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At least 1,027 records · Page 57

Structure sensitivity in oxide catalysis: First-principles kinetic Monte Carlo simulations for CO oxidation at RuO{sub 2}(111)

We present a density-functional theory based kinetic Monte Carlo study of CO oxidation at the (111) facet of RuO{sub 2}. We compare the detailed insight into elementary processes, steady-state surface coverages, and catalytic activity to equivalent published simulation data for the frequently studied RuO{sub 2}(110) facet. Qualitative differences are identified in virtually every aspect ranging from binding energetics over lateral interactions to the interplay of elementary processes at the different active sites. Nevertheless, particularly at technologically relevant elevated temperatures, near-ambient pressures and near-stoichiometric feeds both facets exhibit almost identical catalytic activity. These findings challenge the traditional definition of structure sensitivity based on macroscopically observable turnover frequencies and prompt scrutiny of the applicability of structure sensitivity classifications developed for metals to oxide catalysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A 1 km soil moisture dataset over eastern CONUS generated by assimilating SMAP data into the Noah-MP land surface model

An improved fine-scale soil moisture (SM) dataset at 1 km grid spacing, covering much of the eastern continental US, was generated by assimilating 9 km Soil Moisture Active Passive (SMAP) SM data into the v4.0.1 Noah-MP land surface model. With 12 ensemble members, the assimilation was carried out using the ensemble Kalman filter algorithm within NASA's Land Information System. The SM analysis for 2016 was fully validated against in situ observations from four different networks and compared with four other existing datasets. Results indicate that this SM analysis surpasses other datasets in top-layer SM distribution, including a machine-learning-based product, despite all SM estimates being less heterogeneous than observed. The analysis of anomalous errors suggests that large similarity in intrinsic errors is likely due to overlapping data sources among the selected SM datasets. More detailed evaluations were performed over two geographic areas. The observations collected by the Atmospheric Radiation Measurement facility in Oklahoma suggest that soil temperature and surface heat fluxes are concurrently simulated with good accuracy. Investigation into the 2016 southeastern US drought response further indicates drier conditions and higher evapotranspiration estimates compared to GLEAMv4.1. Notably, large errors are associated with grids having clay soil textures, underscoring the need for refined model treatments for specific soil types to further improve SM estimates. The dataset is publicly available on Zenodo at https://doi.org/10.5281/zenodo.14370563 (Tai et al., 2024).

Tai, Sheng-Lun [Pacific Northwest National Laborat↗

Effect of diosgenin on metabolic dysfunction: Role of ERβ in the regulation of PPARγ

The present study was designed to investigate the effect of diosgenin (DSG) on metabolic dysfunction and to elucidate the possible molecular mechanisms. High fat (HF) diet-fed mice and 3T3-L1 preadipocytes was used to evaluate the effect of DSG. We showed that DSG attenuated metabolic dysfunction in HF diet-fed mice, as evidenced by reduction of blood glucose level and improvement of glucose and insulin intolerance. DSG ameliorated oxidative stress, reduced body weight, fat pads, and systematic lipid profiles and attenuated lipid accumulation. DSG inhibited 3T3-L1 adipocyte differentiation and reduced adipocyte size through regulating key factors. DSG inhibited PPARγ and its target gene expression both in differentiated 3T3-L1 adipocytes and fat tissues in HF diet-fed mice. Overexpression of PPARγ suppressed DSG-inhibited adipocyte differentiation. DSG significantly increased nuclear expression of ERβ. Inhibition of ERβ significantly suppressed DSG-exerted suppression of adipocyte differentiation and PPARγ expression. In response to DSG stimulation, ERβ bound with RXRα and dissociated RXRα from PPARγ, leading to the reduction of transcriptional activity of PPARγ. These data provide new insight into the mechanisms underlying the inhibitory effect of DSG on adipocyte differentiation and demonstrate that ERβ-exerted regulation of PPARγ expression and activity is critical for DSG-inhibited adipocyte differentiation. - Highlights: • Diosgenin (DSG) attenuated metabolic dysfunction in high fat (HF) diet-fed mice. • DSG reduced oxidative stress and lipid accumulation in HF diet-fed mice. • DSG inhibited 3T3-L1 adipocyte differentiation and reduced adipocyte size. • DSG induced the binding of ERβ with RXRα. • DSG-induced activation of ERβ dissociated RXRα from PPARγ and reduced PPARγ activity.

