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All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Advances in hexagon mesh-based flow direction modeling

Watershed delineation and flow direction representation are the foundations of streamflow routing in spatially distributed hydrologic modeling. A recent study showed that hexagon-based watershed discretization has several advantages compared to the traditional Cartesian (latitude–longitude) discretization, such as uniform connectivity and compatibility with other Earth system model components based on unstructured mesh systems (e.g., oceanic models). Despite these advantages, hexagon-based discretization has not been widely adopted by the current generation of hydrologic models. One major reason is that there is no existing model that can delineate hexagon-based watersheds while maintaining accurate representations of flow direction across various spatial resolutions. In this study, we explored approaches such as spatial resampling and hybrid breaching-filling stream burning techniques to improve watershed delineation and flow direction representation using a newly developed hexagonal mesh watershed delineation model (HexWatershed). We applied these improvements to the Columbia River basin and performed 16 simulations with different configurations. The results show that (1) spatial resampling modulates flow direction around headwaters and provides an opportunity to extract subgrid information; and (2) stream burning corrects the flow directions in mountainous areas with complex terrain features.

58 GEOSCIENCES↗
DOE OSTI2016

Low-Cost Gas Heat Pump for Building Space Heating

Gas-fired residential space heating in the U.S is predominantly supplied by furnaces and boilers. These technologies have been approaching their thermodynamic limit over the past 30 years and improvements for high efficiency units have approached a point of diminishing return. Electric heat pumps are growing in popularity but their heating performance at low ambient temperatures is poor. The development of a low-cost gas absorption heat pump would offer a significant improvement to current furnaces and boilers, and in heating dominated climate zones when compared to electric heat pumps. Gas absorption heat pumps (GAHP) exceed the traditional limit of thermal efficiency encountered by typical furnaces and boilers, and maintain high levels of performance at low ambient temperatures. The project team designed and demonstrated two low-cost packaged prototype GAHP space heating systems during the course of this investigation. Led by Stone Mountain Technologies Inc. (SMTI), with support from A.O. Smith, and the Gas Technology Institute (GTI), the cross-functional team completed research and development tasks including cycle modeling, 8× scaling of a compact solution pump, combustion system development, breadboard evaluation, fabrication of two packaged prototype units, third party testing of the first prototype, and the evaluation of cost and energy savings compared to high and minimum efficiency gas options. Over the course of the project and with the fabrication of two Alpha prototypes it was shown that this technology met or exceeded most of the stated project targets. At ambient temperatures of 47, 35, 17 and -13°F the prototypes achieved gas based coefficients of performance of 1.50, 1.44, 1.37, and 1.17, respectively. Both units operated with parasitic loads well below the 750 watt target with the second Alpha prototype operating 75-100 watts below the first Alpha prototype. Modulation of the units at 4:1 was achieved with the project goal of 2:1 modulation, which will allow for improved load matching. In addition, the energy savings analysis showed that a house in Albany, NY, Chicago, IL and Minneapolis, MN would save roughly 32, 28.5 and 36.5 MBtu annually when compared to a 100% efficient boiler, respectively. The gas absorption heat pump achieves this performance by using high grade heat from the combustion of natural gas in combination with low grade heat extracted from the ambient to produce medium grade heat suitable for space and water heating. Expected product features include conventional outdoor installation practices, 4:1 modulation, and reasonable economic payback. These factors position the technology to gain significant market penetration, resulting in a large reduction of energy use and greenhouse gas emissions for residential space heating.

03 NATURAL GAS↗
DOE OSTI2021

The Applicability of Unit Systems to High-Performance Computing Applications

Dimensional analysis is a key technique used to verify the soundness of scientific models. Most experts agree that engineering and scientific software would be made more reliable by integrating dimensional analysis in their type system. We explored how High Performance Computing (HPC) applications could integrate compile-time dimensional analysis. We started by investigating various implementation of unit systems for C++. Eventually, selecting the latest (and most advanced) one to apply to our test codes. We worked with code of increasing complexity, from a projectile trajectory calculation to the proxy-application Lulesh. This included our code, Springs-3D, which focuses on demonstrating language features while performing simple physic computations. Finally, our main contribution is a source-code analysis which extracts constraints on the dimension of all variables, functions, and constants in an application. This resulting system of equations is solved using the dimensions of a few of these objects. This analysis has the potential to greatly reduce the time spent performing dimensional analysis when refactoring application to use a representation of units.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2014

