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At least 1,009 records · Page 56

Latitudinal gradient in the respiration quotient and the implications for ocean oxygen availability

Significance The loss of ocean oxygen caused by climate warming is a serious environmental issue and could lead to major declines in animal habitats. However, current Earth system models struggle in explaining observed trends in global ocean oxygen. Using a model, we demonstrate that marine oxygen concentrations depend sensitively on a rarely considered quantity known as the respiration quotient to prescribe the oxygen consumed per mole of organic carbon respired. Using a combination of direct chemical measurements across major biomes in the eastern Pacific Ocean plus changes in the global distribution of oxygen and carbon, we show how the respiration quotient increases systematically with temperature. The findings imply that we can experience more intense declines in ocean oxygen with warming.

54 ENVIRONMENTAL SCIENCES↗

TIME-DEPENDENT, COMPOSITIONALLY DRIVEN CONVECTION IN THE OCEANS OF ACCRETING NEUTRON STARS

We discuss the effect of convection driven by chemical separation at the ocean-crust boundary of accreting neutron stars. We extend the steady-state results of Medin and Cumming to transient accretors, by considering the time-dependent cases of heating during accretion outbursts and cooling during quiescence. During accretion outbursts, inward heat transport has only a small effect on the temperature profile in the outer layers until the ocean is strongly enriched in light elements, a process that takes hundreds of years to complete. During quiescence, however, inward heat transport rapidly cools the outer layers of the ocean while keeping the inner layers hot. We find that this leads to a sharp drop in surface emission at around a week followed by a gradual recovery as cooling becomes dominated by the crust. Such a dip should be observable in the light curves of these neutron star transients, if enough data is taken at a few days to a month after the end of accretion. If such a dip is definitively observed, it will provide strong constraints on the chemical composition of the ocean and outer crust.

79 ASTRONOMY AND ASTROPHYSICS↗

Role of ocean coupling in the weakening of the extratropical storm tracks from Arctic sea ice loss

Abstract Within the changing climate, the Northern Hemisphere storm tracks have been projected to shift poleward and expand eastward. Changes in the Northern Hemisphere storm tracks arise from a variety of sometimes competing effects on the region's baroclinicity. Arctic amplification weakens the meridional temperature gradient, hence weakening the storm track, while low-latitude warming has the opposite effect, and surface-amplified warming at high latitudes reduces static stability. To determine the mechanisms driving these competing changes, we use a hierarchy of models with different levels of ocean-atmosphere coupling, using forcings from the Polar Amplification Model Intercomparison Project (PAMIP) to assess the role of Arctic sea ice loss on the Northern Hemisphere storm tracks. We find that ocean-atmosphere coupling enhances and sharpens the weakening of both the North Atlantic and North Pacific storm tracks in response to Arctic sea ice loss, that surface turbulent heat flux modulates the intensity of the weakening, and that local ocean dynamics controls the meridional location of the response. A moist isentropic diagnostic of the atmospheric overturning circulation shows that most of the weakening of the storm tracks and its associated changes in atmospheric heat transport (AHT) arise from a weakening of the transient eddy mass flux. Poleward of the storm tracks, the AHT also decreases, but through weakened effective stratification rather than weakening mass fluxes, an effect which occurs even in the absence of ocean dynamical coupling.

Audette, Alexandre (ORCID:0000000163321088)↗

Viroid-like “obelisk” agents are widespread in the ocean and exceed the abundance of RNA viruses in the prokaryotic fraction

Abstract “Obelisks” are recently discovered ribonucleic acid (RNA) viroid-like elements present in diverse environments with no phylogenetic similarity to any known biological agent. obelisks were first identified in the human gut and in a commensal bacterium acting as a replicative host. They have a circular ∼1 kb RNA genome, rod-like secondary structures, and the encoding of a protein superfamily called “Oblins”. We performed a large-scale search of obelisks in the ocean using the Pebblescout program and the transcriptomic Sequence Archive Read databases, revealing the biogeography and abundance of these viroid-like RNA elements. We detected 55 obelisk genomes resulting in 35 marine clusters at the species level. These obelisks were detected in the prokaryotic fraction and to a lesser extent in the eukaryotic fraction, and distributed across all the oceans from surface to mesopelagic including the Arctic, and even in the coldest seawater of Earth beneath the Antarctic Ross Ice Shelf. The obelisk hallmark protein Oblin-1 confirmed by 3D models was found in various marine samples. Some of the detected marine obelisks harbor hammerhead self-cleaving ribozymes in both polarities. In the prokaryotic, but not the eukaryotic, fraction of the Tara Ocean dataset, relative abundance of obelisks calculated by transcriptomic fragment recruitment indicated that they are abundant in marine samples, reaching or even exceeding the relative abundance of the previously discovered uncultured RNA viruses. In conclusion, obelisks are abundant and widespread viroid-like elements that should be included in ocean biogeochemical models.

