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At least 1,027 records · Page 57

Inverse design of nanoporous crystalline reticular materials with deep generative models

Reticular frameworks are crystalline porous materials that form via the self-assembly of molecular building blocks in different topologies, with many having desirable properties for gas storage, separation, catalysis, biomedical applications and so on. The notable variety of building blocks makes reticular chemistry both promising and challenging for prospective materials design. Here we propose an automated nanoporous materials discovery platform powered by a supramolecular variational autoencoder for the generative design of reticular materials. We demonstrate the automated design process with a class of metal–organic framework (MOF) structures and the goal of separating carbon dioxide from natural gas or flue gas. Our model shows high fidelity in capturing MOF structural features. Here, we show that the autoencoder has a promising optimization capability when jointly trained with multiple top adsorbent candidates identified for superior gas separation. MOFs discovered here are strongly competitive against some of the best-performing MOFs/zeolites ever reported.

36 MATERIALS SCIENCE↗

Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea

Although many Archaea have AMP-Acs (acetyl-coenzyme A synthetase) and ADP-Acs, the extant methanogenic genus Methanosarcina is the only identified Archaeal genus that can utilize acetate via acetate kinase (Ack) and phosphotransacetylase (Pta). Despite the importance of ack as the potential urkinase in the ASKHA phosphotransferase superfamily, an origin hypothesis does not exist for the acetate kinase in Bacteria, Archaea, or Eukarya. Here we demonstrate that Archaeal AMP-Acs and ADP-Acs contain paralogous ATPase motifs previously identified in Ack, which demonstrate a novel relation between these proteins in Archaea. The identification of ATPase motif conservation and resulting structural features in AMP- and ADP-acetyl-CoA synthetase proteins in this study expand the ASKHA superfamily to include acetyl-CoA synthetase. Additional phylogenetic analysis showed that Pta and MaeB sequences had a common ancestor, and that the Pta lineage within the halophilc archaea was an ancestral lineage. Lastly, these results suggested that divergence of a duplicated maeB within an ancient halophilic, archaeal lineage formed a putative pta ancestor. These results provide a potential scenario for the establishment of the Ack/Pta pathway and provide novel insight into the evolution of acetate metabolism for all three domains of life.

59 BASIC BIOLOGICAL SCIENCES↗

Band structure engineering and thermoelectric properties of charge-compensated filled skutterudites

Thermoelectric properties of semiconductors are intimately related to their electronic band structure, which can be engineered via chemical doping. Dopant Ga in the cage-structured skutterudite Co 4 Sb 12 substitutes Sb sites while occupying the void sites. Combining quantitative scanning transmission electron microscopy and first-principles calculations, we show that Ga dual-site occupancy breaks the symmetry of the Sb-Sb network, splits the deep triply-degenerate conduction bands, and drives them downward to the band edge. The charge-compensating nature of the dual occupancy Ga increases overall filling fraction limit. By imparting this unique band structure feature, and judiciously doping the materials by increasing the Yb content, we promote the Fermi level to a point where carriers are in energetic proximity to these features. Increased participation of these heavier bands in electronic transport leads to increased thermopower and effective mass. Further, the localized distortion from Ga/Sb substitution enhances the phonon scattering to reduce the thermal conductivity effectively.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

MOF-derived multifractal porous carbon with ultrahigh lithium-ion storage performance

Porous carbon is one of the most promising alternatives to traditional graphite materials in lithium-ion batteries. This is not only attributed to its advantages of good safety, stability and electrical conductivity, which are held by all the carbon-based electrodes, but also especially ascribed to its relatively high capacity and excellent cycle stability. Here we report the design and synthesis of a highly porous pure carbon material with multifractal structures. This material is prepared by the vacuum carbonization of a zinc-based metal-organic framework, which demonstrates an ultrahigh lithium storage capacity of 2458 mAh g -1 and a favorable high-rate performance. The associations between the structural features and the lithium storage mechanism are also revealed by small-angle X-ray scattering (SAXS), especially the closed pore effects on lithium-ion storage.

Science & Technology - Other Topics↗

Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging

Energy-resolved neutron imaging is investigated as a real-time diagnostic tool for visualization and in-situ measurements of "blind" processes. This technique is demonstrated for the Bridgman-type crystal growth enabling remote and direct measurements of growth parameters crucial for process optimization. The location and shape of the interface between liquid and solid phases are monitored in real-time, concurrently with the measurement of elemental distribution within the growth volume and with the identification of structural features with a ~100 μm spatial resolution. Such diagnostics can substantially reduce the development time between exploratory small scale growth of new materials and their subsequent commercial production. This technique is widely applicable and is not limited to crystal growth processes.