Technical Note for 8D Likelihood Effective Higgs Couplings Extraction Framework in the Golden Channel

In this technical note we present technical details on various aspects of the framework introduced in arXiv:1401.2077 aimed at extracting effective Higgs couplings in the $h\to 4\ell$ `golden channel'. Since it is the primary feature of the framework, we focus in particular on the convolution integral which takes us from `truth' level to `detector' level and the numerical and analytic techniques used to obtain it. We also briefly discuss other aspects of the framework.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2018

Collimators and beam dumps for the APS-upgrade storage ring - 25478

Argonne's Advanced Photon Source is planning a major upgrade that will increase the storage ring current from the present 100 mA to 200 mA and decrease the beam lifetime due to high charge-per-bunch and substantially smaller transverse beam size. Collimators in the horizontal plane around the storage ring will be used to control beam losses. These collimators will also serve as whole beam dumps in cases where the stored beam must be dumped for machine protection. Another feature of the Upgrade is swap-out injection, in which a stored electron bunch will be extracted to a dedicated swap-out dump when its charge falls to about 90% of the initial value and immediately replaced with a new bunch. Since particle losses will be concentrated in these collimators and beam dumps, there is the potential for high dose rates around these locations and for activation of nearby accelerator components. This paper contains a brief summary of the APS Upgrade, discusses electron losses in the storage ring, and presents calculations of dose rates and induced activity around the collimators and beam dumps. (authors)

43 PARTICLE ACCELERATORS↗
DOE OSTI2020

Theory and applications of parton pseudodistributions

We review the basic theory of the parton pseudodistributions approach and its applications to lattice extractions of parton distribution functions. The crucial idea of the approach is the realization that the correlator $M(z,p)$ of the parton fields is a function $M(ν,-z^2)$ of Lorentz invariants $ν=-(zp)$, the Ioffe time, and the invariant interval $z^2$. This observation allows to extract the Ioffe-time distribution $M(ν,-z^2)$ from Euclidean separations z accessible on the lattice. Another basic feature is the use of the ratio $M(ν,-z^2)≡M(ν,-z^2)/M(0,-z^2)$, that allows to eliminate artificial ultraviolet divergence generated by the gauge link for spacelike intervals. The remaining $z^2$-dependence of the reduced Ioffe-time distribution $M(ν,-z^2)$ corresponds to perturbative evolution, and can be converted into the scale-dependence of parton distributions $f(x,μ^2)$ using matching relations. The ν-dependence of $M(ν,-z^2)$ governs the x-dependence of parton densities $f(x,μ^2)$. The perturbative evolution was successfully observed in exploratory quenched lattice calculation. The analysis of its precise data provides a framework for extraction of parton densities using the pseudodistributions approach. It was used in the recently performed calculations of the nucleon and pion valence quark distributions. We also discuss matching conditions for the pion distribution amplitude and generalized parton distributions, the lattice studies of which are now in progress.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

Joint Measurement of Lensing-Galaxy Correlations Using SPT and DES SV Data

We measure the correlation of galaxy lensing and cosmic microwave background lensing with a set of galaxies expected to trace the matter density field. The measurements are performed using pre-survey Dark Energy Survey (DES) Science Verification optical imaging data and millimeter-wave data from the 2500 square degree South Pole Telescope Sunyaev-Zel’dovich (SPT-SZ) survey. The two lensing-galaxy correlations are jointly fit to extract constraints on cosmological parameters, constraints on the redshift distribution of the lens galaxies, and constraints on the absolute shear calibration of DES galaxy lensing measurements. We show that an attractive feature of these fits is that they are fairly insensitive to the clustering bias of the galaxies used as matter tracers. The measurement presented in this work confirms that DES and SPT data are consistent with each other and with the currently favored ΛCDM cosmological model. It also demonstrates that joint lensing-galaxy correlation measurement considered here contains a wealth of information that can be extracted using current and future surveys.