60 APPLIED LIFE SCIENCES↗

Septin 7 reduces nonmuscle myosin IIA activity in the SNAP23 complex and hinders GLUT4 storage vesicle docking and fusion

Glomerular epithelial cells, podocytes, are insulin responsive and can develop insulin resistance. Here, we demonstrate that the small GTPase septin 7 forms a complex with nonmuscle myosin heavy chain IIA (NMHC-IIA; encoded by MYH9), a component of the nonmuscle myosin IIA (NM-IIA) hexameric complex. We observed that knockdown of NMHC-IIA decreases insulin-stimulated glucose uptake into podocytes. Both septin 7 and NM-IIA associate with SNAP23, a SNARE protein involved in GLUT4 storage vesicle (GSV) docking and fusion with the plasma membrane. We observed that insulin decreases the level of septin 7 and increases the activity of NM-IIA in the SNAP23 complex, as visualized by increased phosphorylation of myosin regulatory light chain. Also knockdown of septin 7 increases the activity of NM-IIA in the complex. The activity of NM-IIA is increased in diabetic rat glomeruli and cultured human podocytes exposed to macroalbuminuric sera from patients with type 1 diabetes. Collectively, the data suggest that the activity of NM-IIA in the SNAP23 complex plays a key role in insulin-stimulated glucose uptake into podocytes. Furthermore, we observed that septin 7 reduces the activity of NM-IIA in the SNAP23 complex and thereby hinders GSV docking and fusion with the plasma membrane. - Highlights: • Septin 7, nonmuscle myosin heavy chain IIA (NMHC-IIA) and SNAP23 form a complex. • Knockdown of septin 7 increases NM-IIA activity in the SNAP23 complex. • Insulin decreases septin 7 level and increases NM-IIA activity in the SNAP23 complex. • Septin 7 hinders GSV docking/fusion by reducing NM-IIA activity in the SNAP23 complex.

60 APPLIED LIFE SCIENCES↗

Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types

Background: Genes conferring antibiotic resistance to groups of bacterial pathogens are cause for considerable concern, as many once-reliable antibiotics continue to see a reduction in efficacy. The recent discovery of the metallo b-lactamase blaNDM-1 gene, which appears to grant antibiotic resistance to a variety of Enterobacteriaceae via a mobile plasmid, is one example of this distressing trend. The following work describes a computational analysis of pathogen-borne MBLs that focuses on the structural aspects of characterized proteins. Results: Using both sequence and structural analyses, we examine residues and structural features specific to various pathogen-borne MBL types. This analysis identifies a linker region within MBL-like folds that may act as a discriminating structural feature between these proteins, and specifically resistance-associated acquirable MBLs. Recently released crystal structures of the newly emerged NDM-1 protein were aligned against related MBL structures using a variety of global and local structural alignment methods, and the overall fold conformation is examined for structural conservation. Conservation appears to be present in most areas of the protein, yet is strikingly absent within a linker region, making NDM-1 unique with respect to a linker-based classification scheme. Variability analysis of the NDM-1 crystal structure highlights unique residues in key regions as well as identifying several characteristics shared with other transferable MBLs. Conclusions: A discriminating linker region identified in MBL proteins is highlighted and examined in the context of NDM-1 and primarily three other MBL types: IMP-1, VIM-2 and ccrA. The presence of an unusual linker region variant and uncommon amino acid composition at specific structurally important sites may help to explain the unusually broad kinetic profile of NDM-1 and may aid in directing research attention to areas of this protein, and possibly other MBLs, that may be targeted for inactivation or attenuation of enzymatic activity.

