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DOE OSTI2019

Study of Regional Climate Change Final Technical Report

Anthropogenic activity of fossil fuel and biomass burning emissions increase tropospheric aerosol concentrations causing a direct cooling effect by scattering solar radiation and thus increasing the Earth’s albedo. In addition, the aerosols can act as cloud condensation nuclei to regulate cloud droplet number and size, thereby changing both the cloud albedo, and the cloud lifetime and precipitation. Thus, the aerosol climate effect concerns intricate aerosol-cloud-radiation-precipitation interactions which are recognized to introduce the largest uncertainties in using GCMs to project future regional climate changes. The climate effects of aerosols are significant in the land regions of the Northern Hemisphere, in particular the sulfate aerosols over East Asia where significant anthropogenic SO 2 emissions have been observed and concentrations of other aerosol species are also high. The objective of the present project is to advance “modeling aerosol-cloud-climate interactions” in two areas: the aerosol-cloud microphysics interactions and model simulations of aerosol effects on regional climate with focus on East Asia. To achieve the objective, in addition to analyzing relevant observations, the project conducts and diagnoses regional and global climate model simulations. Specifically, two collaborative tasks were carried out: Task-1: Incorporating a physics-based, two-moments cloud scheme developed by J. P. Chen/National Taiwan University (NTU) into regional models (WRF and WRF-Chem) to study “aerosol-cloud microphysics interactions over eastern China and the southeast Pacific” ; for latter region, CMIP5 models exhibit distinct biases in (weaker) cloud radiative effects and (warmer) sea surface temperature. The task is conducted in collaboration with J.-P. Chen, H.-W. Xue/Peking University, and H. Liao/Institute of Atmospheric Physics; and Task-2: Diagnosis of NCAR-CESM and WRF model simulations of “aerosol climate effects” focusing on changes of circulation, precipitation and clouds over East Asia. The task is conducted in collaboration with J.-P. Chen, and I-Chun Tsai & H.-H. Hsu/Academia Sinica. For each task, several topical studies were carried out and documented in eleven (11) articles (five for Task-1 and six for Task-2), published in: J. Atmospheric Sciences (2); J. Climate (1); Climate Dynamics (3); J. Geophysical Research (2); Geophysical Research Letter (1); Int. J. Climatology (1); and Advances in Atmospheric Sciences (1). In addition, Wei-Chyung Wang (the PI) continues serving as the U. S. Chief Scientist for the joint agreement, “Climate Sciences”, between the U. S. DOE and China Ministry of Sciences and Technology (Riches et al., 2010). In this capacity, he works closely with Michael Riches/DOE (the U. S. Manager) to coordinate the scientific exchanges (visiting scientists) between the two countries. Educations (graduate students) and trainings (postdoctoral research associates) are key elements of the research project.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

New X-Ray Spectrometer Developed

X-ray absorption spectroscopy (XAS) and X-ray emission spectroscopy (XES) are useful tools for characterizing numerous properties of a given material. They can give elemental composition, metal oxidation states, spin state, orbital occupancy, and more. A drawback is that these types of measurements have historically needed synchrotron light sources to generate high flux X-ray beams and high-resolution monochromators to provide a monoenergetic excitation source. Synchrotrons are building-sized facilities (often operated in the U.S. by the DOE) and have the scheduling complexities and logistical issues that accompany any large-scale research facility. There are added challenges for scientists wishing to analyze radioactive samples such as plutonium or other actinides. These limitations are now mitigated by a small, “portable” X-ray emission and absorption spectrometers developed by Los Alamos scientists and the University of Washington.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2019

Study of Proton Stopping and Energy Deposition in Warm Dense Matter

This grant supported target fabrication and travel costs for Experiment LQ91 at the Matter in Extreme Conditions endstation (MEC) of the SLAC National Accelerator Laboratory’s Linac Coherent Light Source (LCLS). LQ91 was the first experiment to study proton-heated Warm Dense Matter (WDM) with the MEC end station. It was scheduled as the first experiment in MEC following maintenance and upgrades to the optical high intensity laser during LCLS Run 16. The team consisted of scientists, postdocs, and Ph.D. students from UC San Diego and Stanford University divided into two overlapping shifts. The team arrived onsite during the optical intense laser commissioning time to setup and stayed until the end of the experiment culminating in five shifts of awarded LCLS beam time. Postdoc Mathieu Bailly-Grandvaux led preparations in the months leading up to the experiment. During the experiment and in subsequent analysis work, two other UC San Diego postdocs and five UC San Diego graduate students were heavily involved. In this way, the project provided invaluable hands-on training opportunities in high energy-density science for several early-career scientists.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2019

