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At least 1,027 records · Page 57

Display Provides Pilots with Real-Time Sonic-Boom Information

Supersonic aircraft generate shock waves that move outward and extend to the ground. As a cone of pressurized air spreads across the landscape along the flight path, it creates a continuous sonic boom along the flight track. Several factors can influence sonic booms: weight, size, and shape of the aircraft; its altitude and flight path; and weather and atmospheric conditions. This technology allows pilots to control the impact of sonic booms. A software system displays the location and intensity of shock waves caused by supersonic aircraft. This technology can be integrated into cockpits or flight control rooms to help pilots minimize sonic boom impact in populated areas. The system processes vehicle and flight parameters as well as data regarding current atmospheric conditions. The display provides real-time information regarding sonic boom location and intensity, enabling pilots to make the necessary flight adjustments to control the timing and location of sonic booms. This technology can be used on current-generation supersonic aircraft, which generate loud sonic booms, as well as future- generation, low-boom aircraft, anticipated to be quiet enough for populated areas.

Haering, Ed↗

Remote Sensing of Lineage Functional Types for Modeling and Monitoring Biodiversity

Hyperspectral remote sensing has the potential to continuously scale plant function and plant diversity information from landscape to global extents. Numerous studies have indicated that VSWIR (400-2500 nm) reflectance properties of vegetation capture evolutionarily conserved biochemical, structural, and other functional attributes of plant species. Spectral properties conserved in plants provide the opportunity to both 1) aggregate species into lineages with improved classification accuracy and 2) link those lineages directly to plant traits. Full realization of this goal will enable parameterization of Land Surface Models (LSMs) with remotely sensed information, e.g., canopy nitrogen, and better representations of biodiversity and functional diversity in biogeographic studies. In this study, we use hyperspectral AVIRIS data from the 2013 HyspIRI campaign over the Southern Sierra Nevada, California flight box to investigate the potential for incorporating evolutionary thinking into landcover classification. We link the airborne hyperspectral data with vegetation plot data from roughly 1372 surveys and a phylogeny representing 1361 species. We aggregate species into lineages ranging from species level groups down to similar number of Plant Functional Types as often used in LSMs. We assessed the ability of Random Forest and Partial Least Squares Discriminant Analysis to discriminate across these different phylogenetic scales and determine the optimal number of lineages to classify. Although there are some temporal and spatial differences in our training data, our best approaches achieved moderate classification accuracy (Kappa > 0.65). Given an optimal number of lineages, we explored approaches to improve classifications including machine learning and unmixing approaches. This work suggests that lineage-based methods may be a promising way to leverage the huge amounts of data that will come from high resolution and high return interval hyperspectral data planned for the Surface Biology and Geology mission with sparsely sampled existing ground-based ecological data.

Hyperspectral↗

Metatranscriptomics analysis reveals a novel transcriptional and translational landscape during Middle East respiratory syndrome coronavirus infection

Among all RNA viruses, coronavirus RNA transcription is the most complex and involves a process termed “discontinuous transcription” that results in the production of a set of 3'-nested, co-terminal genomic and subgenomic RNAs during infection. While the expression of the classic canonical set of subgenomic RNAs depends on the recognition of a 6- to 7-nt transcription regulatory core sequence (TRS), here, we use deep sequence and metagenomics analysis strategies and show that the coronavirus transcriptome is even more vast and more complex than previously appreciated and involves the production of leader-containing transcripts that have canonical and noncanonical leader-body junctions. Moreover, by ribosome protection and proteomics analyses, we show that both positive- and negative-sense transcripts are translationally active. The data support the hypothesis that the coronavirus proteome is much vaster than previously noted in the literature.

