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Center of Excellence in Space Data and Information Sciences

This report summarizes the range of computer science-related activities undertaken by CESDIS for NASA in the twelve months from July 1, 1998 through June 30, 1999. These activities address issues related to accessing, processing, and analyzing data from space observing systems through collaborative efforts with university, industry, and NASA space and Earth scientists. The sections of this report which follow, detail the activities undertaken by the members of each of the CESDIS branches. This includes contributions from university faculty members and graduate students as well as CESDIS employees. Phone numbers and e-mail addresses appear in Appendix F (CESDIS Personnel and Associates) to facilitate interactions and new collaborations.

Yesha, Yelena↗

Center of Excellence in Space Data and Information Sciences

This report summarizes the range of computer science-related activities undertaken by CESDIS for NASA in the twelve months from July 1, 1997 through June 30, 1998. These activities address issues related to accessing, processing, and analyzing data from space observing systems through collaborative efforts with university, industry, and NASA space and Earth scientists. The sections of this report which follow, detail the activities undertaken by the members of each of the CESDIS branches. This includes contributions from university faculty members and graduate students as well as CESDIS employees. Phone numbers and e-mail addresses appear in Appendix E (CESDIS Personnel and Associates) to facilitate interactions and new collaborations.

Source record↗

Center of Excellence in Space Data and Information Sciences

This report summarizes the range of computer science-related activities undertaken by CESDIS for NASA in the twelve months from July 1, 1996 through June 30, 1997. These activities address issues related to accessing, processing, and analyzing data from space observing systems through collaborative efforts with university, industry,and NASA space and Earth scientists. The sections of this report which follow, detail the activities undertaken by the members of each of the CESDIS branches. This includes contributions from university faculty members and graduate students as well as CESDIS employees. Phone numbers and e-mail addresses appear in Appendix D (CESDIS Personnel and Associates) to facilitate interactions and new collaborations.

Source record↗

EOS ground data systems: A description and interface overview

The Earth Observing System (EOS) is planned as a space-based measurement system, earth-science research program, and data and information system (EOSDIS). It will consist of several high data rate spacecraft with multiple earth sensing instruments which provide investigators with a thorough, longterm view of the earth's environment. Up to seven spacecraft may be supported at once, either in operational, checkout, or testing phases; and the average data rate from the EOS satellites in orbit at any one time is expected to be from 18 to 60 Mbps. Providing the data processing and flight operations support for EOS will be the EOSDIS Core System (ECS). The ECS will command and control the spacecraft; process and store the EOS data; provide access to the data for years; and support researchers. The data processing aspects of the ECS consist of a collection of Distributed Active Archive Centers (DAAC's) which perform the product generation, data archive and distribution, and information management services. Flight operations aspects will be provided by the EOS Operations Center, by instrument control centers, and by widely distributed instrument support terminals. The communications and system management aspects will be provided by the EOSDIS Science Network and the System Management Center. In addition to the EOS satellite data, other data sets from earlier earth science missions are also to be added to designated DAAC's. Other ground data systems which will provide support to EOS for acquiring, transporting, processing, and distributing the transformed spacecraft data are currently being defined or are being upgraded for the EOS era. These systems include the Space Network consisting of the Tracking and Data Relay Satellite System (TDRSS), the TDRSS Ground Terminals, and the Network Control Center as well as the night Dynamics Facility, the EOS Data and Operations System, and EOS Communications. This paper briefly describes data handling by the ECS, the support data systems, their interfaces, and their roles.

Smith, Gene↗

Evaluation of the VIIRS Land Algorithms at Land PEATE

The Land Product Evaluation and Algorithm Testing Element (Land PEATE), a component of the Science Data Segment of the National Polar-orbiting Operational Environmental Satellite System (NPOESS) Preparatory Project (NPP), is being developed at the NASA Goddard Space Flight Center (GSFC). The primary task of the Land PEATE is to assess the quality of the Visible Infrared Imaging Radiometer Suite (VIIRS) Land data products made by the Interface Data Processing System (IDPS) using the Operational (OPS) Code during the NPP era and to recommend improvements to the algorithms in the IDPS OPS code. The Land PEATE uses a version of the MODIS Adaptive Processing System (MODAPS), NPPDAPS, that has been modified to produce products from the IDPS OPS code and software provided by the VIIRS Science Team, and uses the MODIS Land Data Operational Product Evaluation (LDOPE) team for evaluation of the data records generated by the NPPDAPS. Land PEATE evaluates the algorithms by comparing data products generated using different versions of the algorithm and also by comparing to heritage products generated from different instrument such as MODIS using various quality assessment tools developed at LDOPE. This paper describes the Land PEATE system and some of the approaches used by the Land PEATE for evaluating the VIIRS Land algorithms during the pre-launch period of the NPP mission and the proposed plan for long term monitoring of the quality of the VIIRS Land products post-launch.