Understanding and Constraining the Midlatitude Cloud Optical Depth Feedback in Climate Models (Final Report)

The objectives of this investigation are to provide a deeper understanding of the brightening of middle and high latitude clouds that occurs in many climate models as the climate warms, and to better understand why models give varying estimates of the strength of this negative feedback. The investigation may also provide new information on why models are deficient in their simulation of the present day clouds in these regions. The analysis will reveal which models simulate current clouds most realistically in the regions of interest, and relate this to the strength of the cloud feedbacks in the models. This will improve the uncertainty quantification of climate simulations and will provide theoretical understanding potentially leading to increased reliability of climate change projections. This will enhance the predictive understanding of the Earth system by analyzing the natural and anthropogenic components of global climate change in models. The primary methods involve the study of the clouds in the suite of CMIP5 model climate simulations and comparison of clouds in climate simulations with data from satellite measurement systems, with a particular emphasis on mixed-phase cloud physics, for which ice and water are present simultaneously. State-of-the-art climate model feedback analysis will be combined with new and more comprehensive observations of clouds available from modern measurement systems. Novel use of model simulations in combination with observations enables a deeper understanding of the role of clouds in climate change. Metrics that facilitate model-to-model and model-to-observation comparisons related to mixed-phase cloud physics will be developed and used to highlight challenges and opportunities for improving the state-of-the-science models. This investigation is a collaboration between the University of Washington, where the data work is concentrated and LLNL where the model data and the tools and expertise to do cloud feedback analysis are located. The grant supported the work of 3 different graduate students at different times (McCoy, Wall and Berry) Post-doctoral researcher Blaž Gasparini was also partially supported on this grant and led our collaboration with PNNL scientists. PNNL scientists also collaborated in the work of graduate student Wall (Po-Lun Ma). The main results of our research efforts are reported in 6 papers and 1 book chapter that were supported by this grant.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Theory and Simulation of Nanoscale Phenomena

The Center for Integrated Nanotechnologies (CINT) is a Department of Energy/Office of Science Nanoscale Science Research Center (NSRC), operating as a national user facility devoted to establishing the scientific principles that govern nanoscale integration. Nanoscale integration is defined as assembling diverse nanoscale materials across length scales to design and achieve new properties and functionality. The CINT Theory and Simulation of Nanoscale Phenomena thrust is the component of CINT dedicated to developing and applying theory to enable nanoscale integration. Our focus is on understanding and simulating the unique behavior of integrated materials and systems with nanoscale structure. This mission is achieved through collaborations with CINT Users, between thrust scientists, and with CINT scientists from other thrusts. Our research is focused on three science directions that together form the basis for integration at the nanoscale, namely (i) Hierarchical structure and dynamics in soft matter, (ii) Excitation and Transport in Nanostructured Systems, and (iii) Emergent phenomena at surfaces and interfaces. A broad spectrum of techniques is developed and applied including continuum fluid theory, atomistic and coarse-grained molecular dynamics simulations, static and dynamic electronic structure calculations, multiscale modeling, low-energy effective Hamiltonian methods, and perturbative and exact quantum many-body approaches. These tools are applied to physical systems of interest to CINT Users, the other CINT thrusts, and the general scientific community with the goals of understanding and controlling the interactions between nanoscale building blocks to assemble specific integrated structures, controlling energy transfer and other interactions over multiple length scales, and designing and exploiting the interactions within assembled structures to achieve new materials functionality.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

