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Transcriptomics and Proteomics Discussion

This presentation will cover the the basic pipelines for transcriptomics and proteomics that the GeneLab Analysis Working Groups (AWGs) have so far determined to be optimal. Basic transcriptomic pipelines will first be presented from primary analysis to higher-order systems analysis. Examples of how the data has been analyzed will be presented. Proteomics pipelines will also be presented compiled from various AWG members. Discussion will be generated from the AWG members to reach a consensus for each omic type.

Transcriptomics↗

SPACEFLIGHT ASSOCIATED NEURO-OCULAR SYNDROME (SANS): 2023 CLINICAL UPDATE

INTRODUCTION Spaceflight Associated Neuro-ocular Syndrome (SANS) is a condition unique to long-duration spaceflight, with an unclear pathogenesis and pathophysiology, and no perfect terrestrial analog. Approximately 66% of long duration spaceflight (LDSF) astronauts present with the earliest indication of SANS, which is defined as development of any of the following signs in at least one eye during or immediately following spaceflight: 1) optic disc edema (ODE; represented by an increase of ≥ 20 microns in peripapillary total retinal thickness [ΔTRT]); 2) chorioretinal folds; 3) globe flattening; and 4) excessive shift in refractive error (≥ +0.75D). Each of these signs presents potential risk to a crewmember’s vision and mission effectiveness, with ODE posing the highest risk overall. It is not yet known what severity and/or duration of these signs might lead to acute or permanent impacts to ocular anatomy or visual performance. Brain anatomical changes also occur during long-duration spaceflight and are being monitored in the astronaut population; however, these changes have not yet been associated with functional decrements or with SANS. An update will be provided on the latest SANS clinical analyses, diagnostics, and program initiatives. METHODS Data were obtained from clinical records and SANS subject matter experts (SMEs) to compile a SANS clinical update. Areas of interest include: 1) prevalence of SANS signs, 2) defining clinical thresholds for SANS, and 3) an overview of current and planned SANS clinical efforts. DISCUSSION SANS Sign Prevalence: Analysis at the time of this abstract submission indicates that the approximate prevalence of primary SANS findings in USOS LDSF crewmembers is: 64% for ODE (≥ 20-micron ΔTRT), 15% for chorioretinal folds, 26% for globe flattening, and 14% for hyperopic shifts in refractive error (≥ +0.75D). Clinical Thresholds:  The Earliest Indication of SANS was presented publicly for the first time at the 2020 NASA Human Research Program Investigators’ Workshop. See definition in Introduction section (above).  Clinically Concerning SANS – Development of any of the following signs during or immediately following spaceflight: 1) ODE (≥ 55-micron ΔTRT* and/or Frisèn grade ≥1*), 2) sharp chorioretinal folds in the vicinity of the macula, or 3) moderate globe flattening.  Pathological SANS with an Acute Functional Impact – Development of any of the following signs/symptoms during or immediately following spaceflight: 1) visual field loss (e.g., enlarged blindspot), 2) distorted centralvision, or 3) shift in refractive error beyond power of available correction (e.g., “space anticipation glasses”).  Pathological SANS affecting Long-Term Health – Development of any of the following signs/symptoms during or following spaceflight: 1) permanent visual field loss, 2) reduced retinal nerve fiber layer (RNFL) thickness, 3) permanently distorted central vision, 4) atrophy of retinal pigment epithelium (RPE) or photoreceptors, or 5) choroidal neovascularization. Current & Planned Clinical Efforts (accurate at time of abstract submission): All SANS diagnostic hardware are performing nominally onboard the International Space Station: vision screening, fundoscope, optical coherence tomography (OCT) device, ultrasound, and tonometer. The Goggle-Based Visual Field (GBVF) device is nearing completion of its clinical validation study at Ohio State University and is planned for parabolic flight testing in fiscal year 2023 (FY23); pending positive results, this sequence may pave the way towards an ISS technology demonstration in FY24.

