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NASA NTRS2017

Biogeochemical Protocols and Diagnostics for the CMIP6 Ocean Model Intercomparison Project (OMIP)

The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948-2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF [subscript] 6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are founded on those from previous phases of the Ocean Carbon-Cycle Model Intercomparison Project. They have been merged and updated to reflect improvements concerning gas exchange, carbonate chemistry, and new data for initial conditions and atmospheric gas histories. Code is provided to facilitate their implementation.

Carbon↗

NASA NTRS2015

Climate Model Diagnostic Analyzer

The comprehensive and innovative evaluation of climate models with newly available global observations is critically needed for the improvement of climate model current-state representation and future-state predictability. A climate model diagnostic evaluation process requires physics-based multi-variable analyses that typically involve large-volume and heterogeneous datasets, making them both computation- and data-intensive. With an exploratory nature of climate data analyses and an explosive growth of datasets and service tools, scientists are struggling to keep track of their datasets, tools, and execution/study history, let alone sharing them with others. In response, we have developed a cloud-enabled, provenance-supported, web-service system called Climate Model Diagnostic Analyzer (CMDA). CMDA enables the physics-based, multivariable model performance evaluations and diagnoses through the comprehensive and synergistic use of multiple observational data, reanalysis data, and model outputs. At the same time, CMDA provides a crowd-sourcing space where scientists can organize their work efficiently and share their work with others. CMDA is empowered by many current state-of-the-art software packages in web service, provenance, and semantic search.

cloud computing↗

NASA NTRS2018

Sixth NASA Glenn Research Center Propulsion Control and Diagnostics (PCD) Workshop

The Intelligent Control and Autonomy Branch at NASA Glenn Research Center hosted the Sixth Propulsion Control and Diagnostics Workshop on August 22-24, 2017. The objectives of this workshop were to disseminate information about research being performed in support of NASA Aeronautics programs; get feedback from peers on the research; and identify opportunities for collaboration. There were presentations and posters by NASA researchers, Department of Defense representatives, and engine manufacturers on aspects of turbine engine modeling, control, and diagnostics.

Collaboration↗

NASA NTRS2019

Rest-Frame UV and Optical Emission Line Diagnostics of Ionized Gas Properties: a Test Case in a Star-Forming Knot of a Lensed Galaxy at Z ∼ 1.7

We examine the diagnostic power of rest-frame ultraviolet (UV) nebular emission lines, and compare them to more commonly used rest-frame optical emission lines, using the test case of a single star-forming knot of the bright lensed galaxy RCSGA 032727–132609 at redshift z ∼ 1.7. This galaxy has complete coverage of all the major rest-frame UV and optical emission lines from Magellan/MagE and Keck/NIRSPEC. Using the full suite of diagnostic lines, we infer the physical properties: nebular electron temperature (T(sub e)), electron density (n(sub e)), oxygen abundance (log (O/H), ionization parameter [log (q), and interstellar medium (ISM) pressure (log (P/k)]. We examine the effectiveness of the different UV, optical, and joint UV–optical spectra in constraining the physical conditions. Using UV lines alone we can reliably estimate log (q), but the same is difficult for log (O/H). UV lines yield a higher (∼1.5 dex) log (P/k) than the optical lines, as the former probes a further inner nebular region than the latter. For this comparison, we extend the existing Bayesian inference code IZI, adding to it the capability to infer ISM pressure simultaneously with metallicity and ionization parameter. This work anticipates future rest-frame UV spectral data sets from the James Webb Space Telescope (JWST) at high redshift and from the Extremely Large Telescope (ELT) at moderate redshift.

Acharyya, Ayan↗

NASA NTRS2020

Arcjet Supplemental Diagnostics

This document proposes a new set of diagnostics designed to be implemented on the NASA Ames miniature Arcjet Research Chamber (mARC) for improved characterization of the flow. The diagnostics are grouped into three classes:higher cadence measurements, higher spatial resolution, and computer vision techniques for improved analysis of existing imaging. The goal is to better understand and quantify the following properties: flow statistics/uncertainty, temporal & spatial non-uniformity, flow temperature/enthalpy