DOE OSTI2019

Fast, Dynamic, and Scalable Algorithms for Large-Scale Constrained Optimization

Scientists and engineers constantly aim to optimize an objective subject to physical, environmental, and/or resource constraints. The technique of using mathematical models to formulate and find real solutions of such problems is known as mathematical optimization, a process that has become invaluable for design and discovery in numerous scientific fields. This project has focused on the design, analysis, and implementation of high-performance computing algorithms for solving cutting-edge optimization problems. These include problems that involve (1) data uncertainties, such as those in the future supply, demand, and capacity of a given power system, (2) extreme numbers of alternatives, such as in the design of electrical power grids to avoid network vulnerabilities, and (3) real-time decisions, such as in the control of chemical reactors. The key features of the new algorithms are that they are fast, dynamic, and scalable to meet the computational requirements of scientists and researchers working to optimize large-scale, complex systems. The algorithms that have been designed, analyzed, and tested as part of the project can be characterized based on the types of optimization problems they have been designed to solve. Much of the work has focused on algorithms for solving large-scale constrained optimization problems. Contributions have also been made in the design of algorithms for unconstrained optimization, with some specialized methods for solving problems that have inherent nonsmoothness. Contributions have also been made in areas that have grown to prominence in the field over the five-year award period. These include the design of algorithms for solving large-scale stochastic optimization problems, such as those that arise in large-scale machine learning, and in complexity analyses for solving nonconvex problems, which has been a focal point of much recent work in continuous optimization. Overall, the project has supported work that has led to almost 30 articles that have been published or accepted to top journals in the field of mathematical optimization.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

CMS Physics Co-coordinator Teaching Buyout

Prof. Tulika Bose has recently served as the Physics Co-coordinator of the Compact Muon Solenoid (CMS) experiment at the CERN Large Hadron Collider (LHC). Her two-year term started in September 2017 and ended on August 31st, 2019. As CMS Physics Co-coordinator she was one of two lead scientists charged with reviewing the entire scientific output of the CMS experiment. She helped define the goals and types of research that collaborators undertook as they hunted for new physics -- exotic particles that have been theorized to exist as well as new yet unpredicted phenomena. She was responsible for organizing activities to produce and review the physics results of the CMS experiment. CMS scientists published well over 100 papers each year. As Physics Co-coordinator she oversaw all of the issues that went into ensuring that the results were correct and the best that can be produced.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2019

2019 LLNL Nuclear Science and Security Summer Internship Program

07 ISOTOPE AND RADIATION SOURCES↗

DOE OSTI2020

ASCR@40: Highlights and Impacts of ASCR’s Programs

A report compiled by the ASCAC Subcommittee on the 40-year history of ASCR for the U.S. Department of Energy’s Office of Advanced Scientific Computing Research. The Office of Advanced Scientific Computing Research (ASCR) sits within the Office of Science in the Department of Energy (DOE). Per their web pages, “the mission of the ASCR program is to discover, develop, and deploy computational and networking capabilities to analyze, model, simulate, and predict complex phenomena important to the DOE.” This succinct statement encompasses a wide range of responsibilities for computing and networking facilities; for procuring, deploying, and operating high performance computing, networking, and storage resources; for basic research in mathematics and computer science; for developing and sustaining a large body of software; and for partnering with organizations across the Office of Science and beyond. While its mission statement may seem very contemporary, the roots of ASCR are quite deep—long predating the creation of DOE. Applied mathematics and advanced computing were both elements of the Theoretical Division of the Manhattan Project. In the early 1950s, the Manhattan Project scientist and mathematician John von Neumann, then a commissioner for the AEC (Atomic Energy Commission), advocated for the creation of a Mathematics program to support the continued development and applications of digital computing. Los Alamos National Laboratory (LANL) scientist John Pasta created such a program to fund researchers at universities and AEC laboratories. Under several organizational name changes, this program has persisted ever since, and would eventually grow to become ASCR.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Technology Transfer Excellence Award NTXBio

While a scientist at Los Alamos National Laboratory, Dr. Alex Koglin developed two compounds to create a better vaccine for Tuberculosis (TB). In 2015, Dr. Koglin took an entrepreneurial leave of absence from the Laboratory to start NTXBio, LLC. His objective was to develop and commercialize a TB vaccine based on two compounds he created while a scientist at the Los Alamos. In 2018, a total of 1.5 million people died from TB. According to the World Health Organization TB is the leading infectious disease resulting in death worldwide. Approximately one-quarter of the world’s population is infected with mycobacterium tuberculosis, the bacteria that causes TB. Dr. Koglin non-exclusively licensed the two compounds from Los Alamos and began further development of the technology in collaboration with the Government of South Africa and universities to address the need for a vaccine to prevent TB. In their research and development of the compounds there was no evidence of cross resistance between other bacteria and the bacteria that causes TB. The compounds were tested in mouse models and demonstrated they can treat TB. Also, the tests have not shown any of the massive side effects that the current treatments for TB are showing. The company started production of the compounds using current manufacturing processes. Using these processes NTXBio could not produce the compounds at a reasonable price to be available for patients in third world countries. The company shifted to developing a new methodology “invitro synthetic biology” that can increase the production of these compounds and other vaccine molecules in a more affordable way. Dr. Koglin’s startup NTXBio is working to positively influence and secure the world vaccine supply by developing rapid on-demand production of the full spectrum of protein vaccines. Starting with the TB vaccine and advancing to common childhood vaccines, emergency and experimental vaccines such as those needed for COVID-19. NTXBio is capable of accelerated prototyping and manufacturing with increased purity and greater stability while reducing both cost and production time. The newly developed production methodology can be applied to not only the TB compounds licensed from Los Alamos, but also to their compounds that advance vaccine production for other diseases. Their technology produces vaccines fast enough to be fully deployable in areas without the need of specialized storage conditions and response times.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2020