T J Brunstetter↗

Reanalysis of Rat Data from Spacelab Life Sciences 2 (SLS-2) to Reveal Research Gaps in Spaceflight Data

Using and analyzing the legacy data obtained in space life sciences missions has the potential to provide researchers a complete picture of the molecular changes associated with space without further experimentation. This project’s objective is to extract, filter, organize, and analyze all Rattus norvegicus data and metadata obtained from Columbia’s Spacelab Life Sciences 2 (SLS-2, STS-58) mission to explore the ways that we can compile information from model organisms, in our case rats, to create a reliable model to understand biological mechanisms in response to these space flight changes. By reusing rare space legacy data coupled with data analysis techniques, we can combine individual preexisting datasets with current ones to gain new, comprehensive insights about the effects of spaceflight on our bodies. Our methods can also lead to the creation of a standardized pipeline that could be applied to other space life science datasets for analysis. In this review, every biological experiment conducted on rats in the SLS-2 Mission was studied with our pipeline to create a new biological library and model that could be used by scientists from around the world to make novel discoveries and develop new hypotheses from this priceless information without the limitation of the costs of spaceflight experimentation.

rats↗

An Upgrade of the Imaging for Hypersonic Experimental Aeroheating Testing (IHEAT) Software

The Imaging for Hypersonic Experimental Aeroheating Testing (IHEAT) code is used at NASA Langley Research Center to analyze global aeroheating data on wind tunnel models tested in the Langley Aerothermodynamics Laboratory. One-dimensional, semi-infinite heating data derived from IHEAT are used to design thermal protection systems to mitigate the risks due to the aeroheating loads on hypersonic vehicles, such as re-entry vehicles during descent and landing procedures. This code was originally written in the PV-WAVE programming language to analyze phosphor thermography data from the two-color, relativeintensity system developed at Langley. To increase the efficiency, functionality, and reliability of IHEAT, the code was migrated to MATLAB syntax and compiled as a stand-alone executable file labeled version 4.0. New features of IHEAT 4.0 include the options to batch process all of the data from a wind tunnel run, to map the two-dimensional heating distribution to a three-dimensional computer-aided design model of the vehicle to be viewed in Tecplot, and to extract data from a segmented line that follows an interesting feature in the data. Results from IHEAT 4.0 were compared on a pixel level to the output images from the legacy code to validate the program. The differences between the two codes were on the order of 10-5 to 10-7. IHEAT 4.0 replaces the PV-WAVE version as the production code for aeroheating experiments conducted in the hypersonic facilities at NASA Langley.

Mason, Michelle L.↗

A Compilation of Space Shuttle Sonic Boom Measurements - Supplemental STS Sonic Boom Files

Supplemental STS Sonic Boom Files for NASA/CR-2011-217080. Data files included on CDROM formatted to ISO 9660 standards. Sonic boom measurements have been obtained on 26 flights of the Space Shuttle system beginning with the launch of STS-1 on April 12, 1981, to the reentry-descent of STS-41 into EAFB on Oct. 10, 1990. A total of 23 boom measurements were acquired within the focus region off the Florida coast during 3 STS launch-ascents and 113 boom measurements were acquired during 23 STS reentry-descent to landing into Florida and California. Sonic boom measurements were made under, and lateral to, the vehicle ground track and cover the Mach-altitude range of about 1.3 to 23 and 54,000 feet to 243,000 feet, respectively. Vehicle operational data, flight profiles and weather data were also gathered during the flights. This STS boom database is contained in 26 documents, some are formal and referenceable but most internal documents. Another 38 documents, also non-referenceable, contain predicted sonic boom footprints for reentry-descent flights on which no measurements were made. The purpose of this report is to provide an overview of the STS sonic boom database and summarize the main findings.

Maglieri, Domenic J.↗

Space Tug avionics definition study. Volume 1: Executive summary

A top down approach was used to identify, compile, and develop avionics functional requirements for all flight and ground operational phases. Such requirements as safety mission critical functions and criteria, minimum redundancy levels, software memory sizing, power for tug and payload, data transfer between payload, tug, shuttle, and ground were established. Those functional requirements that related to avionics support of a particular function were compiled together under that support function heading. This unique approach provided both organizational efficiency and traceability back to the applicable operational phase and event. Each functional requirement was then allocated to the appropriate subsystems and its particular characteristics were quantified.

Source record↗

Map accuracy requirements: The cartographic potential of satellite image data

Cartographic products fall into a variety of classes: topographic maps that are concerned with planimetric information and elevations or heights; thematic maps, which might be used for geology, vegetation, water, or to display these subjects; digital elevation maps that would be produced from digital terrain data; and finally image maps. In terms of satellite applications, thematic maps and image maps are emphasized. The objectives are to consider, first, if resolution will be adequate for the identification of control and for the compilation of map products. Then, second, to define map accuracy standards and to determine the potential for meeting these standards with image data from the film camera, scanner and linear array systems of the 1980s.

