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At least 1,045 records · Page 58
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Nicotinamide Cofactor Biomimetics: Design and Structure Activity Relationships

Biocatalysis is an attractive methodology due to its sustainable metrics, combined with its vaunted regio-, chemo-, and stereoselectivity. Among biocatalysts, oxidoreductases catalyze redox transformations on a wide variety of substrates and are thus particularly attractive for synthetic applications. Many oxidoreductases depend on nicotinamide-based cofactors; however, the high cost and poor atom economy of such cofactors can negate the advantage of biosynthetic processes. The native cofactors (i.e., NADH or NADPH) can be replaced by nicotinamide cofactor biomimetics (NCBs) to address these issues. Additionally, NCBs can enhance enzyme activity due to structures with expanded redox properties. These capabilities open possibilities for reactivity and biorthogonality. Thus, the field has responded with new NCB structures, including variation in their electronic and molecular recognition properties. This perspective focuses on structure-activity relationships of simple NCBs, including their function, stability, and other properties, along with methods for their regeneration in biosynthesis.

agricultural chemistry↗
DOE OSTI2022

The Impacts of Single-Scattering and Microphysical Properties of Ice Particles Smaller Than 100 µm on the Bulk Radiative Properties of Tropical Cirrus

There are large uncertainties in the single-scattering (i.e., morphologies) and microphysical (i.e., concentrations) properties of ice particles whose size are less than ~100 µm. Insufficient resolutions of the most advanced cloud probes (e.g., cloud particle imager) cannot resolve the micrometer-scale morphologies of small ice particles. Further, the shattering of large ice particles on probes’ inlets or tips causes uncertainties in the measurement of the concentrations of small ice particles. These uncertainties have large impacts on the single-scattering and microphysical properties of small ice particles that are utilized to quantify the bulk radiative properties of cirrus. In this study, the impacts of uncertainties in the morphologies and concentrations of small ice particles on the bulk radiative properties of tropical cirrus were calculated using measurements acquired during the Tropical Warm Pool-International Cloud Experiment. Five different models (i.e., budding Buckyball, Chebyshev particle, droxtal, Gaussian random sphere, and sphere) that represent the shapes of small ice particles were used to calculate the single-scattering properties. The bulk radiative properties, average phase-function ($\overline{P_{11}}$), and average asymmetry parameter ($\overline{g}$) were computed by combining the measured size/habit distributions and the calculated single-scattering properties of ice particles. The impacts of the selection of varying morphologies of small particles on the bulk radiative properties were quantified. For these calculations, the possible range of the concentrations of small ice particles which depend on the degree of shattered large particles were also used. The impacts of varying the single-scattering properties of small ice particles on the bulk radiative properties were the largest in the upper parts of cirrus (T < –60 °C), while they were the smallest in the lower parts of cirrus (–45 < T < –30 °C). The impacts of uncertainties in the concentrations of small ice particles on the bulk radiative properties were largest in the lower parts of cirrus (–45 < T < –30 °C), whereas they were smallest in the upper parts of cirrus (T < –60 °C). The effect of shattering was maximum in the lower parts of cirrus, whilst it was minimum in the upper parts of cirrus. The combined impacts of uncertainties in the single-scattering (i.e., morphologies) and microphysical (i.e., concentrations) properties of small ice particles revealed variations of up to 11.2% (127.1%; 67.3%) of the integrated intensity in the forward (sideward; backward) angles in $\overline{P_{11}}$ and a corresponding change in $\overline{g}$ by up to 12.61%.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1972

The inverse problem of the optimal regulator.

The inverse problem of the optimal regulator is considered for a general class of multi-input systems with integral-type performance indices. A new phase variable canonical form is shown to be convenient for this analysis. The advantage of the canonical form is to separate the state variables into subvectors of directly controlled, indirectly controlled, and uncontrollable components. Necessary and sufficient conditions for optimized performance indices are given. With the nonlinearities of the system restricted to functions of the directly controlled state variables, additional results are developed about the nonnegative property of optimized loss functions.