59 BASIC BIOLOGICAL SCIENCES↗

An atlas of dynamic chromatin landscapes in mouse fetal development

The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes, methylomes and chromatin states. Here we systematically examined the state and accessibility of chromatin in the developing mouse fetus. In total we performed 1,128 chromatin immunoprecipitation with sequencing (ChIP–seq) assays for histone modifications and 132 assay for transposase-accessible chromatin using sequencing (ATAC–seq) assays for chromatin accessibility across 72 distinct tissue-stages. We used integrative analysis to develop a unified set of chromatin state annotations, infer the identities of dynamic enhancers and key transcriptional regulators, and characterize the relationship between chromatin state and accessibility during developmental gene regulation. We also leveraged these data to link enhancers to putative target genes and demonstrate tissue-specific enrichments of sequence variants associated with disease in humans. The mouse ENCODE data sets provide a compendium of resources for biomedical researchers and achieve, to our knowledge, the most comprehensive view of chromatin dynamics during mammalian fetal development to date.

59 BASIC BIOLOGICAL SCIENCES↗

Cybersecurity for the Operational Technology Environment (CyOTE) (Final Technical Report)

Electric grids have historically been susceptible to both physical attacks and environmental hazards but the implementation of smart grids, remote management, and self-healing networks, has now made the grid vulnerable to cyber attacks. To address risks introduced by routable connectivity, utilities must establish dynamic solutions to identify, protect, detect, respond to, and recover from cyber security threats and vulnerabilities. In response to the evolving threat landscape U.S. Department of Energy-Office of Cybersecurity, Energy Security, and Emergency Response (DOE CESER) initiated the Cybersecurity for the OT Environment (CyOTE) pilot program, a U.S. Department of Energy (DOE) effort designed to leverage U.S. intelligence capabilities to prevent, detect, or mitigate a cyber attack on utility operational technology (OT) networks. As part of the CyOTE pilot, The Southern Company (Southern Company or Southern) researched, evaluated and deployed emerging Commercial off the Shelf (COTS) technologies and cyber security monitoring architectures to provide previously unrealized network visibility and situational awareness through deep packet inspection and data analytics. This Final Scientific/Technical Report documents the objectives, methodology, lessons learned, and results of Southern Company’s participation in the CyOTE pilot from December 2018 to September 2023.

24 POWER TRANSMISSION AND DISTRIBUTION↗

California & Oregon Ecological Forecasting: Detecting and Forecasting Fog Occurrence, Frequency, and Change to Support Coast Redwood (Sequoia sempervirens) Habitat Assessments

Fog and low clouds play an important role in providing moisture to coastal ecosystems. Coast redwood (Sequoia sempervirens) forests are currently distributed along a narrow strip of coastline in California and Oregon and rely on the presence of marine fog for moisture availability during the dry season (June-October). Recent time series analyses presented an uncertain future of fog frequency; however, a decline in fog presence may have adverse effects on the coast redwood habitat. To support Save the Redwoods League, a non-profit organization dedicated to coast redwood forest management, the team analyzed hourly fog data from the Geospatial Operational Environmental Satellite 17 (GOES-17) Advanced Baseline Imager (ABI) and daily cloud cover data from the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra satellite. To explore present day fog longevity, GOES-17 was utilized to map the number of fog hours per day for the 2019 and 2020 dry seasons. The MODIS cloud flag was used to map the presence or absence of daily fog, which was summarized to create a monthly fog frequency dataset and identify trends in fog presence between 2000-2020. Both datasets were used as inputs into the random forest machine learning algorithm to identify climatic drivers of fog presence and longevity over the landscape. The present-day models suggested that daily temperature difference is a driving force behind fog presence and longevity. Trends in fog presence from 2000-2020 indicated great interannual variability. Finally, fog presence was modeled under a 2080 climate projection to shed light on the future of fog presence under a projected warmer climate. Model results projected an overall decline in fog presence during the dry season in the 2080s. Decreased fog presence as a result of increased temperature difference under a warmer climate remains to be a topic of investigation as to the impact on future redwood habitat suitability.