36 MATERIALS SCIENCE↗

Synthesis and Characterization of Potassium Aryl- and Alkyl-Substituted Silylchalcogenolate Salts

Treatment of either triphenyl(chloro)silane or tert-butyldiphenyl(chloro)silane with potassium metal in THF, followed by addition of 18-crown-6, affords [K(18-crown-6)][SiPh 3 ] (1) and [K(18-crown-6)][SiPh 2 t Bu] (2), respectively, as the reaction products in high yield. Compounds 1 and 2 were fully characterized including by multi-nuclear NMR and IR spectroscopies. Addition of elemental chalcogen to either 1 or 2, results in facile chalcogen insertion into the potassium-silicon bond to afford the silylchalcogenolates, [K(18-crown-6)][E– SiPh2R] (E = S, R = Ph (3); Se, R = Ph (4); E = Te, R = Ph (5); E = S, R = t Bu (6); E = Se, R = t Bu (7); E = Te, R = t Bu (8)), in moderate to good yield. The silylchalcogenolates reported herein were characterized by multi-nuclear NMR and IR spectroscopies, and their solid-state molecular structures were determined by single-crystal X-ray crystallography. Importantly, the reported compounds crystallize as discrete monomers in the solid-state, a structural feature not previously observed in silylchalcogenolates, providing well-defined access routes into systematic metal complexation studies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural and elemental changes in glioblastoma cells in situ : complementary imaging with high resolution visible light- and X-ray microscopy

The glioblastoma (GBM) is characterized by a short median survival and an almost 100% tumor related mortality. GBM cells exhibit highly invasive behavior whose mechanisms are not yet fully understood. The present study explores application of X-ray and visible light microscopy to display the elemental and structural images of cells from 3 patient derived GMB samples and an established GMB cell line. Slight differences in elemental concentrations, in actin cytoskeleton organization and cell morphology were noted between all cells types by X-ray fluorescence and full field soft X-ray microscopy, as well as the Structured Illumination Super-resolution Microscope (SIM). Different sample preparation approaches were used to match each imaging technique. While preparation for SIM included cell fixation and staining, intact frozen hydrated cells were used for the trace element imaging by hard X-ray fluorescence and exploration of the structural features by soft X-ray absorption tomography. In conclusion, each technique documented differences between samples with regard to morphology and elemental composition and underscored the importance of use of multiple patient derived samples for detailed GBM study.

59 BASIC BIOLOGICAL SCIENCES↗

Critical design of heterogeneous catalysts for biomass valorization: current thrust and emerging prospects

Catalysis in the heterogeneous phase plays a crucial role in the valorization of biorenewable substrates with controlled reactivity, efficient mechanical process separation, greater recyclability and minimization of environmental effects. In this minireview, we have critically analyzed the design aspects of catalysts with multifunctional properties in making biomass conversion processes more productive and sustainable. The catalytic systems have been categorized into subgroups such as metal oxides and phosphates, supported metals, functionalized porous materials, acidic and ion-exchange resins, zeolites and carbonaceous materials to discuss their structural features and active sites towards intrinsic reactivity and selectivity in the transformation of biomass intermediates via hydrolysis, dehydration, hydrodeoxygenation and oxidation pathways. Recent advances in photocatalytic materials for the oxidation of biomass-derived small molecules (such as sugars, alcohols, carboxylic acids) and lignin model compounds and the role of different heteroatoms in improving photo-electronic properties are discussed. The synergistic effect of metal nanoparticulate sites and acid–base supports of bimetallic catalytic systems in performing multistep cascade processes in one-pot are analyzed.

