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At least 1,045 records · Page 58

A practical approach to using the Genomic Standards Consortium MIxS reporting standard for comparative genomics and metagenomics

Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimal Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate use of the GSC’s MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.

standards, metadata, genome, metagenome, schema, v↗

COMET: A Domain-Specific Compilation of High-Performance Computational Chemistry

The computational power increases over the past decades have greatly enhanced the ability to simulate chemical reactions and understand ever more complex transformations. Tensor contractions are the fundamental computational building block of these simulations. These simulations have often been tied to one platform and restricted in generality by the interface provided to the user. The expanding prevalence of accelerators and researcher demands necessitate a more general approach which is not tied to specific hardware or requires contortion of algorithms to specific hardware platforms. In this paper we present COMET, a domain-specific programming language and compiler infrastructure for tensor contractions targeting heterogeneous accelerators. We present a system of progressive lowering through multiple layers of abstraction and optimization that achieves up to 1.98×speedup for 30 tensor contractions commonly used in computational chemistry and beyond.

Mutlu, Erdal↗

Sparticle spectroscopy and dark matter in a U(1) B-L extension of MSSM

We consider a class of SUSY models in which the MSSM gauge group is supplemented with a gauged U(1) B-L symmetry and a global U(1) R symmetry. This extension introduces only electrically neutral states, and the new SUSY partners effectively double the number of states in the neutralino sector that now includes a blino (from B - L) and singlino from a gauge singlet superfield. If the DM density is saturated by a LSP neutralino, the model yields quite a rich phenomenology depending on the DM composition. The LSP relic density constraint provides a lower bound on the stop and gluino masses of about 3 TeV and 4 TeV respectively, which is testable in the near future collider experiments such as HL-LHC.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Partial spectral flow in the D1D5 CFT

The two-dimensional 𝒩 = 4 superconformal algebra has a free field realization with four bosons and four fermions. There is an automorphism of the algebra called spectral flow. Under spectral flow, the four fermions are transformed together. In this paper, we study partial spectral flow where only two of the four fermions are transformed. Partial spectral flow is applied to the D1D5 CFT where a marginal deformation moves the CFT away from the free point. The partial spectral flow is broken by the deformation. We show that this effect can be studied due to a transformation of the deformation which is well-defined under partial spectral flow. As a result in the spectrum, we demonstrate how to compute the second-order energy lift of a D1D5P state through its partial spectral flowed state. We find that D1D5P states related by partial spectral flow do not have the same lift in general.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Lifting of level-1 states in the D1D5 CFT

The D1D5 CFT has a large set of states that are supersymmetric at the ‘free’ orbifold point in moduli space. When we perturb away from this point, some of these states join into long multiplets and lift in energy, while others remain supersymmetric. The count of unlifted states can be bounded below by an index, but the index does not yield the pattern of lifting; i.e., which states join into a long multiplet and how much this multiplet lifts. In this paper we consider the simple case of the D1D5 CFT where the orbifold CFT is a sigma model with targets space (T 4 ) 2 /S 2 and consider states at energy level 1. There are 2688 states at this level. The lifted states form a triplet of long multiplets, and we compute their lift at second order in perturbation theory. Half the members of the long multiplet are in the untwisted sector and half are in the twisted sector. This and other similar studies should help in the understanding of fuzzball states that describe extremal holes, since CFT sectors with low twist describe shallow throats in the dual gravity solution while sectors with high twist describe deep throats.

79 ASTRONOMY AND ASTROPHYSICS↗

Charged lepton flavor violation at the EIC

We present a comprehensive analysis of the potential sensitivity of the Electron-Ion Collider (EIC) to charged lepton flavor violation (CLFV) in the channel ep → τX, within the model-independent framework of the Standard Model Effective Field Theory (SMEFT). We compute the relevant cross sections to leading order in QCD and electroweak corrections and perform simulations of signal and SM background events in various τ decay channels, suggesting simple cuts to enhance the associated estimated efficiencies. To assess the discovery potential of the EIC in τ-e transitions, we study the sensitivity of other probes of this physics across a broad range of energy scales, from pp → eτX at the Large Hadron Collider to decays of B mesons and τ leptons, such as τ → eγ, τ → eℓ+ℓ–, and crucially the hadronic modes τ → eY with Yϵ {π, K, ππ, Kπ, …}. We find that electroweak dipole and four-fermion semi-leptonic operators involving light quarks are already strongly constrained by τ decays, while operators involving the c and b quarks present more promising discovery potential for the EIC. An analysis of three models of leptoquarks confirms the expectations based on the SMEFT results. We also identify future directions needed to maximize the reach of the EIC in CLFV searches: these include an optimization of the τ tagger in hadronic channels, an exploration of background suppression through tagging b and c jets in the final state, and a global fit by turning on all SMEFT couplings, which will likely reveal new discovery windows for the EIC.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Probing light quark Yukawa couplings through angularity distributions in Higgs boson decay

