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At least 1,027 records · Page 57

Metal-olsalazine coordination polymers for medical applications

Olsalazine (H 4 olz), a prodrug of the anti-inflammatory 5-aminosalicylic acid, is used as a ligand to synthesize a suite of M(H 2 olz) and M 2 (olz) materials, where M is a dication (e.g. Mg, Ca, Sr, Fe, Co, Ni, Cu, Zn). A family of metal olsalazine coordination polymers, coordination solids, and metal organic frameworks are described, which include 1-, 2-, and 3-dimensional structures. The materials resist degradation at acidic pH and release olsalazine preferentially at neutral pH. The mesoporous M 2 (olz) frameworks exhibit high surface areas with hexagonal pore apertures that are approximately 27 Å in diameter and contain coordinatively unsaturated metal sites. Biologically active molecules containing a Lewis-basic functional group can be grafted directly to the open metal sites of the frameworks. Dissolution of the frameworks under physiological conditions releases olsalazine (H 4 olz) and the grafted molecules so that multiple therapeutic components can be delivered together at different rates.

Levine, Dana A.↗

Characterization of Multiple Trichloroethene, cis-Dichloroethene and 1,1-Dichloroethene Degrading Propanotrophic Communities

Aerobic cometabolism offers a viable strategy for the remediation of chlorinated solvent plumes at oxic sites where anaerobic approaches are limited. In this study, propane-enriched mixed cultures (derived from agricultural soils and an impacted site sediment) which previously degraded 1,4-dioxane, were evaluated for their capacity to also degrade trichloroethene (TCE), cis-1,2-dichloroethene (cDCE), and 1,1-dichloroethene (1,1-DCE) over successive transfers. Sustained biodegradation of TCE and cDCE was observed across multiple enrichments, and cultures enriched on one compound generally degraded the other. In contrast, 1,1-DCE biodegradation was restricted to a subset of cultures and removal times increased over transfers. Further, 1,1-DCE removal was absent at elevated concentrations, both trends consistent with inhibitory or toxic effects. Whole genome sequencing analyses revealed pronounced substrate-dependent selection of microbial communities, with cDCE-degrading cultures being dominated by Mycobacterium and Mycolicibacterium, whereas TCE-degrading cultures were dominated by Rhodococcus. Rhodococcus metagenome-assembled genomes (MAGs) in the TCE degrading cultures classified as R. opacus or R. wratislaviensis. 1,1-DCE degrading cultures were dominated by Pseudonocardia, although the associated MAGs contained a truncated propane monooxygenase alpha subunit. Functional gene analysis identified both group 5 (prmABCD) and putative group 6 propane monooxygenases. The following KBase narratives contain the quality controlled reads, MAGs (fasta assemblies) and the prokka annotations for each assembly TCE Site 1A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254918) TCE Soil 2A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254919) TCE Soil T3 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254920) TCE Soil T4 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254921) cDCE Site 1A 1B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254915) cDCE Soils T2 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254927) cDCE Soil T3 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254928) cDCE Soil 4A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254942) 1,1-DCE T2 T3 Propanotrophic MAGs (https://narrative.kbase.us/narrative/254903)

59 BASIC BIOLOGICAL SCIENCES↗

Effect of Carboxylic Acids on Corrosion of Type 410 Stainless Steel in Pyrolysis Bio-Oil

Biomass-derived oils are renewable fuel sources and commodity products and are proposed to partially or entirely replace fossil fuels in sectors generally considered difficult to decarbonize such as aviation and maritime propulsion. Bio-oils contain a range of organic compounds with varying functional groups which can lead to polarity-driven phase separation and corrosion of containment materials during processing and storage. Polar compounds, such as organic acids and other oxygenates, are abundant in bio-oils and are considered corrosive to structural alloys, particularly to those with a low-Cr content. To study the corrosion effects of small carboxylic acids present in pyrolysis bio-oils, type 410 stainless steel (SS410) specimens were exposed in bio-oils with varying formic, acetic, propionic and hexanoic acid contents at 50 °C during 48 h exposures. The specific mass change data show a linear increase in mass loss with increasing formic acid concentration. Interestingly, a mild corrosion inhibition effect on the corrosion of SS410 specimens was observed with the addition of acetic, propionic and hexanoic acids in the bio-oil.