09 BIOMASS FUELS↗

Metal sulfide ion exchangers: superior sorbents for the capture of toxic and nuclear waste-related metal ions

Metal sulfide ion-exchangers (MSIEs) represent a new addition to the field of ion exchange materials. This is a growing class of materials that display exceptional selectivity and rapid sorption kinetics for soft or relatively soft metal ions as a result of their soft basic frameworks. Without requiring functionalization, they outperform the most efficient sulfur-functionalized materials. This is the first review focusing on this class of materials; it covers the most important MSIEs, focusing on their synthesis, structural features and ion-exchange chemistry. Furthermore, recent developments in the engineered and composite forms of MSIEs are described. Future research opportunities are also discussed in the hope of inspiring additional scientists to engage in this new area of research on sulfidic ion-exchange materials.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Lipid bilayer thickness determines cholesterol's location in model membranes

Cholesterol is an essential biomolecule of animal cell membranes, and an important precursor for the biosynthesis of certain hormones and vitamins. It is also thought to play a key role in cell signaling processes associated with functional plasma membrane microdomains (domains enriched in cholesterol), commonly referred to as rafts. In all of these diverse biological phenomena, the transverse location of cholesterol in the membrane is almost certainly an important structural feature. Using a combination of neutron scattering and solid-state 2 H NMR, we have determined the location and orientation of cholesterol in phosphatidylcholine (PC) model membranes having fatty acids of different lengths and degrees of unsaturation. The data establish that cholesterol reorients rapidly about the bilayer normal in all the membranes studied, but is tilted and forced to span the bilayer midplane in the very thin bilayers. The possibility that cholesterol lies flat in the middle of bilayers, including those made from PC lipids containing polyunsaturated fatty acids (PUFAs), is ruled out. Finally, these results support the notion that hydrophobic thickness is the primary determinant of cholesterol's location in membranes.

59 BASIC BIOLOGICAL SCIENCES↗

Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe–S cluster assembly centers

Early studies of the bacterial Fe–S cluster assembly system provided structural details for how the scaffold protein and the cysteine desulfurase interact. This work and additional work on the yeast and human systems elucidated a conserved mechanism for sulfur donation but did not provide any conclusive insights into the mechanism for iron delivery from the iron donor, frataxin, to the scaffold. We previously showed that oligomerization is a mechanism by which yeast frataxin (Yfh1) can promote assembly of the core machinery for Fe–S cluster synthesis both in vitro and in cells, in such a manner that the scaffold protein, Isu1, can bind to Yfh1 independent of the presence of the cysteine desulfurase, Nfs1. Here, in the absence of Yfh1, Isu1 was found to exist in two forms, one mostly monomeric with limited tendency to dimerize, and one with a strong propensity to oligomerize. Whereas the monomeric form is stabilized by zinc, the loss of zinc promotes formation of dimer and higher order oligomers. However, upon binding to oligomeric Yfh1, both forms take on a similar symmetrical trimeric configuration that places the Fe–S cluster coordinating residues of Isu1 in close proximity of iron-binding residues of Yfh1. This configuration is suitable for docking of Nfs1 in a manner that provides a structural context for coordinate iron and sulfur donation to the scaffold. Moreover, distinct structural features suggest that in physiological conditions the zinc-regulated abundance of monomeric vs. oligomeric Isu1 yields [Yfh1]·[Isu1] complexes with different Isu1 configurations that afford unique functional properties for Fe–S cluster assembly and delivery.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mapping a stable solvent structure landscape for aprotic Li–air battery organic electrolytes

Electrolyte instability is one of the greatest impediments that must be overcome for the practical development of rechargeable aprotic Li–air batteries. In this work, we establish a comprehensive framework for evaluation of the stability of potential organic electrolytes for aprotic Li–air batteries that is based on four key descriptors: Bond dissociation energy, deprotonation free energy (i.e., Acidity), Nucleophilic substitution free energy, and Electrochemical oxidation/reduction. These parameters were calculated for several classes of organic compounds. The chemical stability of the molecules was studied experimentally under conditions designed to mimic the aprotic Li–air battery environment (heating in the presence of excess KO2 and Li2O2). In general, the calculated and experimental data agreed well for alkanes, alkenes, ethers, aromatics, carbonates, and S-containing and N-containing compounds. Using this dataset, we identified functional groups and other structural features of organic molecules that may be suitable for aprotic Li–air battery electrolyte design.