We propose to utilize angularity distributions in Higgs boson decay to probe light quark Yukawa couplings at e + e - colliders. Angularities $τ$ a are a class of 2-jet event shapes with variable and tunable sensitivity to the distribution of radiation in hadronic jets in the final state. Using soft-collinear effective theory (SCET), we present a prediction of angularity distributions from Higgs decaying to quark and gluon states at e + e - colliders to NNLL + $\mathcal{O}$(α s ) accuracy. Due to the different color structures in quark and gluon jets, the angularity distributions from H → $q\overline{q}$ and H → gg show different behaviors and can be used to constrain the light quark Yukawa couplings. We show that the upper limit of light quark Yukawa couplings could be probed to the level of ~ 15% of the bottom quark Yukawa coupling in the Standard Model in a conservative analysis window far away from nonperturbative effects and other uncertainties; the limit can be pushed to ≲ 7 – 9% with better control of the nonperturbative effects especially on gluon angularity distributions and/or with multiple angularities.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Tensionless strings on AdS 3 orbifolds

The bound state of one NS5 brane (wrapped on a T 4 ) and N NS1-branes has two dual descriptions: its low-energy dynamics is described by the symmetric orbifold of T 4 , while the near horizon geometry is captured by string theory on AdS 3 × S 3 × T 4 with one unit of NS flux. The latter theory is exactly solvable in the hybrid formalism, and this allows one to prove the equivalence of the two descriptions. In this paper we extend this duality to Z k orbifolds of this AdS 3 × S 3 background. In particular, we show that the corresponding worldsheet spectrum reproduces exactly the perturbative excitations on top of a certain non-perturbative state in the dual symmetric orbifold theory. Since the AdS/CFT duality map is exact for these models, we obtain an interesting picture of how the duality relates boundary and bulk descriptions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A freely falling graviton in the D1D5 CFT

We study a freely falling graviton propagating in AdS in the context of the D1D5 CFT, where we introduce an interaction by turning on a deformation operator. We start with one left and right moving boson in the CFT. After applying two deformation operators, the initial bosons split into three left moving and three right moving bosons. We compute the amplitude for various energies and extrapolate the result to the large energy region. At early times, the amplitude is linear in time. This corresponds to an infalling graviton becoming redshifted in AdS. At late times, the amplitude is periodic, which agrees with the fact that a freely falling graviton will not be thermalized.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Inscribing geodesic circles on the face of the superstratum

Abstract We use families of circular null geodesics as probes of a family of microstate geometries, known as (1,0, n) superstrata. These geometries carry a left-moving momentum wave and the behavior of some of the geodesic probes is very sensitive to this background wave. The left-moving geodesics behave like BPS particles and so can be placed in circular orbits anywhere in the geometry and actually “float” at fixed radius and angle in the three-dimensional “capped BTZ” geometry. The right-moving geodesics behave like non-BPS particles. We show that they provide a simple geometric characterization of the black-hole bound: when the momentum charge of the geometry is below this bound, such geodesics can be placed anywhere, but exceeding the bound, even by a small amount, means these geodesics are restricted to the deep interior of the geometry. We also show that for left-moving string probes, the tidal forces remain comparable with those of global AdS 3 . Nevertheless, for some of these probes, the “bumps” in the geometry induce an oscillatory mass term and we discuss how this can lead to chaotic scrambling of the state of the string.

Physics↗

The dual of a tidal force in the D1D5 CFT

It was demonstrated that a string probe falling radially within a superstratum geometry would experience tidal forces. These tidal forces were shown to excite the string by converting its kinetic energy into stringy excitations. Using the AdS/CFT correspondence we seek to understand this behavior from the perspective of the dual D1D5 CFT. To study this process we turn on an interaction of the theory which is described by a deformation operator. We start with an initial state which is dual to a graviton probe moving within the superstratum geometry. We then use two deformation operators to compute transition amplitudes between this state and a final state that corresponds to stringy excitations. We show that this amplitude grows as t 2 with t being the amount of time for which the deformation operators are turned on. We argue that this process in the CFT is suggestive of the tidal effects experienced by the probe propagating within the dual superstratum geometry.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Master integrals for two-loop QCD corrections to quark quasi PDFs

We compute the master integrals for the two-loop QCD corrections to quark quasi parton distribution functions (PDFs) in the large momentum effective theory (LaMET). With a proper canonical basis, we derive the analytical results for the three families of master integrals using the method of differential equations. The final expressions for the master integrals are given in terms of Goncharov polylogarithms. These results allow us to extract the two-loop short-distant matching coefficients between quark quasi and lightcone PDFs in LaMET, and are valuable to improve the determination of the nucleon PDFs from first principles in future.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Universal lifting in the D1-D5 CFT