59 BASIC BIOLOGICAL SCIENCES↗

Transportation Energy: A Comparison Including and Excluding Upstream Energy

Thirty-eight editions of the Transportation Energy Data Book (Data Book) have been published since the report began in 1976. It was designed as a desk-top reference of statistics and information that characterize transportation activity. The most recent Data Book, edition 38, has 226 tables and 70 figures in the body of the report, with an additional 51 tables in appendices. One of the most-often used tables in the Data Book is referred to by the authors as “the big energy table.” It has transportation energy use in British thermal units (Btu) by mode and fuel type. The data are compiled from about 20 different sources and combined to create a detailed picture of transportation energy use. From the first edition to edition 35 of the Data Book, electricity use in the big energy table was converted from the original kilowatt-hours (kWh) to Btu using the net generation heat rate for fossil fuels. In those days, electricity was used mainly by transit rail. As electricity began to be used in the highway modes with consumer sales of electric vehicles, that process was revisited. Since energy use in the Data Book’s big energy table for all other fuels did not include the upstream energy to create the fuel, it seemed inconsistent to include upstream energy for generation of electricity. Beginning with edition 36, electricity use for the big energy table was converted from kilowatt hours to Btu using the heat content of electricity. Using heat content instead of net generation reduced electricity use data by about two-thirds. Feedback in recent years on the change in process for electricity led to an investigation of the differences in transportation energy use when adding estimates of upstream energy use to all the fuels used in transportation. This report documents the result of that effort.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Independent Technical Review of the Interim Measure Alternatives Analysis for Chromium Contamination in Groundwater at Los Alamos National Laboratory, New Mexico

The two example scenarios described in the report are built around either boundary condition modification or pump and treat. Boundary condition modification focuses primarily on aggressively reducing the driving force of water that is moving Cr(VI) through the subsurface system at LANL, carefully monitoring hydrologic responses, and quantifying natural attenuation rates in key portions of the plume. This scenario would provide a measurable impact on subsurface hydrology using relatively low-cost methods and emphasizing data collection to support the CME process. The second scenario focuses on active removal of Cr(VI) using pump and treat combined with a variety of data collection activities. This scenario would also include some boundary condition modification and would provide more timely impacts in the mid-plume area. However, it is substantially more costly and faces more significant logistical, regulatory, and data interpretation hurdles. Because of these issues and challenges, the pump and treat based scenario would be appropriate primarily for the case in which Cr(VI) removal and more rapid near-term impacts in the mid-plume are considered to be high, overriding priorities. We recommend careful consideration of the advantages and disadvantages of different “combined remedy” IM scenarios and urge the LANL team and its regulators and stakeholders to assemble and select a scenario that is implementable and that provides useful and actionable data to inform and support the CME. Both of the example scenarios presented meet these criteria.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Plateau Phenomenon in Gradient Descent Training of RELU Networks: Explanation, Quantification, and Avoidance

The ability of neural networks to provide ‘best in class’ approximation across a wide range of applications is well-documented. Nevertheless, the powerful expressivity of neural networks comes to naught if one is unable to effectively train (choose) the parameters defining the network. In general, neural networks are trained by gradient descent type optimization methods,a stochastic variant thereof. In practice, such methods result in the loss function decreases rapidly at the beginning of training but then, after a relatively small number of steps, significantly slow down. The loss may even appear to stagnate over the period of a large number of epochs, only to then suddenly start to decrease fast again for no apparent reason. This so-called plateau phenomenon manifests itself in many learning tasks. The present work aims to identify and quantify the root causes of plateau phenomenon.analysis is carried out in the setting of univariate ReLU networks. No assumptions are made on the number of neurons relative to the number of training data, and our results hold for both the lazy and adaptive regimes. Here, the main findings are: plateaux correspond to periods during which activation patterns remain constant, where activation pattern refers to the number of data points that activate a given neuron; quantification of convergence of the gradient flow dynamics; and, characterization stationary points in terms solutions of local least squares regression lines over subsets of the training data. Based on these conclusions, we propose a new iterative training method, the Active Neuron Least Squares (ANLS), characterised by the explicit adjustment of the activation pattern at each step, which is designed to enable a quick exit from a plateau. Illustrative numerical examples are included throughout.