09 BIOMASS FUELS↗

Nitrogen functionalized carbon black: A support for Pt nanoparticle catalysts with narrow size dispersion and high surface area

Amorphous carbon is widely used as a support for Pt nanoparticle catalysts. We show here that catalytic performance can be greatly improved by functionalizing the carbon support with a nitrogen-containing molecule, in conjunction with a new method for the in situ synthesis of nanocrystalline Pt. Vulcan® carbon black is covalently functionalized with 4-aminomethylpyridine (4AMP) via formation of an acid chloride on the surface followed by amidation. The resulting 4AMP-functionalized Vulcan® (4AMP-VC) was thoroughly characterized and shown to contain N at the surface of the Vulcan® carbon support. We note Pt nanoparticles grown on the 4AMP-VC have a smaller average size and much narrower size distribution than Pt nanoparticles grown on bare Vulcan® (VC). In addition, the Pt/4AMP-VC catalysts show higher catalytic activity and are more durable than their Pt/VC counterparts. We infer through careful analysis of X-ray photoelectron spectra that the Pt nanoparticles bind preferentially to the pyridinic nitrogen of the 4AMP.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural analysis of the intracellular domain of (pro)renin receptor fused to maltose-binding protein

Highlights: {yields} Crystal structure of the intracellular domain of (pro)renin receptor (PRR-IC) as MBP fusion protein at 2.0 A (maltose-free) and 2.15 A (maltose-bound). {yields} MBP fusion protein is a dimer in crystals in the presence and absence of maltose. {yields} PRR-IC domain is responsible for the dimerization of the fusion protein. {yields} Residues in the PRR-IC domain, particularly two tyrosines, dominate the intermolecular interactions, suggesting a role for the PRR-IC domain in PRR dimerization. -- Abstract: The (pro)renin receptor (PRR) is an important component of the renin-angiotensin system (RAS), which regulates blood pressure and cardiovascular function. The integral membrane protein PRR contains a large extracellular domain ({approx}310 amino acids), a single transmembrane domain ({approx}20 amino acids) and an intracellular domain ({approx}19 amino acids). Although short, the intracellular (IC) domain of the PRR has functionally important roles in a number of signal transduction pathways activated by (pro)renin binding. Meanwhile, together with the transmembrane domain and a small portion of the extracellular domain ({approx}30 amino acids), the IC domain is also involved in assembly of V{sub 0} portion of the vacuolar proton-translocating ATPase (V-ATPase). To better understand structural and multifunctional roles of the PRR-IC, we report the crystal structure of the PRR-IC domain as maltose-binding protein (MBP) fusion proteins at 2.0 A (maltose-free) and 2.15 A (maltose-bound). In the two separate crystal forms having significantly different unit-cell dimensions and molecular packing, MBP-PRR-IC fusion protein was found to be a dimer, which is different with the natural monomer of native MBP. The PRR-IC domain appears as a relatively flexible loop and is responsible for the dimerization of MBP fusion protein. Residues in the PRR-IC domain, particularly two tyrosines, dominate the intermonomer interactions, suggesting a role for the PRR-IC domain in protein oligomerization.

60 APPLIED LIFE SCIENCES↗

Design, development, fabrication and delivery of register and multiplexer units

Several approaches for implementing the register and multiplexer unit into two CMOS monolithic chip types were evaluated. The CMOS standard cell array technique was selected and implemented. Using this design automation technology, two LSI CMOS arrays were designed, fabricated, packaged, and tested for proper static, functional, and dynamic operation. One of the chip types, multiplexer register type 1, is fabricated on a 0.143 x 0.123 inch chip. It uses nine standard cell types for a total of 54 standard cells. This involves more than 350 transistors and has the functional equivalent of 111 gates. The second chip, multiplexer register type 2, is housed on a 0.12 x 0.12 inch die. It uses 13 standard cell types, for a total of 42 standard cells. It contains more than 300 transistors, the functional equivalent of 112 gates. All of the hermetically sealed units were initially screened for proper functional operation. The static leakage and the dynamic leakage were measured. Dynamic measurements were made and recorded. At 10 V, 14 megabit shifting rates were measured on multiplexer register type 1. At 5 V these units shifted data at a 6.6 MHz rate. The units were designed to operate over the 3 to 15 V operating range and over a temperature range of -55 to 125 C.