We consider D1-D5-P states in the untwisted sector of the D1-D5 orbifold CFT where one copy of the seed CFT has been excited with a left-moving superconformal primary. Despite being BPS at the orbifold point, such states can ‘lift’ as the theory is deformed away from this point in moduli space. We compute this lifting at second order in the deformation parameter for arbitrary left-moving dimension h of this class of states. This result displays an interesting universality since the lifting does not depend on the details of the superconformal primary; it depends only on the dimension. In the large-dimension limit the lift scales as $\sqrt{h}$; it is observed that such scaling appears to be a universal property of the lift of D1-D5-P states.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Lifting at higher levels in the D1D 5 CFT

The D1D 5 P system has a large set of BPS states at its orbifold point. Perturbing away from this ‘free’ point leads to some states joining up into long supermultiplets and lifting, while other states remain BPS. We consider the simplest orbifold which exhibits this lift: that with N = 2 copies of the free c = 6 CFT. We write down the number of lifted and unlifted states implied by the index at all levels upto 6. We work to second order in the perturbation strength λ. For levels upto 4, we find the wavefunctions of the lifted states, their supermultiplet structure and the value of the lift. All states that are allowed to lift by the index are in fact lifted at order O(λ 2 ). We observe that the unlifted states in the untwisted sector have an antisymmetry between the copies in the right moving Ramond ground state sector, and extend this observation to find classes of states for arbitrary N that will remain unlifted to O(λ 2 )

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Probing effective field theory operators in the associated production of top quarks with a Z boson in multilepton final states at $\sqrt{s}$ = 13 TeV

A search for new top quark interactions is performed within the framework of an effective field theory using the associated production of either one or two top quarks with a Z boson in multilepton final states. The data sample corresponds to an integrated luminosity of 138 fb -1 of proton-proton collisions at √s = 13 TeV collected by the CMS experiment at the LHC. Five dimension-six operators modifying the electroweak interactions of the top quark are considered. Novel machine-learning techniques are used to enhance the sensitivity to effects arising from these operators. Distributions used for the signal extraction are parameterized in terms of Wilson coefficients describing the interaction strengths of the operators. All five Wilson coefficients are simultaneously fit to data and 95% confidence level intervals are computed. All results are consistent with the SM expectations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dynamical evolution in the D1D5 CFT

It is interesting to ask: how does the radial space direction emerge from the CFT in gauge-gravity duality? In this context we resolve a long-standing puzzle with the gravity duals of two classes of states in the D1D5 CFT. For each class the CFT states are in the untwisted sector, suggesting that the energy gap should be 1/R y where R y is the radius of the circle on which the D1D5 CFT is compactified. For one class of states, the gravity dual indeed has exactly this gap, while for the other class, the gravity dual has a very deep throat, leading to an energy gap much smaller than 1/R y . We resolve this puzzle by showing that for the latter class of states, perturbing the CFT off its free point leads to the formation of a band structure in the CFT. We also explain why such a band structure does not arise for the first class of states. Thus for the case where a deep throat emerges in the gravity description, the dynamics of falling down this throat is described in the CFT as a sequential ‘hopping’ between states all of which have the same energy at the free point; this hopping amplitude converts an integer spaced spectrum into a closely spaced band of energy levels.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A data-driven framework for permeability prediction of natural porous rocks via microstructural characterization and pore-scale simulation

Understanding the microstructure–property relationships of porous media is of great practical significance, based on which macroscopic physical properties can be directly derived from measurable microstructural informatics. However, establishing reliable microstructure–property mappings in an explicit manner is difficult, due to the intricacy, stochasticity, and heterogeneity of porous microstructures. In this paper, a data-driven computational framework is presented to investigate the inherent microstructure–permeability linkage for natural porous rocks, where multiple techniques are integrated together, including microscopy imaging, stochastic reconstruction, microstructural characterization, pore-scale simulation, feature selection, and data-driven modeling. A large number of 3D digital rocks with a wide porosity range are acquired from microscopy imaging and stochastic reconstruction techniques. A broad variety of morphological descriptors are used to quantitatively characterize pore microstructures from different perspectives, and they compose the raw feature pool for feature selection. Here high-fidelity lattice Boltzmann simulations are conducted to resolve fluid flow passing through porous media, from which reliable permeability references are obtained. The optimal feature set that best represents permeability is identified through a performance-oriented feature selection process, upon which a cost-effective surrogate model is rapidly fitted to approximate the microstructure-permeability mapping via data-driven modeling. This surrogate model exhibits great advantages over empirical/analytical formulas in terms of prediction accuracy and generalization capacity, which can predict reliable permeability values spanning four orders of magnitude. Besides, feature selection also greatly enhances the interpretability of the data-driven prediction model, from which new insights into the mechanism of how microstructural characteristics determine intrinsic permeability are obtained.

58 GEOSCIENCES↗