Environmental Sciences & Ecology↗

Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean

Viruses can alter the abundance, evolution, and metabolism of microorganisms in the ocean, playing a key role in water column biogeochemistry and global carbon cycles. Large efforts to measure the contribution of eukaryotic microorganisms (e.g., protists) to the marine food web have been made, yet the in situ activities of the ecologically relevant viruses that infect these organisms are not well characterized. Viruses within the phylum Nucleocytoviricota (“giant viruses”) are known to infect a diverse range of ecologically relevant marine protists, yet how these viruses are influenced by environmental conditions remains under-characterized. By employing metatranscriptomic analyses of in situ microbial communities along a temporal and depthresolved gradient, we describe the diversity of giant viruses at the Southern Ocean Time Series (SOTS), a site within the subpolar Southern Ocean. Using a phylogeny-guided taxonomic assessment of detected giant virus genomes and metagenome-assembled genomes, we observed depth-dependent structuring of divergent giant virus families mirroring dynamic physicochemical gradients in the stratified euphotic zone. Analyses of transcribed metabolic genes from giant viruses suggest viral metabolic reprogramming of hosts from the surface to a 200-m depth. Lastly, using on-deck incubations reflecting a gradient of iron availability, we show that modulating iron regimes influences the activity of giant viruses in the field. Specifically, we show enhanced infection signatures of giant viruses under both iron-replete and iron-limited conditions. Collectively, these results expand our understanding of how the water column’s vertical biogeography and chemical surroundings affect an important group of viruses within the Southern Ocean

59 BASIC BIOLOGICAL SCIENCES↗

Internally Generated and Externally Forced Multidecadal Oceanic Modes and Their Influence on the Summer Rainfall over East Asia

Abstract Interdecadal oceanic variabilities can be generated from both internal and external processes, and these variabilities can significantly modulate climate on global and regional scales, including the warming slowdown in the early twenty-first century and rainfall in East Asia. By analyzing simulations from a unique Community Earth System Model (CESM) Large Ensemble (CESM-LE) project, it is shown that the interdecadal Pacific oscillation (IPO) is primarily an internally generated oceanic variability, while the Atlantic multidecadal oscillation (AMO) may be an oceanic variability generated by internal oceanic processes and modulated by external forcing in the twentieth century. Although the observed relationship between IPO and the Yangtze–Huaihe River valley (YHRV) summer rainfall in China is well simulated in both the preindustrial control and the twentieth-century ensemble simulation, none of the twentieth-century ensemble members can reproduce the observed time evolution of both the IPO and YHRV rainfall because of the unpredictable nature of IPO on multidecadal time scales. On the other hand, although CESM-LE cannot reproduce the observed relationship between the AMO and Huanghe River valley (HRV) summer rainfall of China in the preindustrial control simulation, this relationship in the twentieth-century simulations is well reproduced, and the chance of reproducing the observed time evolution of both AMO and HRV rainfall is about 30%, indicating the important role of the interaction between the internal processes and the external forcing to realistically simulate the AMO and HRV rainfall.

54 ENVIRONMENTAL SCIENCES↗

Mapping the Energy Cascade in the North Atlantic Ocean: The Coarse-Graining Approach

Abstract A coarse-graining framework is implemented to analyze nonlinear processes, measure energy transfer rates, and map out the energy pathways from simulated global ocean data. Traditional tools to measure the energy cascade from turbulence theory, such as spectral flux or spectral transfer, rely on the assumption of statistical homogeneity or at least a large separation between the scales of motion and the scales of statistical inhomogeneity. The coarse-graining framework allows for probing the fully nonlinear dynamics simultaneously in scale and in space and is not restricted by those assumptions. This paper describes how the framework can be applied to ocean flows. Energy transfer between scales is not unique because of a gauge freedom. Here, it is argued that a Galilean-invariant subfilter-scale (SFS) flux is a suitable quantity to properly measure energy scale transfer in the ocean. It is shown that the SFS definition can yield answers that are qualitatively different from traditional measures that conflate spatial transport with the scale transfer of energy. The paper presents geographic maps of the energy scale transfer that are both local in space and allow quasi-spectral, or scale-by-scale, dynamics to be diagnosed. Utilizing a strongly eddying simulation of flow in the North Atlantic Ocean, it is found that an upscale energy transfer does not hold everywhere. Indeed certain regions near the Gulf Stream and in the Equatorial Countercurrent have a marked downscale transfer. Nevertheless, on average an upscale transfer is a reasonable mean description of the extratropical energy scale transfer over regions of O(103) km in size.