Feller, A.↗

Resolution of Disulfide Heterogeneity in Nogo Receptor 1 Fusion Proteins by Molecular Engineering

NgRI (Nogo-66 receptor) is part of a signalling complex that inhibits axon regeneration in the central nervous system. Truncated soluble versions of NgRI have been used successfully to promote axon regeneration in animal models of spinal-cord injury, raising interest in this protein as a potential therapeutic target. The LRR (leucine-rich repeat) regions in NgRI are flanked by N- and C-terminal disulfide-containing 'cap' domains (LRRNT and LRRCT respectively). In the present work we show that, although functionally active, the NgRI(310)-Fc fusion protein contains mislinked and heterogeneous disulfide patterns in the LRRCT domain, and we report the generation of a series of variant molecules specifically designed to prevent this heterogeneity. Using these variants we explored the effects of modifying the NgRI truncation site or the spacing between the NgRI and Fc domains, or replacing cysteines within the NgRI or IgG hinge regions. One variant, which incorporates replacements of Cys{sup 266} and Cys{sup 309} with alanine residues, completely eliminated disulfide scrambling while maintaining functional in vitro and in vivo efficacy. This modified NgRI-Fc molecule represents a significantly improved candidate for further pharmaceutical development, and may serve as a useful model for the optimization of other IgG fusion proteins made from LRR proteins.

59 BASIC BIOLOGICAL SCIENCES↗

Climate and hydraulic traits interact to set threshold for liana viability

This collection contains the datasets required to reproduce the analysis and figures for the publication titled "Climate and hydraulic traits interact to set thresholds for liana viability" by Willson et al. The CSV titled "extended_met_analysis_data_8_Feb.csv" contains the processed dataset from our extended meta-analysis of tropical tree and liana hydraulic traits. The CSV titled "filtered_TRY_analysis_16-03-21.csv" contains the processed dataset from our TRY analysis of functional traits of tropical trees and lianas. The zip file titled "TRY.zip" contains the raw data files downloaded from the TRY database, from which we derived our processed TRY dataset.

54 ENVIRONMENTAL SCIENCES↗

Interactions between monomeric CCTδ and p150Glued: A novel function for CCTδ at the cell periphery distinct from the protein folding activity of the molecular chaperone CCT

Highlights: • CCT function extends beyond the folding of actin and tubulin via the CCT oligomer. • Monomeric CCTδ binds to p150{sup Glued}, a component of the dynactin complex. • When CCTδ is over-expressed the plasma membrane moves inwards along microtubules. • The transmembrane protein dynAP is involved in CCTδ localization. • CCTδ monomers can influence cell migration, a function distinct from protein folding. Chaperonin containing tailless complex polypeptide 1 (CCT) is a molecular chaperone consisting of eight distinct protein subunits, that when oligomeric is essential for the folding of newly synthesized tubulin and actin. In addition to folding, CCT activity includes functions of individual subunits in their monomeric form. For example, when CCTδ monomer levels are increased in cultured mammalian cells, numerous cell surface protrusions are formed from retraction fibres, indicating that an underlying function for the CCTδ monomer exists. Here, using a yeast two-hybrid screen we identify the dynactin complex component p150{sup Glued} as a binding partner for CCTδ and show by siRNA depletion that this interaction is required for the formation of CCTδ-induced cell surface protrusions. Intact microtubules are necessary for the formation of the protrusions, consistent with microtubule minus end transport driving the retraction fibre formation and depletion of either p150{sup Glued} or the dynactin complex-associated transmembrane protein dynAP prevents the previously observed localization of GFP-CCTδ to the plasma membrane. Wound healing assays reveal that CCTδ monomer levels influence directional cell migration and together our observations demonstrate that in addition to the folding activity of CCT in its oligomer form, a monomeric subunit is associated with events that involve the assembled cytoskeleton.