Yokoyama, R.↗
DOE OSTI2022

From ground to excited electronic state dynamics of electron and ion irradiated graphene nanomaterials

Microscopes utilizing convergent electron and ion beams are emerging as powerful tools for both imaging and manipulating two-dimensional materials with atomic resolution, allowing the ultimate limits of nanofabrication to be realized. In this chapter, we detail the use of time-dependent electronic structure theory to determine the excited state properties and reactivity of functionalized graphene nanostructures. A time-dependent density functional theory treatment of electronic excitations of materials is presented, with specific emphasis on predicting the position-dependent electronic response of two-dimensional nanomaterials to electron beams. The method is demonstrated in a study highlighting the important role that electronic excitation can play in opening reaction pathways relevant to atomically precise defect manipulation in graphene. Finally, we provide some perspective on future development directions for methods of simulating nonequilibrium electronic and vibrational dynamics induced by electron/ion beams.

Lingerfelt, David↗
DOE OSTI2021

Phase Equilibrium of Water with Hexagonal and Cubic Ice Using the SCAN Functional

Machine learning models are rapidly becoming widely used to simulate complex physicochemical phenomena with ab initio accuracy. Here, we use one such model as well as direct density functional theory (DFT) calculations to investigate the phase equilibrium of water, hexagonal ice (Ih), and cubic ice (Ic), with an eye toward studying ice nucleation. The machine learning model is based on deep neural networks and has been trained on DFT data obtained using the SCAN exchange and correlation functional. We use this model to drive enhanced sampling simulations aimed at calculating a number of complex properties that are out of reach of DFT-driven simulations and then employ an appropriate reweighting procedure to compute the corresponding properties for the SCAN functional. This approach allows us to calculate the melting temperature of both ice polymorphs, the driving force for nucleation, the heat of fusion, the densities at the melting temperature, the relative stability of ices Ih and Ic, and other properties. We find a correct qualitative prediction of all properties of interest. In some cases, quantitative agreement with experiment is better than for state-of-the-art semiempirical potentials for water. Furthermore, our results also show that SCAN correctly predicts that ice Ih is more stable than ice Ic.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRSDate not supplied

A Generalized, Compactly-Supported Correlation Function for Data Assimilation Applications

Correlation functions play an essential role in modern data assimilation, where they are used to model covariances given a set of tunable parameters or applied as tapering functions to localize covariances in ensemble-based schemes. One of the most widely-used correlation functions in data assimilation is the Gaspari and Cohn (1999) piecewise-rational, compactly-supported parametric correlation function (hereafter referred to as GC99). The GC99 correlation function is useful due to its tunable cut-off parameter c and Gaussian-like shape achieved when the parameter a is set to one-half. These properties are attractive for tapering functions in data assimilation applications. However, the GC99 correlation function is homogeneous over Euclidean 3-space and isotropic when restricted to the sphere, properties that may be less than ideal for some geophysical applications. GC99 is also compactly-supported on a sphere of fixed radius, which requires tuning of the cut-off parameter c that can depend on the specific application. This work presents a generalization of the GC99 correlation function that allows the cut-off parameter c and shape parameter a to vary over space to gain more flexibility in shape while maintaining its compact support property. The function, which we call the Generalized Gaspari Cohn (GenGC) correlation function, introduces inhomogeneity in Euclidean 3-space and anisotropy when restricted to the sphere by allowing both parameters c and a to vary, as functions, over the spatial domain. The GC99 correlation function is a special case of GenGC where the functions c and a are held constant, as fixed parameters rather than functions. The GenGC correlation function also generalizes the follow-on to the work of Gaspari and Cohn (1999) presented in Gaspari et al. (2006), which allowed a to vary while keeping c fixed. We illustrate through simple one- and two-dimensional examples the variety of inhomogeneous and anisotropic correlation functions GenGC can produce by varying c and a over space, and suggest applications where they may be useful in data assimilation, such as covariance modeling or localization. In particular, we describe how the GenGC correlation function can be used to construct covariances using correlation length and variance fields derived from dynamics. For example, the correlation length field for advective dynamics is governed by a partial differential equation (PDE) in N spatial dimensions, where N is the number of space dimensions of the state. Correlation length fields can be determined from this PDE and used with GenGC to construct the corresponding correlations. We can then approximate the full covariance by rescaling by the variance, which also satisfies a PDE in N spatial dimensions for advective dynamics. Thus we can approximate the full covariance without solving the covariance PDE, which is in 2N spatial dimensions, by solving just two PDEs each in only N spatial dimensions. This approach to evolving the correlation length and variance fields, then reconstructing the correlations using GenGC, is suggested as an alternative to current methods of covariance modeling in data assimilation algorithms.