Welch, R.↗

Upward appraisal as a means for improving supervisory performance and promoting process improvement, with long-term implications for organizational change

This study represents the implementation phase of an organizational development project which was initiated last year in the Management Support Division (MSD) at Langley Research Center to diagnose organizational functioning. As a result of MSD survey data from last year's effort, a Quality Action Team was created to address the responses compiled from the MSD Organizational Assessment Questionnaire and Follow-Up Questionnaire. The team was officially named the MSD Employee Relations Improvement Team (MERIT). MERIT's goal was to analyze major concerns generated by the questionnaires and to present feasible solutions to management which would improve supervisory performance, promote process improvement; and ultimately, lead to a better organization. The team met weekly and was very disciplined in following guidelines needed to ensure a fully functioning team. Several TQM tools were used during the team process, including brainstorming and the cause and effect diagram. One of the products produced by MERIT was a 'report card', more formally known as an upward appraisal system, to evaluate supervisory performance in the division office, its three branches, and in teams. Major areas of emphasis on the 47 item report card were those identified by employees through the previously administered questionnaires as needing to be improved; specifically, training, recognition, teamwork, supervision and leadership, and communication. MERIT created an enlarged and modified version of the report card which enabled scores for each individual supervisor to be recorded on a separate form, along with summary results and employee comments. Report card results have been compiled and fed back to the Division Chief and Assistant Division Chief. These individuals will in turn, feed the results back to the remaining supervisors and the team leaders. Although results differ among supervisors, some similarities exist. Communication generally appears to be adequate, which represents an improvement over last year. In contrast, recognition and teamwork are the two major areas where improvement in supervisory performance seems to be most needed. The initial report card results will serve as a baseline against which future performance ratings will be compared. Once supervisors have been presented with their data and given an opportunity to analyze and discus the results, they will be assisted in developing an action plan for improving their performance and work processes. They will be provided with ongoing support from management in following through with the action plan.

Siegfeldt, Denise V.↗

By Hand or Not By-Hand: A Case Study of Alternative Approaches to Parallelize CFD Applications

While parallel processing promises to speed up applications by several orders of magnitude, the performance achieved still depends upon several factors, including the multiprocessor architecture, system software, data distribution and alignment, as well as the methods used for partitioning the application and mapping its components onto the architecture. The existence of the Gorden Bell Prize given out at Supercomputing every year suggests that while good performance can be attained for real applications on general purpose multiprocessors, the large investment in man-power and time still has to be repeated for each application-machine combination. As applications and machine architectures become more complex, the cost and time-delays for obtaining performance by hand will become prohibitive. Computer users today can turn to three possible avenues for help: parallel libraries, parallel languages and compilers, interactive parallelization tools. The success of these methodologies, in turn, depends on proper application of data dependency analysis, program structure recognition and transformation, performance prediction as well as exploitation of user supplied knowledge. NASA has been developing multidisciplinary applications on highly parallel architectures under the High Performance Computing and Communications Program. Over the past six years, the transition of underlying hardware and system software have forced the scientists to spend a large effort to migrate and recede their applications. Various attempts to exploit software tools to automate the parallelization process have not produced favorable results. In this paper, we report our most recent experience with CAPTOOL, a package developed at Greenwich University. We have chosen CAPTOOL for three reasons: 1. CAPTOOL accepts a FORTRAN 77 program as input. This suggests its potential applicability to a large collection of legacy codes currently in use. 2. CAPTOOL employs domain decomposition to obtain parallelism. Although the fact that not all kinds of parallelism are handled may seem unappealing, many NASA applications in computational aerosciences as well as earth and space sciences are amenable to domain decomposition. 3. CAPTOOL generates code for a large variety of environments employed across NASA centers: MPI/PVM on network of workstations to the IBS/SP2 and CRAY/T3D.

Yan, Jerry C.↗

Thermophysical properties of helium-4 from 4 to 3000 R with pressures to 15000 psia

Data on many of the properties of helium commonly used in engineering calculations are compiled over as wide a temperature and pressure range as is practical. These properties are presented in a form which is convenient to the engineer. All of these properties have been critically evaluated and represent the best values for that property at this time.

Mccarty, R. D.↗

Life sciences payload definition and integration study. Volume 2: Requirements, design, and planning studies for the carry-on laboratories

The task phase concerned with the requirements, design, and planning studies for the carry-on laboratory (COL) began with a definition of biomedical research areas and candidate research equipment, and then went on to develop conceptual layouts for COL which were each evaluated in order to arrive at a final conceptual design. Each step in this design/evaluation process concerned itself with man/systems integration research and hardware, and life support and protective systems research and equipment selection. COL integration studies were also conducted and include attention to electrical power and data management requirements, operational considerations, and shuttle/Spacelab interface specifications. A COL program schedule was compiled, and a cost analysis was finalized which takes into account work breakdown, annual funding, and cost reduction guidelines.