cosmic background radiation↗
DOE OSTI2024

Extracting doubly excited state lifetimes in helium directly in the time domain with attosecond noncollinear four-wave-mixing spectroscopy

The helium atom, with one nucleus and two electrons, is a prototypical system to study quantum many-body dynamics. Doubly excited states, or quantum states in which both electrons are excited by one photon, showcase electronic-correlation mediated effects. In this paper, the natural lifetimes of the doubly excited 1 P o 2 s n p Rydberg series and the 1 S e 2 p 2 dark state in helium in the 60–65 eV region are measured directly in the time domain with extreme-ultraviolet/near-infrared noncollinear attosecond four-wave-mixing (FWM) spectroscopy. The measured lifetimes agree with lifetimes deduced from spectral linewidths and theoretical predictions, and the roles of specific decay mechanisms are considered. While complex spectral line shapes in the form of Fano resonances are common in absorption spectroscopy of autoionizing states, the background-free and thus homodyned character of noncollinear FWM results exclusively in Lorentzian spectral features in the absence of strong-field effects. The onset of strong-field effects that would affect the extraction of accurate natural lifetimes in helium by FWM is determined to be approximately 0.3 Rabi cycles. This study provides a systematic understanding of the FWM parameters necessary to enable accurate lifetime extractions, which can be utilized in more complex quantum systems in the future. Published by the American Physical Society 2024

Rupprecht, Patrick (ORCID:000000026491793X)↗
DOE OSTI2019

Perturbing neutrino oscillations around the solar resonance

Atmospheric neutrinos at low energies, $E \lesssim 500$ MeV, are known to be a rich source of information on lepton mixing parameters. We formulate a simple perturbative framework to elucidate the characteristic features of neutrino oscillation at around the solar-scale enhancement due to the matter effect. The clearest message that we could extract from our perturbation theory is that CP violation in the appearance oscillation probability is large, a factor of $\sim 10$ times larger than CP violation at around the atmospheric-scale oscillation maximum. The underlying mechanism for this is that one of the suppression factors on the CP phase-dependent terms due to the smallness of $\Delta m^2_{21} / \Delta m^2_{31}$ is dynamically lifted by the solar-scale enhancement. Our framework has a unique feature as a perturbation theory in which a large $\Delta m^2_{31}$ term outside the key 1-2 sector for the solar-scale resonance does not yield sizable corrections. On the contrary, the larger the $\Delta m^2_{31}$, the smaller the higher-order corrections.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Multiresolution classification of turbulence features in image data through machine learning

During large-scale simulations, intermediate data products such as image databases have become popular due to their low relative storage cost and fast in-situ analysis. Serving as a form of data reduction, these image databases have become more acceptable to perform data analysis on. In this work, we present an image-space detection and classification system for extracting vortices at multiple scales through wavelet-based filtering. A custom image-space descriptor is used to encode a large variety of vortex-types and a machine learning system is trained for fast classification of vortex regions. By combining a radial-based histogram descriptor, a bag of visual words feature descriptor, and a support vector machine, our results show that we are able to detect and classify vortex features at various sizes at multiple scales. Once trained, our framework enables the fast extraction of vortices on new, unknown image datasets for flow analysis.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Robust Machine Learning Inference from X-ray Absorption Near Edge Spectra through Featurization

X-ray absorption spectroscopy (XAS) is a commonly employed technique for characterizing functional materials. In particular, X-ray absorption near edge spectra (XANES) encode local coordination and electronic information, and machine learning approaches to extract this information are of significant interest. To date, most ML approaches for XANES have primarily focused on using the raw spectral intensities as input, overlooking the potential benefits of incorporating spectral transformations and dimensionality reduction techniques into ML predictions. Here, in this work, we focused on systematically comparing the impact of different featurization methods on the performance of ML models for XAS analysis. We evaluated the classification and regression capabilities of these models on computed data sets and validated their performance on previously unseen experimental data sets. Our analysis revealed an intriguing discovery: the cumulative distribution function feature achieves both high prediction accuracy and exceptional transferability. This remarkably robust performance can be attributed to its tolerance to horizontal shifts in the spectra, which is crucial when validating models using experimental data. While this work exclusively focuses on XANES analysis, we anticipate that the methodology presented here will hold promise as a versatile asset to the broader spectroscopy community.