DEVELOP Project Summary↗

California & Oregon Ecological Forecasting: Detecting and Forecasting Fog Occurrence, Frequency, and Change to Inform Coast Redwood (Sequoia sempervirens) Habitat Assessments

Fog and low clouds play an important role in providing moisture to coastal ecosystems. Coast redwood (Sequoia sempervirens) forests are currently distributed along a narrow strip of coastline in California and Oregon and rely on the presence of marine fog for moisture availability during the dry season (June-October). Recent time series analyses presented an uncertain future of fog frequency; however, a decline in fog presence may have adverse effects on the coast redwood habitat. To complement ongoing work by Save the Redwoods League, a non-profit organization dedicated to coast redwood forest management, the team analyzed hourly fog data from the Geospatial Operational Environmental Satellite 17 (GOES-17) Advanced Baseline Imager (ABI) and daily cloud cover data from the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra satellite. To explore present day fog longevity, GOES-17 was utilized to map the number of fog hours per day for the 2019 and 2020 dry seasons. The MODIS cloud flag was used to map the presence or absence of daily fog, which was summarized to create a monthly fog frequency dataset and identify trends in fog presence between 2000-2020. Both datasets were used as inputs into the random forest machine learning algorithm to identify climatic drivers of fog presence and longevity over the landscape. The present-day models suggested that daily temperature difference is a driving force behind fog presence and longevity. Trends in fog presence from 2000-2020 indicated great interannual variability. Finally, fog presence was modeled under a 2080 climate projection to shed light on the future of fog presence under a projected warmer climate. Model results projected an overall decline in fog presence during the dry season in the 2080s. Decreased fog presence as a result of increased temperature difference under a warmer climate remains to be a topic of investigation as to the impact on future redwood habitat suitability.

DEVELOP Technical Paper↗

Grand Teton Ecological Forecasting: Assessing Forage Change and Winter Habitat Availability for Bighorn Sheep that Employ a High-Elevation Overwintering Strategy to Identify Areas for Intervention

Grand Teton National Park provides habitat for a small native population of approximately 125 bighorn sheep (Ovis canadensis). The reduction in population of this species is attributed to loss of low elevation habitat, changing local environmental and climatic conditions, and increased disturbance from backcountry recreation. In response to these changes, this population of sheep employs a unique high-elevation wintering strategy in which they amass large fat stores in the summer and expend as little energy as possible in the winter while foraging on high elevation wind-swept and snow-free areas. For this project, DEVELOP partnered with Grand Teton National Park and used NASA Earth observations including Landsat 8 Operational Land Imager (OLI), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 5 Thematic Mapper (TM), and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) snow cover data to assess habitat suitability. Landcover change analyzed between 1987 and 2020 indicated shifting trends in grass and forb cover and tree cover. These trends persisted in the 2031 prediction, with grass cover decreasing and tree cover increasing, which translates to a loss of overall favorable habitat for bighorn sheep. Snow cover analyzed between 2001 and 2020 indicated similar unfavorable trends for the sheep with a decrease in barren areas, important for winter foraging. Finally, habitat suitability was modeled for 2020 and predicted to 2031 to determine habitat gains and losses for this species across the landscape. Overall, the results predicted decreases in suitable habitat and indicated that while these sheep are highly adaptable, strategies to manage suitable bighorn habitat may need to be employed rapidly to effectively conserve this species.