Haw, Magnus A.↗

NASA NTRS2017

Educational and Scientific Applications of Climate Model Diagnostic Analyzer

Climate Model Diagnostic Analyzer (CMDA) is a web-based information system designed for the climate modeling and model analysis community to analyze climate data from models and observations. CMDA provides tools to diagnostically analyze climate data for model validation and improvement, and to systematically manage analysis provenance for sharing results with other investigators. CMDA utilizes cloud computing resources, multi-threading computing, machine-learning algorithms, web service technologies, and provenance-supporting technologies to address technical challenges that the Earth science modeling and model analysis community faces in evaluating and diagnosing climate models. As CMDA technology and infrastructure have matured, we have developed the educational and scientific applications of CMDA. Educationally, CMDA supported the summer school of the JPL Center for Climate Sciences in 2014, 2015, and 2016. In the summer school, the students work on group research projects where CMDA provide datasets, analysis tools, and provenance support utility tools. Each student is assigned to a virtual machine with CMDA installed in Amazon Web Services. Scientifically, we have developed several science use cases of CMDA covering various topics, datasets, and analysis types. Each of the science use cases is described in terms of a scientific goal, datasets used, the analysis tools used, scientific results discovered, an analysis result such as output plots and data files, and a link to the corresponding analysis service call with all the input arguments filled.

Bao, Qihao↗

NASA NTRS2022

Is [Y/Mg] a Reliable Age Diagnostic for FGK Stars?

Current spectroscopic surveys are producing large catalogs of chemical abundances for stars of all types. The yttrium-to-magnesium ratio, [Y/Mg], has emerged as a candidate age indicator for solar twins in the local stellar neighborhood. However, it is unclear whether it is a viable age diagnostic for more diverse stellar types, so we investigate [Y/Mg] as an age indicator for the FGK-type planet host stars observed by Kepler. We find that the [Y/Mg] "Clock" is most precise for solar twins, with a [Y/Mg]/age slope of m = −0.0370 ±0.0071 dex Gyr −1 and σ Age = 2.6 Gyr. We attribute the lower precision compared to literature results to nonsolar twins contaminating our solar twin sample and recommend a 1.5 Gyr systematic uncertainty for stellar ages derived with any [Y/Mg]–Age relation. We also analyzed the [Y/Mg] Clock as a function of T eff , log⁡ g, and metallicity individually and find no strong trends, but we compute statistically significant [Y/Mg]–Age relations for subsamples defined by ranges in T eff , log g, and metallicity. Finally, we compare [Y/Mg] and rotation ages and find statistically similar trends as for isochrone ages, although we find that rotation ages perform better for GK dwarfs while isochrones perform better for FG subgiants. We conclude that the [Y/Mg] Clock is most precise for solar twins and analogs but is also a useful age diagnostic for FGK stars.

Travis A. Berger↗

NASA NTRSDate not supplied

Development of Langmuir and Spatially Resolved OES Diagnostics for Arc Jet Shock and Boundary Layer Measurements Relevant to Atmospheric Re-Entry Environments

The second-generation miniature Arc Jet Research Chamber (mARC) ground testing facility at NASA Ames requires physical characterization of its supersonic plasma flow to verify numerical models and material sample testing. Two types of plasma diagnostics will be utilized: Langmuir probes and optical emission spectroscopy (OES). Several single and triple Langmuir probes have been constructed and will be inserted parallel to the flow via a sweep arm to measure post-shock electron temperature and number density along radial profiles at different axial distances. Due to the high heat flux (200-3000 W/cm2) sweep durations are necessarily short (< 0.1 s). Measuring these properties near the probe surface provide characterization of the post-shock environment. This is an important metric for validating coupled CFD-material codes, and will provide insight into longstanding thermocouple anomalies attributed to charging of heatshield surfaces. An OES system has also been assembled to obtain spatially resolved density and temperature for various flow species. The system consists of a convex lens that forms an image of the plasma onto a 16-channel linear fiber array, which will simultaneously capture the spectra from sixteen different locations. The light emission from the plasma is then focused by a spherical mirror into a spectrometer and recorded with a camera. These measurements non-intrusively provide a new spatially resolved flow characterization capability. This will initially be used to resolve issues with shock radiation interference in pyrometer measurements of material surface temperature. The design of each diagnostic and any initial results will be discussed.