36 MATERIALS SCIENCE↗
DOE OSTI2021

A Method to Extract Spatially Resolved Polycyclic Aromatic Hydrocarbon Emission from Spitzer Spectra: Application to M51

The mid-infrared spectrum contains rich diagnostics to probe the physical properties of galaxies, among which the pervasive emission features from polycyclic aromatic hydrocarbons (PAHs) offer promising means of estimating the star formation rate (SFR) relatively immune from dust extinction. This paper investigates the effectiveness of PAH emission as a SFR indicator on subkiloparsec scales by studying the Spitzer/IRS mapping-mode observations of the nearby grand-design spiral galaxy M51. We present a new approach of analyzing the spatial elements of the spectral data cube that simultaneously maximizes spatial resolution and spatial coverage, while yielding reliable measurements of the total, integrated 5–20 μm PAH emission. We devise a strategy of extracting robust PAH emission using spectra with only partial spectral coverage, complementing missing spectral regions with properly combined mid-infrared photometry. We find that in M51 the PAH emission correlates tightly with the extinction-corrected far-ultraviolet, near-ultraviolet, and Hα emission, from scales of ∼0.4 kpc close to the nucleus to 6 kpc out in the disk of the galaxy, indicating that PAH serves as an excellent tracer of SFR over a wide range of galactic environments. But regional differences exist. Close to the active nucleus of M51 the 6.2 μm feature is weaker, and the overall level of PAH emission is suppressed. The spiral arms and the central star-forming region of the galaxy emit stronger 7.7 and 8.6 μm PAH features than the inter-arm regions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Infrared-Transparent Semiconductor Membranes for Electromagnetic Interference Shielding of Millimeter Waves

Here, it is demonstrated that single-crystalline and highly doped GaAs membranes are excellent candidates for realizing infrared-transparent shields of electromagnetic interference at millimeter frequencies. Measured optical transmittance spectra for the semiconductor membranes show resonant features between 750 and 2500 nm, with a 100% maximum transmittance. The shielding effectiveness of the membranes is extracted from measured scattering parameters between 65 and 85 GHz. Selected GaAs membranes and membranes/polyamide films exhibit shielding effectiveness ranging from 22 to 40 dB, which are suitable values to ensure the safe operation of infrared devices for commercial applications. Theoretical calculations based on a plane wave model show that the interplay of primary reflection and multiple internal reflections of the radio-frequency waves results in broadband shielding capabilities of the membrane between 10 and 300 GHz.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2017

Visualizing dispersive features in 2D image via minimum gradient method

Here, we developed a minimum gradient based method to track ridge features in a 2D image plot, which is a typical data representation in many momentum resolved spectroscopy experiments. Through both analytic formulation and numerical simulation, we compare this new method with existing DC (distribution curve) based and higher order derivative based analyses. We find that the new method has good noise resilience and enhanced contrast especially for weak intensity features and meanwhile preserves the quantitative local maxima information from the raw image. An algorithm is proposed to extract 1D ridge dispersion from the 2D image plot, whose quantitative application to angle-resolved photoemission spectroscopy measurements on high temperature superconductors is demonstrated.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

SSAGES: Software Suite for Advanced General Ensemble Simulations

Molecular simulation has emerged as an essential tool for modern-day research, but obtaining proper results and making reliable conclusions from simulations requires adequate sampling of the system under consideration. To this end, a variety of methods exist in the literature that can enhance sampling considerably, and increasingly sophisticated, effective algorithms continue to be developed at a rapid pace. Implementation of these techniques, however, can be challenging for experts and non-experts alike. There is a clear need for software that provides rapid, reliable, and easy access to a wide range of advanced sampling methods, and that facilitates implementation of new techniques as they emerge. Here we present SSAGES, a publicly available Software Suite for Advanced General Ensemble Simulations designed to interface with multiple widely used molecular dynamics simulations packages. SSAGES allows facile application of a variety of enhanced sampling techniques—including adaptive biasing force, string methods, and forward flux sampling—that extract meaningful free energy and transition path data from all-atom and coarse grained simulations. A noteworthy feature of SSAGES is a user-friendly framework that facilitates further development and implementation of new methods and collective variables. In this study, the use of SSAGES is illustrated in the context of simple representative applications involving distinct methods and different collective variables that are available in the current release of the suite.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Strangers in a foreign land: ‘Yeastizing’ plant enzymes