60 APPLIED LIFE SCIENCES↗

Marf-mediated mitochondrial fusion is imperative for the development and functioning of indirect flight muscles (IFMs) in drosophila

Highlights: • Mitochondrial fusion is essential during development of Drosophila IFM. • Marf expression is required during early muscle development. • Marf knock down during IFM development affects mitochondrial shape and function. • Marf deficiency alters myofibril size and decreases muscle function. Dynamic changes in mitochondrial shape and size are vital for mitochondrial health and for tissue development and function. Adult Drosophila indirect flight muscles contain densely packed mitochondria. We show here that mitochondrial fusion is critical during early muscle development (in pupa) and that silencing of the outer mitochondrial membrane fusion gene, Marf, in muscles results in smaller mitochondria that are functionally defective. This leads to abnormal muscle development resulting in muscle dysfunction in adult flies. However, post-developmental silencing of Marf has no obvious effects on mitochondrial and muscle phenotype in adult flies, indicating the importance of mitochondrial fusion during early muscle development.

60 APPLIED LIFE SCIENCES↗

Atoms and interatomic bonding synergism inherent in molecular electronic wave functions

The chemical model of matter consists of atoms held together by bonds. The success of this model implies that the physical interactions of the electrons and nuclei in molecules combine into compound interactions that create the bonding. In the quantum mechanical description, the modified atoms in molecules and the bonding synergism are contained in the molecular electronic wave function. So far, only part of this information has been recovered from the wave function. Notably, the atoms have remained unidentified in the wave function. One reason is that conventional energy decomposition analyses formulate separate model wave functions, independent of the actual wave function, to represent “prepared atoms” and preconceived interactions and, then, intuitively catenate the parts. In the present work, the embedded modified atoms and the inherent physical synergisms between them are determined by a unified derivation entirely from the actual molecular valence space wave function. By means of a series of intrinsic orbital and configurational transformations of the wave function, the energy of formation of a molecule is additively resolved in terms of intra-atomic energy changes, interference energies, and quasi-classical, non-classical, and charge-transfer Coulombic interactions. Here, the analysis furnishes an algorithm for the quantitative resolution of the energy of formation, which enables analyses elucidating reaction energies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Dynamics of the chemo-optical response of supported films of nematic liquid crystals

We report a study that elucidates key physicochemical phenomena that underlie the dynamics of adsorbate-induced ordering transitions in micrometer-thick films of nematic liquid crystals (LCs) supported on chemically functionalized surfaces. By flowing a gas containing dimethyl methylphosphonate (DMMP) over a film of nematic 4-cyano-4'-pentylbiphenyl (5CB) supported on a surface decorated with aluminum perchlorate, we quantify the dynamics of the optical response (intensity of transmitted light) of the LC film as a function of key experimental parameters, including linear flow rate of the gas over the surface of the film and the concentration of the DMMP within the gas. Building from prior infrared spectroscopic analysis revealing that the optical response of the LC is due to an ordering transition triggered by competitive ligand-exchange reactions at the chemically functionalized surface (i.e., between the phosphonate and nitrile groups of the DMMP and LC, respectively, with the aluminum perchlorate-decorated surface), we interpret the measurements reported herein within the framework of a simple model of mass transport. The model reveals that the rate-limiting process underlying the response of the LC is the mass transport of the DMMP across the concentration boundary layer formed on the vapor side of the LC–vapor interface, and not the mass transport of DMMP across the LC film nor the intrinsic ligand exchange kinetics. The analysis also reveals that the response of the LC is triggered once the concentration of DMMP within the LC film rises to approximately 0.25 mM. By flowing a stream of gas free of DMMP over a LC film pre-exposed to DMMP, we established that the relaxation of the LC film to the initial state is also largely controlled by mass transport of the DMMP across the vapor side of the LC–vapor interface. Analysis of the relaxation of the system leads to an estimate of the sensitivity of the supported LC film to the concentration of DMMP in the gas phase (approximately 150 ppb for the non-optimized system reported in this paper). These results and others reported in this paper identify key physical phenomena that dictate the dynamics of adsorbate-induced ordering transitions in LC systems, and provide important guidance to the design of LCs as chemo-responsive materials for use in sensors.