Ethan Main-Loam Leong↗

NASA NTRS2023

The Case for Solar Full-disk Spectral Diagnostics: Chromosphere to Corona

In the context of the recent call for white papers for the Decadal Survey for Solar and Space Physics (Heliophysics) 2024–2033, we present the argument that spatially-resolved spectral diagnostics over the full solar disk should be made a high-priority goal in Heliophysics and lead to the development of a mission concept that has the potential to become a cornerstone of the Heliophysics System Observatory (HSO). We claim that a mission providing consistent full-disk sampling of plasma properties (Doppler-shifts, non-thermal velocities, electron densities, elemental composition, etc.) of the chromosphere-corona system at the dynamic timescales of solar eruptive phenomena will revolutionize the field by adding the spectral diagnostics capability to the highly successful concept of full-disk imaging, everywhere, all the time, represented by the Solar Dynamics Observatory (SDO). We argue for it to be developed by the end of the current Decadal Survey cycle around the lessons learned from spectroscopic missions in the current NASA development pipeline, that include innovative strategies for faster integration of large fields-of-view, and comprehensive temperature coverage.

Sun↗

NASA NTRSDate not supplied

Overview of Extractive and Optical PM Measurements from the NASA SE-5 High Pressure Flame Diagnostics Laboratory

Soot emissions measurements of multiphase non-premixed flames are sparse in the literature due to the complexities of sampling in such environments. We present an overview from on-going work at the NASA SE-5 High Pressure Flame Diagnostics laboratory focusing on soot and gaseous emissions at elevated pressures. SE-5 is a gaseous and liquid fueled high pressure flame tube facility capable of operating at pressures up to 880 psia, cooling capacity of 4,000,000 BTU/hr, liquid fuel flow rates up to 2 GPH, and an equivalence ratio range of 0.2 (fuel lean) to 4 (fuel rich). SE-5 provides optical access via four UV-grade fused silica optical windows of the primary reaction zone enabling non-intrusive optical diagnostics of the flame.

Soot↗

DOE OSTI2011

Ultra-Short Electron Bunch and X-Ray Temporal Diagnostics with an X-Band Transverse Deflector

The measurement of ultra-short electron bunches on the femtosecond time scale constitutes a very challenging problem. In X-ray free-electron laser facilities such as the Linac Coherent Light Source (LCLS), generation of sub-ten femtosecond X-ray pulses is possible, and some efforts have been put into both ultra-short electron and X-ray beam diagnostics. Here we propose a single-shot method using a transverse rf deflector (X-band) after the undulator to reconstruct both the electron bunch and X-ray temporal profiles. Simulation studies show that about 1 fs (rms) time resolution may be achievable in the LCLS and is applicable to a wide range of FEL wavelengths and pulse lengths. The jitter, resolution and other related issues will be discussed. The successful operation of the Linac Coherent Light Source (LCLS), with its capability of generating free-electron laser (FEL) X-ray pulses from a few femtoseconds (fs) up to a few hundred fs, opens up vast opportunities for studying atoms and molecules on this unprecedented ultrashort time scale. However, tremendous challenges remain in the measurement and control of these ultrashort pulses with femtosecond precision, for both the electron beam (e-beam) and the X-ray pulses. For ultrashort e-beam bunch length measurements, a standard method has been established at LCLS using an S-band radio-frequency (rf) deflector, which works like a streak camera for electrons and is capable of resolving bunch lengths as short as {approx} 10 fs rms. However, the e-beam with low charges of 20 pC at LCLS, which is expected to be less than 10 fs in duration, is too short to be measured using this transverse deflector. The measurement of the electron bunch length is helpful in estimating the FEL X-ray pulse duration. However, for a realistic beam, such as that with a Gaussian shape or even a spiky profile, the FEL amplification varies along the bunch due to peak current or emittance variation. This will cause differences between the temporal shape or duration of the electron bunch and the X-ray pulse. Initial experiments at LCLS have revealed that characterization of the X-ray pulse duration on a shot-by-shot basis is critical for the interpretation of the data. However, a reliable x-ray pulse temporal diagnostic tool is not available so far at the LCLS. We propose a novel method in this paper to characterize the FEL X-ray pulse duration and shape. A transverse rf deflector is used in conjunction with an e-beam energy spectrometer, located after the FEL undulator. By measuring the difference in the e-beam longitudinal phase space between FEL-on and FEL-off, we can obtain the time-resolved energy loss and energy spread induced from the FEL radiation, allowing the FEL X-ray temporal shape to be reconstructed.