Wolfe, Robert E.↗

The payload connection - Approaches to onboard data processing for scientific systems on the Space Shuttle

The integration of payload instruments into the Command and Data Management Subsystem (CDMS) of the Space Shuttle Spacelab is discussed. Specific emphasis is on the distributed (self-contained processor) vs centralized (Spacelab Computer) approach to science payload utilization of these control and data handling capabilities. An overview of the Spacelab CDMS is first given. A synopsis of the integration process for Spacelab Missions 1, 2, and 3 is discussed. Three different hardware approaches to payload command and data handling are then categorized from which Spacelab implementations to date are derived. The different types of Spacelab Mission 3 payload CDMS hardware and software being used are discussed, including examples of microprocessors and data acquisition systems. Preliminary costs for Spacelab application software vs other flight software approaches are compared. A standard RAU interface that would permit a range of ECOS services to be provided, yet be implemented as a mass-produceable unit for incorporation into payloads, is proposed, in keeping with the trend toward simplifying the integration effort, standardizing CDMS interfaces, and ultimately lowering cost.

Konkel, C. R.↗

Moon and Mars Analog Mission Activities for Mauna Kea 2012

Rover-based 2012 Moon and Mars Analog Mission Activities (MMAMA) scientific investigations were recently completed at Mauna Kea, Hawaii. Scientific investigations, scientific input, and science operations constraints were tested in the context of an existing project and protocols for the field activities designed to help NASA achieve the Vision for Space Exploration. Initial science operations were planned based on a model similar to the operations control of the Mars Exploration Rovers (MER). However, evolution of the operations process occurred as the analog mission progressed. We report here on the preliminary sensor data results, an applicable methodology for developing an optimum science input based on productive engineering and science trades discussions and the science operations approach for an investigation into the valley on the upper slopes of Mauna Kea identified as "Apollo Valley".

Graham, Lee D.↗

The challenges of theory-software translation

Background: Software is now ubiquitous within research. In addition to the general challenges common to all software development projects, research software must also represent, manipulate, and provide data for complex theoretical constructs. Ensuring this process of theory-software translation is robust is essential to maintaining the integrity of the science resulting from it, and yet there has been little formal recognition or exploration of the challenges associated with it. Methods: We thematically analyse the outputs of the discussion sessions at the Theory-Software Translation Workshop 2019, where academic researchers and research software engineers from a variety of domains, and with particular expertise in high performance computing, explored the process of translating between scientific theory and software. Results: We identify a wide range of challenges to implementing scientific theory in research software and using the resulting data and models for the advancement of knowledge. We categorise these within the emergent themes of design, infrastructure, and culture, and map them to associated research questions. Conclusions: Systematically investigating how software is constructed and its outputs used within science has the potential to improve the robustness of research software and accelerate progress in its development. We propose that this issue be examined within a new research area of theory-software translation, which would aim to significantly advance both knowledge and scientific practice.

97 MATHEMATICS AND COMPUTING↗

Functional-type modeling approach and data-driven parameterization of methane emissions in wetlands (Final Technical Science Report)

Our goals are to improve understanding and quantitative representation of the multiple processes that affect methane emissions at a high (patch level, vertically detailed) spatial resolution, and translate this understanding to improved modeling capability of coastal wetland fluxes using the E3SM Land Model (ELM v1) wetland CH4 biogeochemistry module. We propose an experimental approach to identify and parameterize uncertainties in ELM. Understanding of methane emissions can be improved along three conceptual axes: (i) horizontal (ecohydrological patch resolution), (ii) vertical (through the depth of the soil column), and (iii) process level (e.g., resolving microbial pathways, vegetation specific transport pathways). Along each of the three axes, we will characterize, quantify, and model, the key ecological, hydrological, and meteorological controls of methane (CH4) flux heterogeneity in four model coastal wetlands.