Request for the establishment of quantum information foundries

Quantum information science still requires basic science research to achieve its full potential. However, scientists require access to fabricated device samples if we are to utilize the full toolset for solving the pressing issues in the field such as materials, device layout, or optimal error correction methods.Currently, access to samples is either prohibitively expensive, or requires close collaboration with one of the few groups in the world developing these systems. A dedicated quantum foundry could,in principle,provide affordable samples designed with current best practices to a host of scientists who otherwise do not have access. We detail several different foundry models which we believe will assist the community in developing the science for both the underlying processes, as well as the more advanced chip layout and circuit design. Opening access to the broader community has the potential to significantly lower the barrier to entry and vastly improve the ability for researchers in fields ranging from condensed matter to materials characterization to systems engineering to contribute to accelerating the advance of quantum information science and technology.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2020

Navigation and Meteorological Data from Multiple Sensors on Airborne Platform (NAVMET-AIR) Value-Added Product Report

The Navigation and Meteorological Data from Multiple Sensors on Airborne Platform (NAVMET-AIR) value-added product encompasses the aafnaviwg data set in the ARM Data Center (ADC), known as the IWG file, named for the Inter-Agency Working Group for Airborne Data and Telemetry Systems (IWGADTS). Its purpose is to produce a suite of tools to promote standardization of instrument interface, data format, and data processing. This data set’s contents are navigational and meteorological state variables at 1 Hz. It also contains higher-order data flags created by ARM Aerial Facility (AAF) scientists to aid analysis such as periods when the aircraft is flying level, operating in maneuvers, or flying through cloud. Due to the nature of research flights, the payload of the aircraft consists of many duplicate and overlapping instruments to ensure, in case of instrument failure, there is a backup to record the data. Measurements from multiple instruments are consolidated into a single file. Each variable of this data set is carefully chosen from the onboard instrumentation and quality checked by AAF scientists to create this wholistic and most accurate data set for airborne research. This document is intended to be a hub towards the individual “read me” files produced for each campaign. For reference about what instrument was used for calculations on specific days, the read me files are located in the ARM IOP archive at the addresses listed, or access the IOP (intensive operational period) database at https://www.archive.arm.gov/.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Understanding Interactive and Reproducible Computing With Jupyter Tools at Facilities

Increasingly Jupyter tools are being adopted and incorporated into High Performance Computing (HPC) and scientific user facilities. Adopting Jupyter tools enables more interactive and reproducible computational work at facilities across data life cycles. As the volume, variety, and scope of data grow, scientists need to be able to analyze and share results in user friendly ways. Human-centered research highlights design challenges around computational notebooks, and our qualitative user study shifts focus to better characterize how Jupyter tools are being used in HPC and science user facilities today. We conducted twenty-nine interviews, and obtained 103 survey responses from NERSC Jupyter users, to better understand the increasing role of interactive computing tools in DOE sponsored scientific work. We examine a range of issues that emerge using and supporting Jupyter in HPC ecosystems, including: how Jupyter is being used by scientists in HPC and user facility ecosystems; how facilities are purposefully supporting Jupyter in their ecosystems; feedback NERSC users have about the facility’s deployment, and, discuss features NERSC indicated would be helpful. We offer a variety of takeaways for staff supporting Jupyter at facilities, Project Jupyter and related open source communities, and funding agencies supporting interactive computing work.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Ghost particles and Project Poltergeist: Long-ago Lab physicists studied science that haunted them

A neutrino is a tiny, almost massless particle that travels at near light speeds. They were first formed in the early universe and are continually being produced in the nuclear reactions of stars, like the sun, and nuclear reactions on earth. The existence of these “ghost particles” was incredibly difficult to detect, but doing so has helped scientists better understand fundamental principles in physics. Los Alamos Manhattan Project scientist Frederick Reines, along with his colleague Clyde Cowan, is credited with the experimental discovery of the nearly massless elementary particle after his team definitively proved the neutrino’s existence in 1956. Reines received the Nobel Prize in Physics in 1995.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2021