43 PARTICLE ACCELERATORS↗

DOE OSTI2012

Ultrasensitive microanalytical diagnostic methods for rickettsial pathogens

A strategic CRADA was established between Sandia National Laboratories (SNL) and the University of Texas Medical Branch (UTMB) at Galveston to address pressing needs for US protection against biological weapons of mass destruction (WMD) and emerging infectious diseases. The combination of unique expertise and facilities at UTMB and SNL enabled interdisciplinary research efforts in the development of rapid and accurate diagnostic methods for early detection of trace priority pathogen levels. Outstanding postdoctoral students were also trained at both institutions to help enable the next generation of scientists to tackle the challenging interdisciplinary problems in the area of biodefense and emerging infectious diseases. Novel approaches to diagnostics were developed and the both the speed of assays as well as the detection sensitivity were improved by over an order of magnitude compared to traditional methods. This is a significant step toward more timely and specific detection of dangerous infections. We developed in situ polymerized porous polymer monoliths that can be used as (1) size exclusion elements for capture and processing of rickettsial infected cells from a sample, (2) photopatternable framework for grafting high densities of functionalized antibodies/fluorescent particles using novel monolith chemistry. Grafting affinity reagents specific to rickettsial particles enables rapid, ultra-sensitive assays by overcoming transport limitations of traditional planar assay approaches. We have selectively trapped particles and bacteria at the cell trap and have also detected picomolar mouse IL-6 captured with only 20 minutes total incubation times using the densely patterned monolith framework. As predicted, the monolith exhibits >10x improvements in both capture speed and capture density compared to traditional planar approaches. The most significant advancements as part of this CRADA is the optimization of techniques allowing the detection of <10 rickettsial cells in a whole blood sample. This detection limit is over 2 orders of magnitude more sensitive that previously reported methods and overcomes a key hurdle in ability to sense dangerous infections before they are too late to treat and contain. We also showed that in the new format, cross-reactivity with interfering species is reduced thereby increasing the specificity of such tests. Promising options to treat whole blood and avoid clogging and non-specific fouling of sensors were also developed.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

DOE OSTI2012

Fermilab PXIE Beam Diagnostics Development and Testing at the HINS Beam Facility

Fermilab is planning the construction of a prototype front end of the Project X linac. The Project X Injector Experiment (PXIE) is expected to accelerate 1 mA CW H- beam up to 30 MeV. Some of the major goals of the project are to test a CW RFQ and H- source, a broadband bunch-by-bunch beam chopper and a low-energy superconducting linac. The successful characterization and operation of such an accelerator place stringent requirements on beamline diagnostics. These crucial beam measurements include bunch currents, beam orbit, beam phase, bunch length, transverse profile and emittance and beam halo and tails, as well as the extinction performance of the broadband chopper. This paper presents PXIE beam measurement requirements and instrumentation development plans. Presented are plans to test key instruments at the Fermilab High Intensity Neutrino Source (HINS) beam facility. Since HINS is already an operational accelerator, utilizing HINS for instrumentation testing will allow for quicker development of the required PXIE diagnostics.

43 PARTICLE ACCELERATORS↗

DOE OSTI2014

Automated diagnostic kiosk for diagnosing diseases

An automated and autonomous diagnostic apparatus that is capable of dispensing collection vials and collections kits to users interesting in collecting a biological sample and submitting their collected sample contained within a collection vial into the apparatus for automated diagnostic services. The user communicates with the apparatus through a touch-screen monitor. A user is able to enter personnel information into the apparatus including medical history, insurance information, co-payment, and answer a series of questions regarding their illness, which is used to determine the assay most likely to yield a positive result. Remotely-located physicians can communicate with users of the apparatus using video tele-medicine and request specific assays to be performed. The apparatus archives submitted samples for additional testing. Users may receive their assay results electronically. Users may allow the uploading of their diagnoses into a central databank for disease surveillance purposes.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2015

Design of a diagnostic residual gas analyzer for the ITER divertor

One of the ITER diagnostics having reached an advanced design stage is a diagnostic RGA for the divertor, i.e. residual gas analysis system for the ITER divertor, which is intended to sample the divertor pumping duct region during the plasma pulse and to have a response time compatible with plasma particle and impurity lifetimes in the divertor region. Main emphasis is placed on helium (He) concentration in the ducts, as well as the relative concentration between the hydrogen isotopes (H2, D2, T2). Measurement of the concentration of radiative gases, such as neon (Ne) and nitrogen (N2), is also intended. Numerical modeling of the gas flow from the sampled region to the cluster of analysis sensors, through a long (~8m long, ~110mm diameter) sampling pipe terminating in a pressure reducing orifice, confirm that the desired response time (~1s for He or D2) is achieved with the present design.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2017

Laboratory-based validation of the baseline sensors of the ITER diagnostic residual gas analyzer