54 ENVIRONMENTAL SCIENCES↗

Improving an Atlantic Fisheries DSS using Sea Surface Salinity Data from NASA's Aquarius Mission

This report assesses the capacity of incorporating NASA#s Aquarius SSS (sea surface salinity) data into the SMAST (School of Marine Science and Technology) DSS for Fisheries Science. This data will enhance the SMAST DSS by providing SSS over a large area. Aquarius is a focused satellite mission designed to measure global SSS. SSS mapping is limited because conventional in situ SSS sampling is too sparse to give a large-scale view of the salinity variability. Aquarius will resolve missing physical processes that link the water cycle, the climate, and the ocean. The SMAST Fisheries program provides a DSS for fisheries science. It collects fisheries and environmental data, integrates them into a suite of data assimilation ocean models, and provides hindcasts, nowcasts, and forecasts for fisheries research, fisheries management, and the fishery industry. Currently, SMAST is using SSS data from the National Oceanic and Atmospheric Administration#s National Data Buoy Center. The SMAST DSS would be enhanced with SSS data from the Aquarius mission.

Guest, DeNeice↗

NASA Goddard Giovanni Support for YOTC

The fundamental challenges to overcoming our shortcomings in understanding and modeling/predicting tropical convection have been twofold: I) the need to represent the broad range of scales applicable to the tropical organization problem (i.e. cumulus to planetary), and II) the lack of observations that adequately and simultaneously characterize this broad range of scales and that also provide three-dimensional information on thermodynamic, radiative and dynamical interactions, including cloud microphysical processes. In regards to the second challenge, it should be stressed that this problem will not be solved through the production and examination of one or a few high quality long-term records of fundamental quantities (e.g., SST, water vapor, cloud fraction). Rather, an alternative and more comprehensive paradigm is needed, one that integrates the multitude of applicable resources and measures of tropical convection in a manner that that can be better utilized by the diagnostic, modeling and forecasting communities to more completely and coherently focus on the problem.Because the goal of YOTC involves examining a scientifically complex, multi-scale process , rather than documenting the characteristics of a single parameter (e.g., SST, cloud cover), YOTC has an IOP perspective that targets a period, May 2008 April 2010, long enough to encompass many cases of tropical convection activity in many of its most challenging yet influential forms. This includes mesoscale and synoptic variability, easterly waves and hurricanes, convectively coupled waves, the MJO and the culmination of these in terms of the monsoon, their interactions with the extra-tropics, and mean characteristics such as tropical-to-subtropical transitions. The YOTC time period and length are driven in part by the following: 1) keeping the multi-sensor/multi-platform and model-analyses data sets and associated infrastructure manageable, 2) facilitating a focused effort by the research and operational communities on a specific scientific problem, and 3) capitalizing on the recent key additions to the armada of satellites (e.g., CloudSat and CALIPSO). The proposed dissemination framework for the YOTC satellite data archive is based on the Giovanni system. Giovanni is a web-based application developed by the NASA Goddard Earth Science (GES) Data and Information Service Center (DISC) that provides a simple and intuitive way to visualize, analyze, and access/download vast amounts of Earth science remote sensing data. A prototype YOTC Giovanni System (hereafter YOTC-GS) is in the process of being developed. YOTC-GS will provide access to level 2 (i.e. swath level data) and/or level 3 (i.e. gridded/mapped data) forms of satellite data, the choice or both depending on what is appropriate and relevant. The former is needed and better suited for detailed process examination, exploiting the highest temporal-spatial resolutions available and comparison to regional cloud-system resolving model / cloud resolving model (CSRM/CRM) model output. The latter is needed and more well suited for examination of phenomena, conditions and processes on large to global scales, and for comparisons to global model analyses, prediction and simulation output.

Ostrenga, Dana↗

Scientific Data Purchase Project Overview Presentation

The Scientific Data Purchase (SDP) project acquires science data from commercial sources. It is a demonstration project to test a new way of doing business, tap new sources of data, support Earth science research, and support the commercial remote sensing industry. Phase I of the project reviews simulated/prototypical data sets from 10 companies. Phase II of the project is a 3 year purchase/distribution of select data from 5 companies. The status of several SDP projects is reviewed in this viewgraph presentation, as is the SDP process of tasking, verification, validation, and data archiving. The presentation also lists SDP results for turnaround time, metrics, customers, data use, science research, applications research, and user feedback.