97 MATHEMATICS AND COMPUTING↗

Qualification of Daiichi Units 1, 2, and 3 Data for Severe Accident Evaluations - Process and Illustrative Examples from Prior TMI-2 Evaluations

The accidents at the Three Mile Island Unit 2 (TMI-2) Pressurized Water Reactor (PWR) and the Daiichi Units 1, 2, and 3 Boiling Water Reactors (BWRs) provide unique opportunities to evaluate instrumentation exposed to severe accident conditions. Conditions associated with the release of coolant and the hydrogen burn that occurred during the TMI-2 accident exposed instrumentation to harsh conditions, including direct radiation, radioactive contamination, and high humidity with elevated temperatures and pressures. As part of a program initiated in 2012 by the Department of Energy Office of Nuclear Energy (DOE-NE), a review was completed to gain insights from prior TMI-2 sensor survivability and data qualification efforts. This initial review focused on the set of sensors deemed most important by post-TMI-2 instrumentation evaluation programs. Instrumentation evaluation programs focused on data required by TMI-2 operators to assess the condition of the reactor and containment and the effect of mitigating actions taken by these operators. In addition, prior efforts focused on sensors providing data required for subsequent forensic evaluations and accident simulations. To encourage the potential for similar activities to be completed for qualifying data from Daiichi Units 1, 2, and 3, this report provides additional details related to the formal process used to develop a qualified TMI-2 data base and presents data qualification details for three parameters: primary system pressure; containment building temperature; and containment pressure. As described within this report, sensor evaluations and data qualification required implementation of various processes, including comparisons with data from other sensors, analytical calculations, laboratory testing, and comparisons with sensors subjected to similar conditions in large-scale integral tests and with sensors that were similar in design to instruments easily removed from the TMI-2 plant for evaluations. As documented in this report, results from qualifying data for these parameters led to key insights related to TMI-2 accident progression. Hence, these selected examples illustrate the types of activities completed in the TMI-2 data qualification process and the importance of such a qualification effort. These details are documented in this report to facilitate implementation of similar process using data and examinations at the Daiichi Units 1, 2, and 3 reactors so that BWR-specific benefits can be obtained.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Data for Quantifying the Impact of Surfactants on Cloud Condensation Nuclei Activity Using a Particle-Resolved Model

This dataset contains simulation results from PartMC-MOSAIC and WRF-PartMC that used in the journal article: Quantifying the Impact of Surfactants on Cloud Condensation Nuclei Activity Using a Particle-Resolved Model. Two compressed folder are uploaded here, one is for the data that used in this article, the other folder is the python scripts to process the data. For more details of the uploaded files, please check the README file.

CCN↗

Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex

CRISPR-Cas systems provide adaptive immunity in bacteria and archaea, beginning with integration of foreign sequences into the host CRISPR genomic locus and followed by transcription and maturation of CRISPR RNAs (crRNAs). In some CRISPR systems, a reverse transcriptase (RT) fusion to the Cas1 integrase and Cas6 maturase creates a single protein that enables concerted sequence integration and crRNA production. To elucidate how the RT-integrase organizes distinct enzymatic activities, we present the cryo-EM structure of a Cas6-RT-Cas1—Cas2 CRISPR integrase complex. The structure reveals a heterohexamer in which the RT directly contacts the integrase and maturase domains, suggesting functional coordination between all three active sites. Together with biochemical experiments, our data support a model of sequential enzymatic activities that enable CRISPR sequence acquisition from RNA and DNA substrates. These findings highlight an expanded capacity of some CRISPR systems to acquire diverse sequences that direct CRISPR-mediated interference.

59 BASIC BIOLOGICAL SCIENCES↗

GIANT GAMMA-RAY BUBBLES FROM FERMI-LAT: ACTIVE GALACTIC NUCLEUS ACTIVITY OR BIPOLAR GALACTIC WIND?