54 ENVIRONMENTAL SCIENCES↗

A Statistical Interpolation Code for Ocean Analysis and Forecasting

Abstract We present a data assimilation package for use with ocean circulation models in analysis, forecasting, and system evaluation applications. The basic functionality of the package is centered on a multivariate linear statistical estimation for a given predicted/background ocean state, observations, and error statistics. Novel features of the package include support for multiple covariance models, and the solution of the least squares normal equations either using the covariance matrix or its inverse—the information matrix. The main focus of this paper, however, is on the solution of the analysis equations using the information matrix, which offers several advantages for solving large problems efficiently. Details of the parameterization of the inverse covariance using Markov random fields are provided and its relationship to finite-difference discretizations of diffusion equations are pointed out. The package can assimilate a variety of observation types from both remote sensing and in situ platforms. The performance of the data assimilation methodology implemented in the package is demonstrated with a yearlong global ocean hindcast with a 1/4° ocean model. The code is implemented in modern Fortran, supports distributed memory, shared memory, multicore architectures, and uses climate and forecasts compliant Network Common Data Form for input/output. The package is freely available with an open source license from www.tendral.com/tsis/ .

Srinivasan, Ashwanth↗

A Hybrid Global Ocean Data Assimilation System at NCEP

Seasonal forecasting with a coupled model requires accurate initial conditions for the ocean. A hybrid data assimilation has been implemented within the National Centers for Environmental Prediction (NCEP) Global Ocean Data Assimilation System (GODAS) as a future replacement of the operational three-dimensional variational data assimilation (3DVar) method. This Hybrid-GODAS provides improved representation of model uncertainties by using a combination of dynamic and static background error covariances, and by using an ensemble forced by different realizations of atmospheric surface conditions. An observing system simulation experiment (OSSE) is presented spanning January 1991 to January 1999, with a bias imposed on the surface forcing conditions to emulate an imperfect model. The OSSE compares the 3DVar used by the NCEP Climate Forecast System (CFSv2) with the new hybrid, using simulated in situ ocean observations corresponding to those used for the NCEP Climate Forecast System Reanalysis (CFSR). The Hybrid-GODAS reduces errors for all prognostic model variables over the majority of the experiment duration, both globally and regionally. Compared to an ensemble Kalman filter (EnKF) used alone, the hybrid further reduces errors in the tropical Pacific. The hybrid eliminates growth in biases of temperature and salinity present in the EnKF and 3DVar, respectively. A preliminary reanalysis using real data shows that reductions in errors and biases are qualitatively similar to the results from the OSSE. Finally, the Hybrid-GODAS is currently being implemented as the ocean component in a prototype next-generation CFSv3, and will be used in studies by the Climate Prediction Center to evaluate impacts on ENSO prediction.

54 ENVIRONMENTAL SCIENCES↗

Sources and levels of ambient ocean sound near the antarctic peninsula

Arrays of hydrophones were deployed within the Bransfield Strait and Scotia Sea (Antarctic Peninsula region) from 2005 to 2009 to record ambient ocean sound at frequencies of up to 125 and 500 Hz. Icequakes, which are broadband, short duration signals derived from fracturing of large free-floating icebergs, are a prominent feature of the ocean soundscape. Icequake activity peaks during austral summer and is minimum during winter, likely following freeze-thaw cycles. Iceberg grounding and rapid disintegration also releases significant acoustic energy, equivalent to large-scale geophysical events. Overall ambient sound levels can be as much as ~10–20 dB higher in the open, deep ocean of the Scotia Sea compared to the relatively shallow Bransfield Strait. Noise levels become lowest during the austral winter, as sea-ice cover suppresses wind and wave noise. Ambient noise levels are highest during austral spring and summer, as surface noise, ice cracking and biological activity intensifies. Vocalizations of blue ( Balaenoptera musculus ) and fin ( B. physalus ) whales also dominate the long-term spectra records in the 15–28 and 89 Hz bands. Blue whale call energy is a maximum during austral summer-fall in the Drake Passage and Bransfield Strait when ambient noise levels are a maximum and sea-ice cover is a minimum. Fin whale vocalizations were also most common during austral summer-early fall months in both the Bransfield Strait and Scotia Sea. The hydrophone data overall do not show sustained anthropogenic sources (ships and airguns), likely due to low coastal traffic and the typically rough weather and sea conditions of the Southern Ocean.