Abstract Expressing plant metabolic pathways in microbial platforms is an efficient, cost‐effective solution for producing many desired plant compounds. As eukaryotic organisms, yeasts are often the preferred platform. However, expression of plant enzymes in a yeast frequently leads to failure because the enzymes are poorly adapted to the foreign yeast cellular environment. Here, we first summarize the current engineering approaches for optimizing performance of plant enzymes in yeast. A critical limitation of these approaches is that they are labour‐intensive and must be customized for each individual enzyme, which significantly hinders the establishment of plant pathways in cellular factories. In response to this challenge, we propose the development of a cost‐effective computational pipeline to redesign plant enzymes for better adaptation to the yeast cellular milieu. This proposition is underpinned by compelling evidence that plant and yeast enzymes exhibit distinct sequence features that are generalizable across enzyme families. Consequently, we introduce a data‐driven machine learning framework designed to extract ‘yeastizing’ rules from natural protein sequence variations, which can be broadly applied to all enzymes. Additionally, we discuss the potential to integrate the machine learning model into a full design‐build‐test cycle.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

MO-AB-BRA-09: Development and Evaluation of a Biomechanical Modeling-Assisted CBCT Reconstruction Technique (Bio-Recon)

Purpose: To develop a Bio-recon technique by incorporating the biomechanical properties of anatomical structures into the deformation-based CBCT reconstruction process. Methods: Bio-recon reconstructs the CBCT by deforming a prior high-quality CT/CBCT using a deformation-vector-field (DVF). The DVF is solved through two alternating steps: 2D–3D deformation and finite-element-analysis based biomechanical modeling. 2D–3D deformation optimizes the DVF through an ‘intensity-driven’ approach, which updates the DVF to minimize intensity mismatches between the acquired projections and the simulated projections from the deformed CBCT. In contrast, biomechanical modeling optimizes the DVF through a ‘biomechanical-feature-driven’ approach, which updates the DVF based on the biophysical properties of anatomical structures. In general, Biorecon extracts the 2D–3D deformation-optimized DVF at high-contrast structure boundaries, and uses it as the boundary condition to drive biomechanical modeling to optimize the overall DVF, especially at low-contrast regions. The optimized DVF is fed back into the 2D–3D deformation for further optimization, which forms an iterative loop. The efficacy of Bio-recon was evaluated on 11 lung patient cases, each with a prior CT and a new CT. Cone-beam projections were generated from the new CTs to reconstruct CBCTs, which were compared with the original new CTs for evaluation. 872 anatomical landmarks were also manually identified by a clinician on both the prior and new CTs to track the lung motion, which was used to evaluate the DVF accuracy. Results: Using 10 projections for reconstruction, the average (± s.d.) relative errors of reconstructed CBCTs by the clinical FDK technique, the 2D–3D deformation-only technique and Bio-recon were 46.5±5.9%, 12.0±2.3% and 10.4±1.3%, respectively. The average residual errors of DVF-tracked landmark motion by the 2D–3D deformation-only technique and Bio-recon were 5.6±4.3mm and 3.1±2.4mm, respectively. Conclusion: Bio-recon improved accuracy for both the reconstructed CBCT and the DVF. The accurate DVF can benefit multiple clinical practices, such as image-guided adaptive radiotherapy. We acknowledge funding support from the American Cancer Society (RSG-13-326-01-CCE), from the US National Institutes of Health (R01 EB020366), and from the Cancer Prevention and Research Institute of Texas (RP130109).

60 APPLIED LIFE SCIENCES↗