Data from the Fermi-LAT reveal two large gamma-ray bubbles, extending 50{sup 0} above and below the Galactic center (GC), with a width of about 40{sup 0} in longitude. The gamma-ray emission associated with these bubbles has a significantly harder spectrum (dN/dE {approx} E {sup -2}) than the inverse Compton emission from electrons in the Galactic disk, or the gamma rays produced by the decay of pions from proton-interstellar medium collisions. There is no significant spatial variation in the spectrum or gamma-ray intensity within the bubbles, or between the north and south bubbles. The bubbles are spatially correlated with the hard-spectrum microwave excess known as the WMAP haze; the edges of the bubbles also line up with features in the ROSAT X-ray maps at 1.5-2 keV. We argue that these Galactic gamma-ray bubbles were most likely created by some large episode of energy injection in the GC, such as past accretion events onto the central massive black hole, or a nuclear starburst in the last {approx}10 Myr. Dark matter annihilation/decay seems unlikely to generate all the features of the bubbles and the associated signals in WMAP and ROSAT; the bubbles must be understood in order to use measurements of the diffuse gamma-ray emission in the inner Galaxy as a probe of dark matter physics. Study of the origin and evolution of the bubbles also has the potential to improve our understanding of recent energetic events in the inner Galaxy and the high-latitude cosmic ray population.

79 ASTRONOMY AND ASTROPHYSICS↗

Spurious solar-wind effects on acceleration noise in LISA Pathfinder

Spurious solar-wind effects are a potential noise source in future Laser Interferometer Space Antenna (LISA) measurements. One noise coupling mechanism is constrained by estimating solar-wind effects on acceleration noise in LISA Pathfinder (LPF). While LISA is designed for drag-free differential measurement, predicting the realistic impact both bounds the operational environment and assesses whether LISA could provide serendipitous space-weather observations. Data from NASA's Advanced Composition Explorer (ACE), situated at the L1 Lagrange point, serves as a reliable source of solar-wind data. The data sets are compared over the 114 d time period from 1 March 2016 to 23 June 2016. This period gives the longest readily-available open data set, without interference from other commissioning activities. To evaluate space weather effects, the data from both satellites are formatted, gap-filled/interpolated, and fast-Fourier transformed for amplitude spectral density and coherence comparisons. Solar wind effects are not seen in a coherence plot between LPF and ACE; modest coherence in the planned LISA observational frequency band can be attributed to chance. This result indicates that measurable correlation due to solar-wind acceleration noise over 3 month timescales will be a negligible noise source. LISA is unlikely to inform solar wind measurements routinely. Another source of noise from the Sun, solar radiation pressure, is estimated to impart greater acceleration noise, but has yet to be analyzed.

79 ASTRONOMY AND ASTROPHYSICS↗

THE MAYAK WORKER DOSIMETRY SYSTEM (MWDS-2013) FOR INTERNALLY DEPOSITED PLUTONIUM: AN OVERVIEW

The Mayak Worker Dosimetry System (MWDS-2013) is a system for interpreting measurement data from Mayak workers from both internal and external sources. This paper is concerned with the calculation of annual organ doses for Mayak workers exposed to plutonium aerosols, where the measurement data consists mainly of activity of plutonium in urine samples. The system utilises the latest biokinetic and dosimetric models, and unlike its predecessors, takes explicit account of uncertainties in both the measurement data and model parameters. The aim of this paper is to describe the complete MWDS-2013 system (including model parameter values and their uncertainties) and the methodology used (including all the relevant equations) and the assumptions made. Where necessary, supplementary papers which justify specific assumptions are cited.

Bayesian analysis' retrospective dosimetry↗

The Aerosol Modeling Testbed: A community tool to objectively evaluate aerosol process modules

This study describes a new modeling paradigm that significantly advances how the third activity is conducted while also fully exploiting data and findings from the first two activities. The Aerosol Modeling Testbed (AMT) is a computational framework for the atmospheric sciences community that streamlines the process of testing and evaluating aerosol process modules over a wide range of spatial and temporal scales. The AMT consists of a fully-coupled meteorology-chemistry-aerosol model, and a suite of tools to evaluate the performance of aerosol process modules via comparison with a wide range of field measurements. The philosophy of the AMT is to systematically and objectively evaluate aerosol process modules over local to regional spatial scales that are compatible with most field campaigns measurement strategies. The performance of new treatments can then be quantified and compared to existing treatments before they are incorporated into regional and global climate models. Since the AMT is a community tool, it also provides a means of enhancing collaboration and coordination among aerosol modelers.