54 ENVIRONMENTAL SCIENCES↗

Final Technical Report-The Ecology and Genomics of Co2 Fixatiion in Oceanic River Plumes

Oceanic river plumes represent some of the most productive environments on Earth. As major conduits for freshwater and nutrients into the coastal ocean, their impact on water column ecosystems extend for up to a thousand km into oligotrophic oceans. Upon entry into the oceans rivers are tremendous sources of CO 2 and dissolved inorganic carbon (DIC). Yet owing to increased light transmissivity from sediment deposition coupled with the influx of nutrients, dramatic CO 2 drawdown occurs, and plumes rapidly become sinks for CO 2 . Using state-of-the-art gene expression technology, we have examined the molecular biodiversity of CO 2 fixation in the Mississippi River Plume (MRP; two research cruises) and the Orinoco River Plume (ORP; one cruise).

54 ENVIRONMENTAL SCIENCES↗

Collaborative project. Ocean-atmosphere interaction from meso-to planetary-scale. Mechanisms, parameterization, and variability

This project aims to improve long term global climate simulations by resolving ocean mesoscale activity and the corresponding response in the atmosphere. The main computational objectives are; i) to perform and assess Community Earth System Model (CESM) simulations with the new Community Atmospheric Model (CAM) spectral element dynamical core; ii) use static mesh refinement to focus on oceanic fronts; iii) develop a new Earth System Modeling tool to investigate the atmospheric response to fronts by selectively filtering surface flux fields in the CESM coupler. The climate research objectives are 1) to improve the coupling of ocean fronts and the atmospheric boundary layer via investigations of dependency on model resolution and stability functions: 2) to understand and simulate the ensuing tropospheric response that has recently been documented in observations: and 3) to investigate the relationship of ocean frontal variability to low frequency climate variability and the accompanying storm tracks and extremes in high resolution simulations. This is a collaborative multi-institution project consisting of computational scientists, climate scientists and climate model developers. It specifically aims at DOE objectives of advancing simulation and predictive capability of climate models through improvements in resolution and physical process representation.

54 ENVIRONMENTAL SCIENCES↗

Measurements of Aerosols, Radiation, and Clouds over the Southern Oceans (MARCUS) Science Plan

The Southern Ocean (SO) is the stormiest place on earth, buffeted by winds and waves that circle the ice of Antarctica, and sheathed in clouds that mantle a dynamic ocean with rich ecosystems. The remote and usually pristine environment, typically removed from anthropogenic and natural continental aerosol sources, makes the SO unique for examining cloud-aerosol interactions for liquid and ice clouds, and the role of primary and secondary marine biogenic aerosols and sea salt. There is strong seasonality in aerosol sources and sinks over the SO that are poorly understood. Weather and climate models are challenged by uncertainties and biases in the simulation of SO clouds, aerosols, and air-sea exchanges that trace to poor physical understanding of these processes, and by cloud feedbacks (e.g., phase changes) in response to warming. Models almost universally underestimate sunlight reflected by near surface cloud, particularly in the cold sector of cyclonic storm systems, and this may be due to difficulties in representing pervasive supercooled and mixed-phase boundary-layer (BL) clouds. Motivated by these issues, a large international multi-agency effort called the Southern Ocean Clouds Radiation Transport Aerosol Transport Experimental Study (SOCRATES) has been proposed to improve our understanding of clouds, aerosols, air-sea exchanges and their interactions over the SO. Coincident with SOCRATES, the Measurements of Aerosols, Radiation and CloUds over the Southern Oceans (MARCUS) experiment will be conducted where the second U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility’s Mobile Facility (AMF2) will be installed on the Australian Antarctic supply vessel Aurora Australis (AA) as it makes routine transits between Hobart, Australia and the Antarctic, visiting the Australian Antarctic stations Mawson, Davis, and Casey, as well as Macquarie Island. During MARCUS, the AMF-2 will acquire comprehensive observations of aerosols (including cloud condensation nuclei [CCN] and ice nucleating particles [INP]) in the BL, vertical distributions of macrophysical and microphysical properties of liquid and mixed-phase clouds, and downwelling radiative fluxes over the SO during a 7-month period (September 2017 to April 2018) centered upon the Austral summer. The MARCUS observations will be self-standing and unique in that they will capture the variability in aerosol and cloud properties across the SO from spring to autumn, especially in cold waters at latitudes poleward 55° S, where supercooled and mixed-phase BL clouds in the cold sector of cyclones are frequent and where past and planned SO observations are most sparse.