Remote sensing↗

Deciphering the Spectra of Flowers to Map Landscape-scale Blooming Dynamics

Like leaves, floral coloration is driven by inherent optical properties, which are determined by pigments, scattering structure, and thickness. However, establishing the relative contribution of these factors to canopy spectral signals is usually limited to in-situ observations. Modeling flowering dynamics (e.g., blooming duration, spatial distribution) at the landscape scale may reveal insights into ecological processes and phenological adaptations to environmental changes. Multitemporal visible to shortwave infrared (VSWIR) imaging spectroscopy observations are especially suited for such efforts. Reflectance in this spectral range is sensitive to major flower pigments, flowering phenology traces, and biophysical differences between flowers and other plant parts. We explored how flowers contribute to spectral signals using a time series of imagery from the Airborne Visible InfraRed Imaging Spectrometer - Next Generation (AVIRIS-NG) collected as part of the SBG High-Frequency Time Series (SHIFT) campaign as a case study. Airborne data were collected weekly during the spring of 2022 across two natural reserves in California. Field spectra were gathered from blooming plots at leaf, flower, and canopy levels at two time points during the campaign. The processed data was used to investigate flowering species' spectro-temporal variation and spatial distribution using Spectral Mixture Residual, Gaussian clustering techniques, and a proposed narrow-band flowering index. Linear spectral unmixing allowed the computation of the weighted contribution of four major high-variance endmembers (leaves, flowers, soil, dark) and low-variance residual signal that comprises subtle spectral features used to track biophysical processes. The reflectance residual was projected on a low principal component basis to characterize flowering clusters' variation and spatial distribution based on the Gaussian mixture model, providing an uncertainty metric to assess the results. Mapping flowering events from modeling spectro-temporal dynamics throughout the season, from pre-blooming to post-flowering stages, allowed us to identify gradient variations in spectral features within the VSWIR spectral range linked to flowering pigments. Time series of the Mixture Residual Blooming Index and the Red-Edge Normalized Difference Vegetation Index revealed specific flowering and greenness phenophases across the two main species (Coreopsis gigantea, Artemisia californica) in the flowering areas. Overall, our approach opens opportunities for future satellite monitoring of floral cycles at broader scales.

Yoseline Angel↗

High-Resolution Measurement of Soil Thermal Properties and Moisture Content Using a Novel Heated Fiber Optics Approach

Hydrological parameters are scale dependent. Efficient monitoring techniques capable of measuring hydrological parameters, such as soil moisture content (θ), over a wide range of spatial scales are essential for understanding the complexity of water and energy movement across the landscape. Techniques to measure θ over spatial scales in the range from centimeters to thousands of meters, however, are sorely lacking. Recent improvements in the distributed temperature sensing (DTS) technology supported the development of novel techniques to fill that gap. However, improvements in the accuracy and applicability of DTS techniques are still needed. This study investigates the possibility of improving the accuracy of the fiber optics dual-probe heat-pulse (FO-DPHP) DTS technique by using a new design to maintain the spacing between the FO-DPHP probes and by introducing a novel data interpretation approach. The accuracy of the novel FO-DPHP design was tested at different θ in a sand column experiment. The FO-DPHP measurements obtained using traditional and novel data interpretation approaches were compared against independent measurements from several calibrated soil water content (EC5) sensors. Monte-Carlo analyses were also performed to assess the impact of DTS measurement errors on the accuracy achieved using the data interpretation approaches. The novel design and data interpretation approach allowed for accurate measurements of soil thermal properties and θ without the need to perform a hard-to-achieve soil-specific calibration. Measured θ had mean errors and standard deviations <0.03 and <0.01 m 3 m -3 , respectively, for moisture conditions ranging from dry to near saturation. The standard deviation in the measured heat capacity was <0.01 MJ m -3 K -1 .

42 ENGINEERING↗

SOX2-driven enhancer landscape defines the transcriptional architecture of retinogenesis

Retinal neurogenesis is mediated by the coordinated activities of a complex gene regulatory network (GRN) of transcription factors (TFs) in multipotent retinal progenitor cells (RPCs). How this GRN mechanistically guides neural competence remains poorly understood. In this study, we present integrated transcriptional, genetic and genomic analyses to uncover the regulatory mechanisms of SOX2, a key factor in establishing neural identity in RPCs. We show that SOX2 is preferentially enriched in the RPC-specific enhancer landscape associated with essential regulators of retinogenesis. Disruption of SOX2 expression impairs retinogenesis, marked by a selective loss of enhancer activity near genes essential for RPC proliferation and lineage specification. We identified the RPC transcription factor VSX2 as a binding partner for SOX2 and, together, SOX2 and VSX2 co-target a core, retina-specific chromatin repertoire characterized by enhanced TF binding and robust chromatin accessibility. This cooperative binding establishes a shared SOX2-VSX2 transcriptional code that promotes the expression of crucial regulators of neurogenesis while repressing the acquisition of alternative lineage cell fate. Our data illuminate fundamental biological insights on how transcription factors act in concert to drive chromatin-based genetic programs underlying retinal neural identity.

