not exist and quality is subjective at its most abstract. Definitional measures of quality are contingent on a domain, and even within a domain, the choice of representative characteristics to decompose quality is subjective. Thus, the operationalization of quality models brings even more challenges. A promising approach to quality modeling is the use of hierarchies to represent characteristics, where lower levels of the hierarchy represent concepts closer to real-world observations. Building upon prior hierarchical modeling approaches, we developed the Platform for Investigative software Quality Understanding and Evaluation (PIQUE). PIQUE surmounts several quality modeling challenges because it allows modelers to instantiate abstract hierarchical models in any domain by leveraging organizational tools tailored to their specific contexts. Here, we introduce PIQUE; exemplify its utility with two practical use cases; address challenges associated with parameterizing a PIQUE model; and describe algorithmic techniques that tackle normalization, aggregation, and interpolation of measurements.

Data aggregation↗

Hybrid deep learning architecture for general disruption prediction across tokamaks

In this paper, we present a new deep learning disruption prediction algorithm based on important findings from explorative data analysis which effectively allows knowledge transfer from existing devices to new ones, thereby predicting disruptions using very limited disruptive data from the new devices. The explorative data analysis conducted via unsupervised clustering techniques confirms that time-sequence data are much better separators of disruptive and non-disruptive behavior than the instantaneous plasma state data with further advantageous implications for a sequence-based predictor. Based on such important findings, we have designed a new algorithm for multi-machine disruption prediction that achieves high predictive accuracy on the C-Mod (AUC=0.801), DIII-D (AUC=0.947) and EAST (AUC=0.973). tokamaks with limited hyperparameter tuning. Through numerical experiments, we show that boosted accuracy (AUC=0.959) is achieved on EAST predictions by including in the training only 20 disruptive discharges, thousands of non-disruptive discharges from EAST, and combining this with more than a thousand discharges from DIII-D and C-Mod. The improvement of predictive ability obtained by combining disruptive data from other devices is found to be true for all permutations of the three devices. Furthermore, by comparing the predictive performance of each individual numerical experiment, we find that non-disruptive data are machine-specific while disruptive data from multiple devices contain device-independent knowledge that can be used to inform predictions for disruptions occurring on a new device.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