Holekamp, Kara↗

Sensor Management for Applied Research Technologies (SMART)-On Demand Modeling (ODM) Project

NASA requires timely on-demand data and analysis capabilities to enable practical benefits of Earth science observations. However, a significant challenge exists in accessing and integrating data from multiple sensors or platforms to address Earth science problems because of the large data volumes, varying sensor scan characteristics, unique orbital coverage, and the steep learning curve associated with each sensor and data type. The development of sensor web capabilities to autonomously process these data streams (whether real-time or archived) provides an opportunity to overcome these obstacles and facilitate the integration and synthesis of Earth science data and weather model output. A three year project, entitled Sensor Management for Applied Research Technologies (SMART) - On Demand Modeling (ODM), will develop and demonstrate the readiness of Open Geospatial Consortium (OGC) Sensor Web Enablement (SWE) capabilities that integrate both Earth observations and forecast model output into new data acquisition and assimilation strategies. The advancement of SWE-enabled systems (i.e., use of SensorML, sensor planning services - SPS, sensor observation services - SOS, sensor alert services - SAS and common observation model protocols) will have practical and efficient uses in the Earth science community for enhanced data set generation, real-time data assimilation with operational applications, and for autonomous sensor tasking for unique data collection.

Goodman, M.↗

NASA's Soil Moisture Active and Passive (SMAP) Mission

The Soil Moisture Active-Passive (SMAP) Mission is one of the first Earth observation satellites being formulated by NASA in response to the 2007 National Research Council s Decadal Survey. SMAP will make global measurements of soil moisture at the Earth's land surface and its freeze-thaw state. These measurements will allow significantly improved estimates of water, energy and carbon transfers between the land and atmosphere. Soil moisture measurements are also of great importance in assessing flooding and monitoring drought. Knowledge gained from SMAP observations can help mitigate these natural hazards, resulting in potentially great economic and social benefits. SMAP observations of soil moisture and freeze/thaw timing over the boreal latitudes will also reduce a major uncertainty in quantifying the global carbon balance and help to resolve an apparent missing carbon sink over land. The SMAP mission concept will utilize an L-band radar and radiometer sharing a rotating 6-meter mesh reflector antenna flying in a 680 km polar orbit with an 8-day exact ground track repeat aboard a 3-axis stabilized spacecraft to provide high-resolution and high-accuracy global maps of soil moisture and freeze/thaw state every two to three days. In addition, the SMAP project will use these surface observations with advanced modeling and data assimilation to provide estimates of deeper root-zone soil moisture and net ecosystem exchange of carbon. SMAP recently completed its Phase A Mission Concept Study Phase for NASA and transitioned into Phase B (Formulation and Detailed Design). A number of significant accomplishments occurred during this initial phase of mission development. The SMAP project held several open meetings to solicit community feedback on possible science algorithms, prepared preliminary draft Algorithm Theoretical Basis Documents (ATBDs) for each mission science product, and established a prototype algorithm testbed to enable testing and evaluation of the performance of candidate algorithms. SMAP conducted an Applications Workshop in September 2009 to coordinate with potential application users interested in the mission data. A draft Applications Plan describing the Project s planned outreach to potential applications users has been prepared and will be updated during Phase B. SMAP made a significant evaluation of the potential terrestrial radio frequency interference (RFI) source environment and established radiometer and radar flight hardware and ground processing mitigation approaches. SMAP finalized its science orbit and orbit injection approach to optimize launch mass and prepared launch and commissioning scenarios and timeline. A science data communications approach was developed to maximize available science data volume to improve science margins while maintaining moderately short data product latencies to support many potential applications using existing ground assets and with minimum impact to the flight system. SMAP developed rigid multi-body and flexible body dynamics and control models and system designs for the 6-meter rotating instrument reflector-boom assembly (RBA) and flight system to confirm pointing and control performance, and devised strategies to efficiently implement on-orbit balancing if needed. Industry partners were selected for the spin mechanism assembly (SMA) and RBA. Preliminary designs for the radar and radiometer were initiated, including constructing breadboards of key assemblies.

Kellogg, Kent↗

Implementing Polar Projections with OGC Services for the Enhancement of AIRS NRT Visualization in LANCE

The Atmospheric Infrared Sounder (AIRS) NRT product is one important element in the Land, Atmosphere Near real-time Capability for EOS (LANCE). The LANCE processing of AIRS NRT products and the image generation are performed at the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). The Open Geospatial Consortium (OGC) services are being utilized to access AIRS NRT images. The ongoing AIRS NRT imagery enhancement work includes adding a new set of the images in polar projections. Polar projections are commonly used for mapping Antarctica and Arctic regions. We have implemented more precise south polar (EPSG:3031) projection and north polar (EPSG:3413) projection making our OGC service instances more useful and interoperable. Thus, AIRS NRT data can be easily accessed and integrated with other applications. It greatly increases the impact of our data on researches in polar regions.In this presentation, we will introduce the optimized processing workflow for OGC services from data access with spatial-temporal index to data visualization with different SLD, and demonstrate how to use open source software to provide more precise map images in polar projections.