Chromatin↗

Long-Range Transhorizon Lunar Surface Radio Wave Propagation in the Presence of a Regolith and a Sparse Exospheric Plasma

Long-range, over-the-horizon (transhorizon) radio wave propagation is considered for the case of the Moon. In the event that relay satellites are not available or otherwise unwarranted for use, transhorizon communication provides for a contingency or backup option for non line-of-sight lunar surface exploration scenarios. Two potential low-frequency propagation mechanisms characteristic of the lunar landscape are the lunar regolith and the photoelectron induced plasma exosphere enveloping the Moon. Although it was hoped that the regolith would provide for a spherical waveguide which could support a trapped surface wave phenomena, it is found that, in most cases, the regolith is deleterious to long range radio wave propagation. However, the presence of the plasma of the lunar exosphere supports wave propagation and, in fact, surpasses the attenuation of the regolith. Given the models of the regolith and exosphere adopted here, it is recommended that a frequency of 1 MHz be considered for low rate data transmission along the lunar surface. It is also recommended that further research be done to capture the descriptive physics of the regolith and the exospheric plasma so that a more complete model can be obtained. This comprehensive theoretical study is based entirely on first principles and the mathematical techniques needed are developed as required; it is self-contained and should not require the use of outside resources for its understanding.

Manning, Robert M.↗

Statistics of base polytopes in F-theory

We propose a new statistical ensemble of toric bases for elliptic Calabi-Yaus used in F-theory models, by focusing on only the convex hull of the base, i.e., the base polytope. This physically motivated coarse-graining greatly simplifies the combinatorial complexity of the part of the 4d F-theory landscape with toric bases. We develop a Monte Carlo approach that randomly samples the base polytopes within fixed boxes, with proper statistical weights. We first apply the algorithm to the set of 2d base polytopes, generating an enlarged set of toric 2d bases that include certain types of codimension-two (4,6) points, and we validate our approach against exact numbers. We then explore the set of 3d base polytopes which fit in a set of “maximal” 3d boxes, and estimate the total number of inequivalent 3d base polytopes to be 10 85 –10 90 . We provide statistical data such as the distribution of non-Higgsable gauge groups on these bases. Amusingly, a similar method can also be applied to generate reflexive polytopes in various dimensions. In both the reflexive and base polytope cases, the number of relevant polytopes obeys a Gaussian distribution as a function of the number of vertices, which can be understood in terms of other results on random polytopes in the math literature.

Differential and algebraic geometry↗

Observing and modeling the effects of production infrastructure in electromagnetic surveys

Electromagnetic (EM) methods are among the original techniques for subsurface characterization in exploration geophysics because of their particular sensitivity to the earth electrical conductivity, a physical property of rocks distinct yet complementary to density, magnetization, and strength. However, this unique ability also makes them sensitive to metallic artifacts — infrastructure such as pipes, cables, and other forms of cultural clutter — the EM footprint of which often far exceeds their diminutive stature when compared to that of bulk rock itself. In the hunt for buried treasure or unexploded ordnance, this is an advantage; in the long-term monitoring of mature oil fields after decades of production, it is quite troublesome indeed. In this study we consider the latter through the lens of an evolving energy industry landscape in which the traditional methods of EM characterization for the exploration geophysicist are applied toward emergent problems in well-casing integrity, carbon capture and storage, and overall situational awareness in the oil field. We introduce case studies from these exemplars, showing how signals from metallic artifacts can dominate those from the target itself and impose significant burdens on the requisite simulation complexity. Furthermore, we show how recent advances in numerical methods mitigate the computational explosivity of infrastructure modeling, providing feasible and real-time analysis tools for the desktop geophysicist. Lastly, we demonstrate through comparison of field data and simulation results that incorporation of infrastructure into the analysis of such geophysical data is, in a growing number of cases, a requisite but now manageable step.