dimethyl methylphosphonate↗

EMU Ventilation Loop Simulation and Assessment of Contamination of the EMU Sublimator Hydrophilic Coating

Controlling moisture is a critical function performed in the space suit during extra vehicular activity (EVA) missions. Currently, this function is carried out by a sublimator, which is coated with a hydrophilic material. Tests have shown that siloxane compounds can off gas from the helmet absorption pad extension (HAP-E) and helmet absorption band (HAB) when they are at elevated temperatures and initial testing indicated that siloxanes could damage the hydrophilic coating. Therefore, more representative testing was needed. Important test considerations were source and destination kinetics, system geometries, scrubbing efficacy by the activated charcoal from the Metox canister, and other benefits that derive from active condensation occurring on the hydrophilic coating during exposure. A ventilation loop that was originally constructed to test hardware for control of CO2 and trace contaminants under EVA conditions was modified to conduct the siloxane off gassing tests. A vacuum compatible acrylic chamber was installed to simulate the suit volume. A steel beaker located in the chamber contained the HAP-E and HAB materials and was heated with two band heaters. The flow exiting the chamber passed through a LiOH cannister, which contained carbon beds to simulate their function in the Metox. The flow then was directed into a smaller volume that contained a coupon, which was coated with the hydrophilic material and was maintained at 10°C (50°F). Moisture was injected upstream of the suit volume simulator to maintain the dew point between 12.7°C (55°F) and 18.3°C (65°F). The pressure was controlled to between 3.8 and 4.4 psia, and the flow was held at 6 acfm. The system was run for an equivalent of 25 ten-hour EVAs, where the HAP-E/HAB materials were changed out after each EVA. The effect of the potential off gassing on the coupon was measured after each EVA period.

PLSS↗

Versatile Synthesis of Amine-Reactive Microgels by Self-Assembly of Azlactone-Containing Block Copolymers

Relations between molecular design, chemical functionality, and stimulus-triggered response are important for a variety of applications of polymeric systems. In this paper, reactive amphiphilic block copolymers (BCPs) of poly(2-vinylpyridine)-block-poly(2-vinyl-4,4-dimethylazlactone) (PVP-b-PVDMA) were synthesized and assembled into microgels capable of incorporating functional amines. The composition of the PVP-b-PVDMA BCPs was varied to control the number of reactive sites in the spherical aggregates created by self-assembly of PVP-b-PVDMA BCPs in a 2-propanol/THF (v:v = 19:1) solvent mixture, which is selective for PVP. PVDMA and PVP segments were selectively cross-linked by 1,4-diaminobutane (DAB) or 1,4-diiodobutane (DIB) to fabricate core- and corona-cross-linked azlactone-containing microgels, respectively. Non-cross-linked aggregates of PVP-b-PVDMA and DIB-cross-linked microgels dissociate when exposed to THF, which is a good solvent for both blocks. However, the DAB-cross-linked BCP microgels swell in THF, suggesting the formation of a stable, three-dimensional network structure. Finally, because of their ability to be reactively modified in ways that allows their stability or disassembly characteristics to be tailored, these azlactone-containing BCP microgels provide an attractive platform for applications in a wide range of fields, including catalysis, imaging, molecule separation, and guest loading for targeted delivery.

36 MATERIALS SCIENCE↗

Stable fluorinated alkylated lithium malonatoborate salts for lithium-ion battery applications

The invention is directed in a first aspect to electrolyte salt of the general formula Li+Z−, wherein Z− has the following chemical formula: wherein R1 is an alkyl group (R′) containing at least one and up to twelve carbon atoms, and R2 and R3 are independently selected from fluorine atom, hydrocarbon groups R, alkoxy groups (—OR), and ester groups —OC(O)R, wherein R2 and R3 can optionally interconnect via R functionalities to form a boron-containing ring. The invention is also directed to electrolyte compositions in which the above electrolyte salt is incorporated. The invention is further directed to lithium-ion batteries containing these electrolytes.