GC99↗
NASA NTRS1983

Analysis of a hybrid, uni-directional laminate with damage

The fracture behavior of hybrid (buffer strip) laminated composites is predicted by a novel method in terms of material properties, geometry, and internal damage. Attention is given to the cases of broken fibers in a unidirectional half-plane, adjoined half-planes having different fiber and matrix properties, and the solution of two half-planes bounding a third, distinct region of finite width. The analysis is based on a materials modeling approach using the classical shear-lag assumption to represent the stress transfer between fibers. Explicit fiber and matrix properties of the three regions are retained, and changes in the laminate behavior as a function of the material properties, buffer strip width and initial crack length are discussed.

Goree, J. G.↗
NASA NTRS2024

A Uniform Analysis of Debris Discs with the Gemini Planet Imager II: Constraints on Dust Density Distribution Using Empirically Informed Scattering Phase Functions

Spatially resolved images of debris discs are necessary to determine disc morphological properties and the scattering phase function (SPF) thatantifies the brightness of scattered light as a function of phase angle. Current high-contrast imaging instruments have successfully resolved several dozens of debris discs around other stars, but few studies have investigated trends in the scattered-light, resolved population of debris discs in a uniform and consistent manner. We have combined Karhunen-Loeve Image Projection (KLIP) with radiative-transfer disc forward modelling in order to obtain the highest-quality image reductions and constrain disc morphological properties of eight debris discs imaged by the Gemini Planet Imager at H -band with a consistent and uniformly applied approach. In describing the scattering properties of our models, we assume a common SPF informed from solar system dust scattering measurements and apply it to all systems. We identify a diverse range of dust density properties among the sample, including critical radius, radial width, and vertical width. We also identify radially narrow and vertically extended discs that may have resulted from substellar companion perturbations, along with a tentative positive trend in disc eccentricity with relative disc width. We also find that using a common SPF can achieve reasonable model fits for discs that are axisymmetric and asymmetric when fitting models to each side of the disc independently, suggesting that scattering behaviour from debris discs may be similar to Solar system dust.

scattering↗
DOE OSTI2020

Leveraging Sequential Doping of Semiconducting Polymers to Enable Functionally Graded Materials for Organic Thermoelectrics

With the ability to modulate electronic properties through molecular doping coupled with ease in processability, semiconducting polymers are at the forefront in enabling organic thermoelectric devices for thermal energy management. In contrast to uniform thermoelectric material properties, an alternative route focuses on functionally graded materials (FGMs) where one spatially controls and optimizes transport properties across the length of a thermoelectric material. While primarily studied in the context of inorganic materials, the concept of FGMs for organic thermoelectrics has not been explored. Herein, we introduce how molecular doping of semiconducting polymers enables spatial compositional control of thin-film FGMs. Specifically, we utilize sequential vapor doping of poly[2,5-bis(3-tetradecylthiophen-2-yl) thieno [3,2-b]thiophene] (PBTTT) with the small molecule acceptor 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane (F4TCNQ) to fabricate the simplest form of FGMs – double- segmented thin films. The two thin-film segments are of equal length (7.5 mm), but each set to different doping levels. Our study focuses on understanding the thermoelectric properties (Seebeck coefficient, α, and electronic conductivity, σ) and structural properties (through X-ray scattering, UV-vis-NIR spectroscopy, and Raman spectroscopy) within and across the two segments. We observe the presence of a small diffuse interfacial region of 0.5 – 1 mm between the two segments where the doping level and transport properties vary continuously. Despite the diffuse interface, the measured effective Seebeck coefficient (αeff) across the two segments is simply the average of α within each segment. Importantly, this experimental result is consistent with reported mathematical models describing αeff in graded thermoelectric materials. Finally, our results demonstrate the facile fabrication and characterization of functionally graded organic thermoelectric materials, providing guidelines for further development on more complex FGMs.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Synthesis and Photophysical Properties of Light-Harvesting Gold Nanoclusters Fully Functionalized with Antenna Chromophores