Feng, Shuting↗

Effects of crystal phase and composition on structurally ordered Pt–Co–Ni/C ternary intermetallic electrocatalysts for the formic acid oxidation reaction

In this paper, to enhance the electrocatalytic performance of the formic acid oxidation reaction (FAOR), structurally ordered face-centered tetragonal (fct) Pt–Co–Ni/C intermetallic nanoparticles were synthesized via an impregnation reduction method, followed by post heat-treatment. It was found that an ordered intermetallic PtCo phase prevails rather than PtNi as the principal part for the ternary Pt–Co–Ni alloy after being annealed at high temperature, namely, Ni atoms merely serve as the substitute for Co in the lattice of Pt–Co–Ni intermetallics possessing the same atomic stack as PtCo intermetallics. In addition, there is a limitation for Ni to replace Co for the intermetallic PtCo phase, otherwise, most likely excessive Ni would replace the Pt atoms and damage the atomically ordered structure. Benefiting from the ordered structural features and rational introduction of the third transition metal to modify the distance between Pt and Pt atoms, the Pt–Co–Ni/C ordered intermetallic nanoparticles exhibit an enhancement in catalytic activity for the FAOR compared with Pt/C, the PtNi/C alloy and ordered intermetallic PtCo/C nanoparticles. Furthermore, the presence of Ni in the ordered intermetallic Pt–Co–Ni/C catalyst leads to a noticeable improvement in durability compared with the ordered intermetallic PtCo/C catalyst. Finally, the present work reveals opportunities for the rational design of ternary electrocatalysts with enhanced catalytic performance for fuel cell applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural signature and transition dynamics of Sb 2 Te 3 melt upon fast cooling

Crystalline Sb 2 Te 3 is widely studied due to its important applications in memory materials and topological insulators. The liquid and amorphous structures of this compound as well as the dynamics upon quenching, however, are yet to be fully understood. In this paper, we have systematically studied the dynamical properties and local structure of Sb 2 Te 3 at different temperatures using ab initio molecular dynamics simulations. The calculated structure factors agree well with the experimental results. The atomic number density and mean-squared displacement as a function of temperature clearly indicate three states as the temperature decreases, namely, melt, undercooled liquid and glass state, respectively. By analyzing the chemical environments and bond-angle distribution functions, we demonstrate that the most probable short-range motifs in the Sb 2 Te 3 system are defective octahedrons, and they are connected with each other via four-fold rings. Finally, this interesting structural feature may be responsible for the high fragility and easy phase transition upon glass forming that is applied in memory devices.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A succinct strategy for construction of nanoporous ionic organic networks from a pyrylium intermediate

Hydroxyl group and pyridinium salt-bifunctionalized nanoporous ionic organic networks prepared via a simple two-step strategy under metal- and template-free conditions are presented. Additionally, the structural features of the resultant polymer (e.g. high surface area, abundant hydroxyl groups and ionic functionalities) made it a promising candidate as an efficient scavenger of toxic oxo-anions from water.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Synthesis and Electronic Structure of Anionic 1,1'-diphosphametallocenes of Chromium and Iron

In this work, we report two anionic diphosphametallocenates, [K(2.2.2-crypt)][M(PC 4 Me 4 ) 2 ] (M = Cr, 2-Cr ; Fe, 2-Fe ). Both are low-spin ( S = ½) by EPR spectroscopy and SQUID magnetometry. This contrasts the high-spin ( S = ) ferrocenate, [K(2.2.2-crypt)][Fe(C 5 H 2 -1,2,4- t Bu) 2 ] ( 4-Fe ). Quantum chemical calculations suggest this is due to significant differences in ligand field splitting of the d-orbitals which also explain structural features in the 2-M complexes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Molecular understanding of heteronuclear active sites in heme–copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling

Heme-copper oxidases (HCO), nitric oxide reductases (NOR), and sulfite reductases (SiR) catalyze the multi-electron and multi-proton reductions of O 2 , NO, and SO 3 2- , respectively. Each of these reactions is important to drive cellular energy production through respiratory metabolism and HCO, NOR, and SiR evolved to contain heteronuclear active sites containing heme/copper, heme/nonheme iron, and heme-[4Fe-4S] centers, respectively. The complexity of the structures and reactions of these native enzymes, along with their large sizes and/or membrane associations, make it challenging to fully understand the crucial structural features responsible for the catalytic properties of these active sites. Here, we summarize progress that has been made to better understand these heteronuclear metalloenzymes at the molecular level though study of the native enzymes along with insights gained from biomimetic models comprising either small molecules or proteins. Further understanding the reaction selectivity of these enzymes is discussed through comparisons of their similar heteronuclear active sites, and we offer outlook for further investigations and areas of ongoing study.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