Sun, Xiao-Guang↗

Quark sivers function at small x: spin-dependent odderon and the sub-eikonal evolution

We apply the formalism developed earlier for studying transverse momentum dependent parton distribution functions (TMDs) at small Bjorken x to construct the small- x asymptotics of the quark Sivers function. First, we explicitly construct the complete fundamental “polarized Wilson line” operator to sub-sub-eikonal order: this object can be used to study a variety of quark TMDs at small x . We then express the quark Sivers function in terms of dipole scattering amplitudes containing various components of the “polarized Wilson line” and show that the dominant (eikonal) term which contributes to the quark Sivers function at small x is the spin-dependent odderon, confirming the re- cent results of Dong, Zheng and Zhou. Our conclusion is also similar to the case of the gluon Sivers function derived by Boer, Echevarria, Mulders and Zhou. We also analyze the sub-eikonal corrections to the quark Sivers function using the constructed “polarized Wilson line” operator. We derive new small- x evolution equations re-summing double-logarithmic powers of α s ln 2 (1 /x ) with α s the strong coupling constant. We solve the corresponding novel evolution equations in the large- N c limit, obtaining a sub-eikonal correction to the spin-dependent odderon contribution. We conclude that the quark Sivers function at small x receives contributions from two terms and is given by ${f}_{1T}^{\perp q}\left(x,{k}_T^2\right)={C}_O\left(x,{k}_T^2\right)\frac{1}{x}+{C}_1\left({k}_T^2\right){\left(\frac{1}{x}\right)}^0+\cdots$ with the function C O ( x, ${k}_T^2$) varying slowly with x and the ellipsis denoting the subasymptotic and sub-sub-eikonal (order- x ) corrections.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Geometric and Electronic Properties of Graphene Modified by “External” N-Containing Groups

By means of the first-principles spin polarized density functional theory (DFT) calculations, we investigated structures and electronic properties of “external” nitrogen-containing groups (pyridine derivatives) modified graphene via single or double bonding mode. This study of single-bond pyridine derivatives modified graphene (SBPG) shows that the ortho-carbon is the most favorable adsorption site for pyridine derivatives on graphene, as confirmed by bader charge analysis. The external stability of pyridine derivatives on graphene by [2+2] cycloaddition is caused by the match between frontier orbitals of pyridine derivatives and those of graphene, which leading to the formation of stronger chemical bonds. Interestingly, electronic structure analysis reveals that the spin-up and spin-down parts DOS of SBPG clearly split, while it is not found for double-bonds pyridine derivatives modified graphene (DBPG). This work was supported by the 973 project (2013CB733501) and the National Natural Science Foundation of China ( 21101137, 21136001, 21176221, 21306169 and 91334013). D. Mei is supported by the US Department of Energy, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences & Biosciences. Pacific Northwest National Laboratory (PNNL) is a multiprogram national laboratory operated for DOE by Battelle.

electronic structure↗

Embedding Thiols into Choline Phosphate Polymer Zwitterions

Abstract The compositional scope of polymer zwitterions has grown significantly in recent years and now offers designer synthetic materials that are broadly applicable across numerous areas, including supracolloidal structures, electronic materials interfaces, and macromolecular therapeutics. Among recent developments in polymer zwitterion syntheses are those that allow insertion of reactive functionality directly into the zwitterionic moiety, yielding new monomer and polymer structures that hold potential for maximizing the impact of zwitterions on the macromolecular materials chemistry field. This manuscript describes the preparation of zwitterionic choline phosphate (CP) methacrylates containing either aromatic or aliphatic thiols embedded directly into the zwitterionic moiety. The polymerization of these functional CP methacrylates by reversible addition‐fragmentation chain‐transfer methodology yields polymeric zwitterionic thiols containing protected thiol functionality in the zwitterionic units. After polymerization, the protected thiols are liberated to yield thiol‐rich polymer zwitterions which serve as precursors to subsequent reactions that produce polymer networks as well as polymer‐protein bioconjugates.

Polymer Science↗