54 ENVIRONMENTAL SCIENCES↗

Climate Modeling: Ocean Cavities below Ice Shelves

The Accelerated Climate Model for Energy (ACME), a new initiative by the U.S. Department of Energy, includes unstructured-mesh ocean, land-ice, and sea-ice components using the Model for Prediction Across Scales (MPAS) framework. The ability to run coupled high-resolution global simulations efficiently on large, high-performance computers is a priority for ACME. Sub-ice shelf ocean cavities are a significant new capability in ACME, and will be used to better understand how changing ocean temperature and currents influence glacial melting and retreat. These simulations take advantage of the horizontal variable-resolution mesh and adaptive vertical coordinate in MPAS-Ocean, in order to place high resolution below ice shelves and near grounding lines.

54 ENVIRONMENTAL SCIENCES↗

Collaborative Project: Ocean-Atmosphere Interaction From Meso- to Planetary-Scale: Mechanisms, Parameterization, and Variability

The project focused on the dynamics and scale dependence of the boundary layer response, the coupled responses in the Pacific, and low frequency oceanic processes. Using theory and model simulations, we found coupling of sea surface temperatures associated with the ocean eddy field and the atmospheric boundary layer be dependent on scale, and captured in wave-number space by transfer functions. Investigations of coupled processes focused on the sea surface temperatures scales of eastern boundary upwelling system, and showed stability and eddy variance in the Kuroshio Extension to be predictable with lead times of several years through ocean Rossby waves and coupling with the atmosphere. In addition to these dynamical processes, we found that a significant part of the ocean evolution is associated with density compensating temperature and salinity anomalies, that, unlike Rossby waves, behave like passive tracers and follow the mean circulation.

54 ENVIRONMENTAL SCIENCES↗

Improved Time-Stepping Methods in Global to Regional Ocean Modeling

Improvements in time-stepping schemes can provide substantial improvements in the throughput of global ocean-climate models, but is challenging due to large variations in time scales in the dynamics and spatial scales in the global, variable resolution mesh. Two funded projects aim to speed up the Model for Prediction Across Scales-Ocean (MPAS-Ocean). The first will add a variable-timestepping formulation to MPAS-Ocean, which is a critical step towards running efficiently on global variable-resolution meshes with regional and coastal refinement. The second optimizes the barotropic (depth-integrated) mode, which is currently a performance bottleneck at high core counts. The proposed compute time will be used for extensive model validation and parameter studies for both methods.

54 ENVIRONMENTAL SCIENCES↗

A modular biogeochemical modeling suite for next-generation ocean models (Final Report)

The Marine Biogeochemistry Library (MARBL) is a self-contained implementation of ocean biogeochemistry suitable for incorporation in Earth system models. The default configuration of MARBL represents multiple nutrient co-limitation (N, P, Si, and Fe), includes three explicit phytoplankton functional groups (diatoms, diazotrophs, and pico/nano phytoplankton), and one implicit group (calcifiers); there is one zooplankton group. MARBL includes fully prognostic carbonate chemistry and simulates sinking particulate organic matter implicitly, subject to ballasting by mineral dust, biogenic mineral carbonate and opal. MARBL represents subgrid-scale variations in light, variable C:P stoichiometry, semi-labile and refractory dissolved organic material pools, prognostic oceanic emission of ammonia, and an explicit ligand tracer that complexes iron. MARBL is fully runtime-configurable, and is flexible enough to accommodate a variable number of plankton functional types and ecosystem configurations. Critically, MARBL is implemented to be independent of any particular ocean general circulation model (OGCM); it is a standalone library that interfaces with an OGCM's via an explicit "driver" layer. MARBL can thus be coupled to multiple OGCM's, enabling efficient maintenance, development, and cross-model inter-comparison. MARBL is the ocean biogeochemistry component for the Community Earth System Model and the DOE’s Energy Exascale Earth System Model.

54 ENVIRONMENTAL SCIENCES↗

2020 State of the Science Report, Chapter 1: Marine Renewable Energy and Ocean Energy System

Research, development, and deployment of marine renewable energy (MRE) conversion technologies that harvest all forms of ocean renewable resources are being advanced around the world. The potential benefits derived from capturing the abundant energy of tides, waves, ocean currents, as well as thermal and salinity gradients, continue to drive the development of the emerging MRE industry. Stakeholder understanding of the potential benefits of MRE as a renewable energy source is informed by increased science-based understanding of the potential effects of MRE installations worldwide. The international Ocean Energy Systems (OES)-Environmental collaboration continues to promote global technology cooperation and information exchange to accelerate environmentally acceptable development of viable ocean energy systems. https://tethys.pnnl.gov/publications/state-of-the-science-2020-chapter-1-MRE-OES

13 HYDRO ENERGY↗