Source record↗

Aviation turbine fuel properties and their trends

Fuel property values and their trends were studied through a review of a recognized, wide ranging sample population from actual fuel inspection data. A total of 676 fuel samples of Jet A aviation turbine fuel were compiled over an eleven year period. Results indicate that most fuel samples have one to three near-specification properties, the most common being aromatics, smoke point, and freezing point.

Friedman, R.↗

On self-preserving, variable-density, turbulent free jets

Published experimental data on incompressible, compresible, free binary, and confined binary turbulent axisymmetric jet flows are compiled and characterized, and the effect of varying turbulent diffusivity across the mixing region of a free jet is investigated analytically, applying the similarity-solution approach of So and Hwang (1986) to the self-preserving region. It is shown that closed-form solutions, represented by Gaussian error functions and having the turbulent Reynolds number and a profile-shape factor as free parameters, can be obtained if the turbulent diffusivities of momentum, mass, or heat are assumed to be different and to vary in both the streamwise and radial directions. An entrainment function uniquely related to the turbulent Reynolds number is derived, and good agreement between theoretical predictions and experimental measurements is demonstrated in graphs.

So, R. M. C.↗

Orbital period changes in massive X-ray binaries

Data from long-term pulse-timing observations of Cen X-3 are compiled and analyzed to determine the evolution of the orbital period, and the implications of the results for other massive X-ray binaries are discussed. Third-body effects, tidal effects, and mass-loss/transfer effects are considered as possible causes for the orbital-period decay observed in Cen X-3, and it is concluded that strong tidal coupling between the companion star and the orbital causes the period decay via orbital instability and/or mass loss. Applying these results to the Roche-lobe-overflow models of Savonije (1983), the evolutionary expansion rate of the Cen X-3 companion and the Roche-lobe shrinking rate are estimated as about 2 x 10 to the -7th/yr and about 1 x 10 to the -6th/yr, respectively, implying an X-ray lifetime of about 5000 yr. Estimates of the companion mass-change rate and period decay for Cen X-3 and four other objects are presented in a table.

Kelley, Richard L.↗

Nd isotopes and crustal growth rate

Sm/Nd isotopic constraints on crustal growth is discussed. In order to constrain Sm/Nd fractionation between continental crust and depleted mantle, an extensive data base of isotopic measurements (assumed to be adequately representative of continental crust) was compiled. The results imply that the evolution of depleted mantles was roughly linear, with no major discontinuities over the course of geologic time. This is different from other determinations of depleting mantle evolution, which show nonlinear behavior. The Sm/Nd evolution lines for continental crust and depleted mantle intersect between 3.8 to 4.0 Ga, which may indicate that the onset of continental growth was later than 4.5 Ga. A mathematical model is described, the results of which imply that time integrated crustal additions from the mantle are about 1.8 to 2.5 cu km/a, whereas crustal subtractions by sediment recycling are about 0.6 to 1.5 cu km/a. This results in a net time integrated crustal growth rate of about 1 cu km/a, which is similar to present day rates determined, for example, by Reymer and Schubert.

Albarede, F.↗

Formation of crater palimpsests on Ganymede

A model is presented for the mechanism of the formation of crater palimpsests (circular features of very little relief) on Ganymede, that resolves some of the inconsistencies present in previous hypotheses of the palimpsest formation. It is suggested that palimpsest formation may be a result of cratering during a period of vigorous convection within the satellite early in the Ganymede's history. The morphology of palimpsests is reviewed and an updated compilation of palimpsests distribution and dimensions is obtained on the basis of final Voyager data. Calculations are performed that show that palimpsest formation is expected when large impacts take place in an icy lithosphere that is underlain by a zone of warm buoyant vigorously convecting material. The implications of the model for the thermal history of Ganymede is discussed.

Thomas, Paul J.↗

Frequencies of solar oscillations

Solar oscillations have been observed at three different spatial scales at Big Bear Solar Observatory during 1986-1987 and, using three data sets, a new and more accurate table of solar oscillation frequencies has been compiled. The oscillations, which are presented as functions of radial order n and spherical harmonic degree l, are averages over azimuthal order and therefore approximate the normal mode frequencies of a nonrotating, spherically symmetric sun, near solar minimum. The table contains frequencies for most of the solar p and f modes with l between 0 and 1860, n between 0 and 26, and oscillation mode frequencies between 1.0 and 5.3.

Libbrecht, K. G.↗