Zhao, Peisheng↗

Using AUTORAD for Cassini File Uplinks: Incorporating Automated Commanding into Mission Operations

As the Cassini spacecraft embarked on the Solstice Mission in October 2010, the flight operations team faced a significant challenge in planning and executing the continuing tour of the Saturnian system. Faced with budget cuts that reduced the science and engineering staff by over a third in size, new and streamlined processes had to be developed to allow the Cassini mission to maintain a high level of science data return with a lower amount of available resources while still minimizing the risk. Automation was deemed an important key in enabling mission operations with reduced workforce and the Cassini flight team has made this goal a priority for the Solstice Mission. The operations team learned about a utility called AUTORAD which would give the flight operations team the ability to program selected command files for radiation up to seven days in advance and help minimize the need for off-shift support that could deplete available staffing during the prime shift hours. This paper will describe how AUTORAD is being utilized by the Cassini flight operations team and the processes that were developed or modified to ensure that proper oversight and verification is maintained in the generation and execution of radiated command files.

Goo, Sherwin↗

Quantifying element incorporation in multispecies biofilms using nanoscale secondary ion mass spectrometry image analysis

Elucidating nutrient exchange in microbial communities is an important step in understanding the relationships between microbial systems and global biogeochemical cycles, but these communities are complex and the interspecies interactions that occur within them are not well understood. Phototrophic consortia are useful and relevant experimental systems to investigate such interactions as they are not only prevalent in the environment, but some are cultivable in vitro and amenable to controlled scientific experimentation. Nanoscale secondary ion mass spectrometry (NanoSIMS) is a powerful, high spatial resolution tool capable of visualizing the metabolic activities of single cells within a biofilm, but quantitative analysis of the resulting data has typically been a manual process, resulting in a task that is both laborious and susceptible to human error. In this work, the authors describe the creation and application of a semiautomated image-processing pipeline that can analyze NanoSIMS-generated data, applied to phototrophic biofilms as an example. The tool employs an image analysis process, which includes both elemental and morphological segmentation, producing a final segmented image that allows for discrimination between autotrophic and heterotrophic biomass, the detection of individual cyanobacterial filaments and heterotrophic cells, the quantification of isotopic incorporation of individual heterotrophic cells, and calculation of relevant population statistics. The authors demonstrate the functionality of the tool by using it to analyze the uptake of 15 N provided as either nitrate or ammonium through the unicyanobacterial consortium UCC-O and imaged via NanoSIMS. The authors found that the degree of 15N incorporation by individual cells was highly variable when labeled with 15 NH 4 + , but much more even when biofilms were labeled with 15 NO 3 – . In the 15 NH 4 + -amended biofilms, the heterotrophic distribution of 15 N incorporation was highly skewed, with a large population showing moderate 15 N incorporation and a small number of organisms displaying very high 15 N uptake. The results showed that analysis of NanoSIMS data can be performed in a way that allows for quantitation of the elemental uptake of individual cells, a technique necessary for advancing research into the metabolic networks that exist within biofilms with statistical analyses that are supported by automated, user-friendly processes.

59 BASIC BIOLOGICAL SCIENCES↗

edxia: Microstructure characterisation from quantified SEM-EDS hypermaps

The characterisation of cement paste microstructure is an important step towards understanding durability mechanisms in cementitious materials. Scanning electron microscopy (SEM) coupled with energy dispersive spectroscopy (EDS) is a widely used technique to analyse the microstructure at the micron-scale. However, it is challenging, notably because the characteristic size of many phases is found on a scale smaller than the EDS interaction volume. This work presents a new image analysis framework to identify phases and quantify the microstructure of cementitious materials from SEM-EDS hypermaps. By leveraging domain knowledge, representative points are attributed to phases and mixtures of phases based on ratio plots. Then, quantitative analysis of the microstructure can be carried out (chemical composition, particle size distributions, volume fractions, …). We demonstrate the abilities of the framework, and we present possible applications and extensions of the method. The framework is available as both a graphical interface and a Python code.

36 MATERIALS SCIENCE↗