Growth of New High-Quality and Large-Size Single Crystals via High Pressure Floating-Zone Technique

This award supports experimental materials physics research on a class of technologically relevant materials that cannot form under ambient conditions. With the complementary expertise at Louisiana State University (LSU) and infrastructure at Oak Ridge National Laboratory (ORNL), single crystals of these materials will be synthesized using the high-pressure floating-zone technique. Our ability to grow high-quality single crystals will facilitate advanced characterization of these materials and improve the scientific outcomes. In addition to in-house material characterization, the principle investigator will partner with scientists at ORNL and Brookhaven National Laboratory (BNL) to tackle materials problems using the state-of-the-art characterization techniques. This will allow us to explore the fundamental physics underlying the emergent phenomena only seen in materials prepared under extreme conditions. Our ultimate goal is to address one of the grand challenges of materials science: how do complex phenomena emerge from simple ingredients? The proposed project will also spearhead a unique opportunity to train “new breed” scientists, co-advised by experts at both LSU and U. S. Department of Energy National Laboratories. They will be essential for expanding materials physics research with ability to grow crystals, characterize their properties, and design new materials -- an imperative skill that is scarce in the U. S. scientific community.

36 MATERIALS SCIENCE↗

DOE OSTI2020

2020 LLNL Nuclear Science and Security Summer Internship Program

The Lawrence Livermore National Laboratory (LLNL) Nuclear Science and Security Summer Internship Program (NS 3 IP) is designed to give graduate students an opportunity to come to LLNL for 8–10 weeks of hands-on research. Students conduct research under the supervision of a staff scientist, attend a weekly lecture series, interact with other students, and present their work in poster format at the end of the program. Students also have the opportunity to meet staff scientists one-on-one, participate in LLNL facility tours (e.g., the National Ignition Facility and Center for Accelerator Mass Spectrometry), and gain a better understanding of the various science programs at LLNL. Due to the travel and access restrictions imposed by the COVID-19 pandemic, the 2020 NS 3 IP was organized as an “all-virtual” internship program. With LLNL’s extensive institutional support, students accessed the laboratory’s cyberinfrastructure through a secure virtual desktop environment and all seminars, mentor interactions, summer presentations, and laboratory tours were performed remotely. While this virtual internship format did not allow for hands-on laboratory research projects, both the interns and their mentors constructed creative research projects that maximized student exposure to nuclear science research that is relevant to DTRA and LLNL interests in nuclear security.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Joint Conference Support (ISPP and ICMP)

Funds are requested to support the attendance of junior scientists at two international conferences: the International Symposium on Phototrophic Prokaryotes (ISPP) and the International Conference on Microbial Photosynthesis (ICMP). Both will be held on the campus of the University of British Colombia in Vancouver in August of 2018. The primary goal of the ISPP is to provide a forum for students and senior investigators to gather in an informal setting to share new scientific findings on all aspects of bacterial phototrophs (both anoxygenic and oxygenic). The ICMP will appeal to those working on photosynthetic processes in these organisms as well as in eukaryotic phototrophs for other reasons (e.g. as major producers in the oceans, as models for marine phytoplankton, as biofuel-producing systems, etc.). The ICMP was designed to follow the ISPP such that students and postdocs could attend two conferences for the travel costs of one. The funds will be used to defray the registration costs of graduate student and postdoctoral attendees to make it even more affordable for junior scientists.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

2021 Stewardship Science Academic Programs Annual

I am a staff scientist at Sandia National Laboratories (SNL). I work on multiple fundamental-science projects and lead modeling/data-analysis for the stellar opacity experiments. I also work with theorists to refine plasma material-property calculations to make NNSA simulations more predictable. These are challenging and important problems for national security. In fact, our experiments raised questions about “opacity”, the property of matter that controls energy transport inside stars. This work was published by Nature due to its serious implication over broad applications, and our team received NNSA Defense Program Award of Excellence, both in 2015. Work at SNL is collegial and full of learning through interactions with the world’s finest experimentalists and theorists. When I started my Ph.D. program, working at a national lab was a dream position. Today, I collaborate with top scientists to solve mission-critical problems. The Stewardship Science Academic Programs (SSAP) and National Laser Users’ Facility (NLUF) played a vital role in the efficient learning and seamless transition to SNL.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