The divertor-specific ITER Diagnostic Residual Gas Analyzer (DRGA) will provide essential information relating to DT fusion plasma performance. This includes pulse-resolving measurements of the fuel isotopic mix reaching the pumping ducts, as well as the concentration of the helium generated as the ash of the fusion reaction. In the present baseline design, the cluster of sensors attached to this diagnostic's differentially pumped analysis chamber assembly includes a radiation compatible version of a commercial quadrupole mass spectrometer, as well as an optical gas analyzer using a plasma-based light excitation source. This paper reports on a laboratory study intended to validate the performance of this sensor cluster, with emphasis on the detection limit of the isotopic measurement. This validation study was carried out in a laboratory set-up that closely prototyped the analysis chamber assembly configuration of the baseline design. This includes an ITER-specific placement of the optical gas measurement downstream from the first turbine of the chamber's turbo-molecular pump to provide sufficient light emission while preserving the gas dynamics conditions that allow for \textasciitilde 1 s response time from the sensor cluster [1].

Biewer, Theodore↗

DOE OSTI2017

"Ion" B-Dot and Faraday Cup Results Located Inside The Cathode Knob Of The Self Magnetic Pinch (Smp) Diode (A New Diagnostic For Diode Behavior?)

This paper describes our effort to measure the back-streaming ions emitted from the target x-ray convertor and thus estimate the ion contribution to the A-K gap bipolar current flow. Knowing the ion contribution is quite important in order to calculate the expected x-ray dose and compare it with the actual measurements. Our plans were first to measure the total ion current using B-dot monitors, Rogowski coils, and Faraday cups and then to utilize filtered Faraday cups and time of flight techniques to identify and measure the various ionic species. The kinetic energy (velocities) of the ions should help evaluate the actual voltage applied at the anode-cathode (A-K) gap. LSP simulations found that the most prominent ions are protons and carbon single plus (C+). For an 8-MV A-K voltage, the estimated proton current back-streaming through an 1 cm in diameter hollow cathode tip was on the average 3 kA and the carbon current 0.7 kA. Since only a small fraction of the ions will make it through the cylindrical aperture, the corresponding total currents were calculated to be respectively 25kA for proton and 7 kA for carbon ions, a quite substantial contribution to the total bipolar beam current. Hence, approximately only 10% of the total back-streaming ionic currents could make it through the hollow cathode tip aperture. Unfortunately the diagnostic cables connecting the Faraday cup and the B-dot monitors to the screen room scopes experienced a large amount of charge pick-up that obliterated our effort to directly measure those relatively small currents. However, we succeeded in measuring those currents indirectly with activation techniques [Contribution of the back-streaming ions to the self-magnetic pinch (SMP) diode Current., M. G. Mazarakis, M. G. Mazarakis, M. E. Cuneo, S. D. Fournier, M. D. Johnston, M. L. Kiefer, J. J. Leckbee, D. S. Nielsen, B.V.Oliver, M. E. Sceiford, S. C. Simpson, T. J. Renk, C. L. Ruiz, T. J. Webb, and D. Ziska. Subitted for publication.]. In the following sections we present some typical cable pick-up results and also our efforts to verify that the observed “current” scope traces were indeed not ion currents but instead cable charge pic-up. Interestingly enough we also discovered that the appearance of those “currents” are in synchronism with the A-K gap impedance variation (decrease) and the MITL sheath current re-trapping. Hence those B-dots or Faraday cups could be utilized as diode behavior diagnostics.

Mazarakis, Michael G.↗

DOE OSTI2019

Fluorescence intensity monitors as intensity and beam-position diagnostics for X-ray free-electron lasers

For LCLS-II, a fluorescence intensity monitor for the non-invasive, pulse-by-pulse normalization of experiments has been developed. A prototype diagnostic was constructed with a microchannel plate assembly and two photodiodes. The diagnostic was then installed in the LCLS SXR instrument Kirkpatrick–Baez mirror chamber with the detectors located above the vertically reflecting mirror. The linearity, noise and position sensitivity of the detectors have been characterized. The photodiode responsivity is suitable for high pulse energies. The microchannel plate detector shows sufficient responsivity over a wide range of pulse energies. The relative signal from the two photodiodes provides a sensitive measure of the X-ray beam position. The fluorescence intensity monitor provides intensity normalization while being compatible with high incident power, a 0.93 MHz repetition rate and ultra-high vacuum.

Heimann, Philip↗