58 GEOSCIENCES↗

Commonwealth of the Northern Mariana Islands: 2023 Energy Baseline Report

This report summarizes the currently available energy sector data for the Commonwealth of the Northern Mariana Islands as of December 2023. It describes primary energy consumption, end uses, energy production, relevant policies, and key challenges, including details on the electric power and transportation sectors. The report serves as a baseline of understanding to assess CNMI's island-wide energy needs and priorities.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Mapping tree height in complex terrain of northern China using ultra-high-resolution images

Tree height is a key parameter for estimating forest biomass and carbon sequestration. In recent years, notable progress has been made in mapping tree height using satellite imagery. However, existing tree height products show low accuracy in mountainous and complex terrains, and few studies typically addressed tree height estimations in mountain areas. This study examines the Mentougou district of Beijing, China, characterized by complex terrain and mountainous landscapes. We analyzed two methods for estimating tree height: one using only spectral features and another combining spectral features with topographic factors (elevation, slope, aspect). We used 3-m resolution PlanetScope 8-band multispectral imagery, with 710 field-measured individual tree heights averaged to obtain 471 pixel-level tree height values as ground-truth, to develop tree height prediction models using eXtreme Gradient Boosting (XGBoost), Random Forest (RF), and Gradient Boosting Machine (GBM) models. The results show that the XGBoost model consistently presented the highest accuracy for both methods evaluated. Specifically, the XGBoost model that combined spectral data with elevation and slope variables with an R² of 0.75 and an RMSE of 2.69 m. Using the XGBoost model, we generated the tree height map for the Mentougou area at 3 m resolution, showing tree heights ranging from 0.5 to 30.4 m, and the model’s prediction error standard deviations ranged from 2.50 to 4.71 m, indicating reliable performance across varied terrain. Additionally, we compared and evaluated the global tree height products, identifying limitations in the accuracy within complex terrains. This study demonstrates the potential for accurately predicting tree heights by combining high-resolution multispectral satellites with a terrain factor modeling approach.

Complex terrain↗

Lattice vibrations and energy landscape of the isoelectronic semiconductor series CuBr, ZnSe, GaAs, and Ge: The special case of CuBr and its $\mathcal{d}$-level chemistry

Here we have examined the lattice vibrations and the energy landscape of the isoelectronic diamond and zincblende semiconductor series CuBr, ZnSe, GaAs, and Ge. Vibrations are found to be an increasing function of ionicity, with the cation sublattice always vibrating more strongly than the anion sublattice. These findings are consistent with density functional theory (DFT) calculations of the energy landscape and temperature-dependent molecular dynamics simulations of the atomic-position fluctuations. For CuBr, inclusion of the Cu 3d Hubbard U term is found necessary to stabilize the zincblende structure and to bring its vibrational amplitudes into agreement with experiment. In addition, vibrations are found to strongly affect the CuBr near-edge x-ray absorption fine structure that we have successfully modeled by including displacements in our theoretical Bethe-Salpeter equation calculations. Reverse Monte Carlo structural refinements using large atomic configurations to simultaneously fit x-ray absorption and x-ray total-scattering data support these conclusions, and they reveal strong Cu-Br first-neighbor correlations and asymmetric distributions of interatomic distances in the temperature ranges of both negative and positive thermal expansion. Delineation of the CuBr valence band photoelectron spectrum into its Cu 3d and Br 4p states uniquely reveals their covalent mixing and further supports the DFT results.

36 MATERIALS SCIENCE↗

Wind erosion in semiarid landscapes: Predictive models and remote sensing methods for the influence of vegetation

The objectives of this research are: to develop and test predictive relations for the quantitative influence of vegetation canopy structure on wind erosion of semiarid rangeland soils, and to develop remote sensing methods for measuring the canopy structural parameters that determine sheltering against wind erosion. The influence of canopy structure on wind erosion will be investigated by means of wind-tunnel and field experiments using structural variables identified by the wind-tunnel and field experiments using model roughness elements to simulate plant canopies. The canopy structural variables identified by the wind-tunnel and field experiments as important in determining vegetative sheltering against wind erosion will then be measured at a number of naturally vegetated field sites and compared with estimates of these variables derived from analysis of remotely sensed data.

Musick, H. Brad↗