54 ENVIRONMENTAL SCIENCES↗

Diagnosing Field Strengths and Plasma Conditions in Magnetically Insulated Transmission Lines Using Active Dopant Spectroscopy

Experimental validation data is needed to inform simulations of large pulsed power devices which are in development to understand and improve existing accelerators and inform future pulsed power capabilities. Using current spectroscopic techniques on the Z-machine, we have been unable to reliably diagnose plasma conditions and electric and magnetic fields within power flow regions. Laser ablation of a material produces a low density plasma, resulting in narrow spectroscopic line widths. By introducing a laser ablated plasma to the anode cathode gap of the Mykonos accelerator, we can monitor how the line shapes change due the current pulse by comparing these line shapes to spectral measurements taken without power flow. In this report we show several examples of measurements conducted on Mykonos on various dopant materials. We also show a negligible effect on power flow due to the presence of the ablation plasma for a range of parameters.

43 PARTICLE ACCELERATORS↗

FY22 Progress Report on BISON Metallic Fuel Model Development and V&V Using EBR-II Legacy Data

In this report, the activities and achievements made by Argonne National Laboratory for the Nuclear Energy Advanced Modeling and Simulation (NEAMS) BISON code metallic fuel validation and verification project in FY2022 are summarized. The FIPD-BISON integration powered metallic fuel low-burnup swelling framework has been enhanced to cover both radial and axial swelling analyses. Axial-dependent as-fabricated fuel radius profiles have been used to improve the accuracy in evaluating radial swelling strain. The simulations of the IFR experiment X447, which was focused on FCCI/CCCI induced cladding degradation and failure, have been converted into a BISON metallic fuel assessment case with detailed documentation, which is also the first FIPD-BISON integration powered assessment case in BISON. A FIPD-BISON integration repository has been established to be an optional submodule of BISON to support FIPD-BISON integration powered assessment cases. Preliminary trials to simulate the in-cell out-of-pile transient experiment have been made after implementing some essential models such as cladding plasticity models and liquid phase penetration models. The initial results are promising and help identify gaps that need to be filled in FY2023 and beyond, to eventually achieve OPTD-BISON integration powered assessment cases.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Embedded Filaments in IRAS 05463+2652: Early Stage of Fragmentation and Star Formation Activities

We present a multiwavelength data analysis of IRAS 05463+2652 (hereafter I05463+2652) to study star formation mechanisms. A shell-like structure around I05463+2652 is evident in the Herschel column density map, which is not associated with any ionized emission. Based on the Herschel submillimeter images, several parsec-scale filaments (including two elongated filaments, “s-fl” and “nw-fl” having lengths of ∼6.4 and ∼8.8 pc, respectively) are investigated in the I05463+2652 site. The Herschel temperature map depicts all these features in a temperature range of ∼11–13 K. 39 clumps are identified and have masses between ∼70--945 M{sub ⊙}. The majority of clumps (having M{sub clump}≳300 M{sub ⊙}) are distributed toward the shell-like structure. 175 young stellar objects (YSOs) are selected using the photometric 1–5 μm data and a majority of these YSOs are distributed toward the four areas of high column density (≳5×10{sup 21} cm{sup −2}; A {sub V} ∼ 5.3 mag) in the shell-like structure, where massive clumps and a spatial association with filament(s) are also observed. The knowledge of observed masses per unit length of elongated filaments and critical mass length reveals that they are supercritical. The filament “nw-fl” is fragmented into five clumps (having M{sub clump}∼100--545 M{sub ⊙}) and contains noticeable YSOs, while the other filament “s-fl” is fragmented into two clumps (having M{sub clump}∼170--215 M{sub ⊙}) without YSOs. Together, these observational results favor the role of filaments in the star formation process in I05480+2545. This study also reveals the filament “s-fl,” containing two starless clumps, at an early stage of fragmentation.

79 ASTRONOMY AND ASTROPHYSICS↗