The development of efficient light-harvesting systems is important to understand the key aspects of solar-energy conversion processes and to utilize them in various photonic applications. In this study, atomically well-defined gold nanoclusters are reported as a new platform to fabricate artificial light-harvesting systems. An efficient amide coupling method is developed to synthesize water-soluble Au 22 clusters fully protected with pyrene chromophores by taking advantage of their facile phase-transfer reaction. The synthesized Au 22 clusters with densely packed 18 pyrene chromophores (Au 22 –PyB 18 ) exhibit triple-emission in blue, green, and red wavelength regions arising respectively from pyrene monomer, pyrene excimer, and Au 22 emission, producing bright white light emission together. The photoluminescence of Au 22 is enhanced by more than tenfold, demonstrating that pyrenes at the periphery efficiently channel the absorbed energy to the luminescent Au 22 at the center. A combination of femtosecond transient absorption and anisotropy measurements of Au 22 –PyB 18 explicitly reveals three main decay components of 220 fs, 3.5 ps, and 160 ps that can be assigned to energy migration between pyrenes and energy transfer processes from pyrene monomer and excimer to the central Au 22 , respectively.

14 SOLAR ENERGY↗
DOE OSTI2024

Improving Predictions of Spin-Crossover Complex Properties through DFT Calculations with a Local Hybrid Functional

We conducted a study on the performance of the local hybrid exchange-correlation functional PBE0r for a set of 95 experimentally-characterized iron spin crossover (SCO) complexes. The PBE0r functional is a variant of PBE0 where the exchange correction is restricted to on-site terms formulated within the basis of local orbitals. We determine the free parameters of the PBE0r functional against experimental data and other hybrid functionals. With a Hartree-Fock (HF) exchange factor of 4%, the PBE0r functional accurately reproduces the electronic and free energy trends predicted in prior DFT studies for these 95 complexes using the B3LYP functional. Larger values of HF exchange stabilize high-spin states. The PBE0r-predicted bond lengths tend to exceed the experimental bond lengths, and bond lengths are less sensitive to HF exchange. The predicted SCO transition temperatures T 1/2 from PBE0r correlate moderately with the experimental transition temperatures, showing a slight improvement compared to the previous modB3LYP-predicted T 1/2 . Furthermore, this study suggests the PBE0r functional as computationally cost-effective and offers the possibility of simulating larger complexes with accuracy comparable to other global hybrid functionals, provided the HF exchange parameter is carefully optimized.

25 ENERGY STORAGE↗
DOE OSTI2021

Bond order predictions using deep neural networks

Machine learning is an extremely powerful tool for the modern theoretical chemist since it provides a method for bypassing costly algorithms for solving the Schrödinger equation. Already, it has proven able to infer molecular and atomic properties such as charges, enthalpies, dipoles, excited state energies, and others. Most of these machine learning algorithms proceed by inferring properties of individual atoms, even breaking down total molecular energy into individual atomic contributions. In this paper, we introduce a modified version of the Hierarchically Interacting Particle Neural Network (HIP-NN) capable of making predictions on the bonds between atoms rather than on the atoms themselves. We train the modified HIP-NN to infer bond orders for a large number of small organic molecules as computed via the Natural Bond Orbital package. We demonstrate that the trained model is extensible to molecules much larger than those in the training set by studying its performance on the COMP6 dataset. This method has applications in cheminformatics and force field parameterization and opens a promising future for machine learning models to predict other quantities that are defined between atoms such as density matrix elements, Hamiltonian parameters, and molecular reactivities.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
NASA NTRS1987

Systematic properties of CO emission from galaxies. I - Luminosity function

A sensitive survey of normal galaxies covering a wide range of luminosities and morphological types is combined with galaxy observations in the literature to provide a sample for statistical study. The global CO emission of these galaxies is extrapolated by modeling the galaxies with an exponential radial profile. The maximum-likelihood distribution functions of CO luminosity and CO/H I flux ratio are similar in behavior. Both have long tails of bright galaxies. However, the typical galaxy has a CO luminosity of about 10 to the 6th Jy km/s Mpc-squared or less and a CO/H I ratio of the order of 10 or less. Averages of the distributions of CO luminosity and CO/H I flux ratio are higher for galaxies of Hubble type Sb-Sbc than for groups of earlier or later types. Quantitative estimates of the possible error sources in the conversion of CO luminosity to molecular mass indicates that the peaking of CO emission at intermediate types is a fairly confident result.

Verter, Frances↗