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All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Assembly of the Populus Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors

Recent work shows that the plant microbiome, particularly the initial assembly of this microbiome, influences plant health, survival, and fitness. Here, we characterize the initial assembly of the Populus microbiome across ten genotypes belonging to two poplar species in a common garden using 16S rRNA gene and ITS2 region amplicon sequencing of the leaf endosphere, leaf surface, root endosphere, and rhizosphere. We sampled these microbiomes three times throughout the first growing season and found that the composition of the microbiome changed dramatically over time across all plant-associated habitats and host genotypes. For archaea and bacteria, these changes were dominated by strong homogenizing selection (accounting for 29 to 62% of pairwise comparisons). However, fungal assembly was generally characterized by multiple ecological assembly processes (i.e., a mix of weak selective and dispersal processes). Interestingly, genotype, while a significant moderator of microbiome composition, generally explained less variation than sample date across plant-associated habitats. We defined a set of core genera that accounted for, on average, 36% of the microbiome. The relative abundance of this core community was consistent over time. Additionally, using source tracking modeling, we determined that new microbial taxa colonize from both aboveground and belowground sources, and combined with our ecological assembly null models, we found that both selective and dispersal processes explained the differences between exo- (i.e., leaf surface and rhizosphere) and endospheric microbiomes. Taken together, our results suggest that the initial assembly of the Populus microbiome is time-, genotype-, and habitat-dependent and is moderated by both selective and stochastic factors.

16S rRNA↗
DOE OSTI2021

Surface-wave tomography of the Emeishan large igneous province (China): Magma storage system, hidden hotspot track, and its impact on the Capitanian mass extinction

Large igneous provinces (LIPs) are commonly associated with mass extinctions. However, the precise relations between LIPs and their impacts on biodiversity is enigmatic, given that they can be asynchronous. It has been proposed that the environmental impacts are primarily related to sill emplacement. Therefore, the structure of LIPs' magma storage system is critical because it dictates the occurrence and timing of mass extinction. We use surface-wave tomography to image the lithosphere under the Permian Emeishan large igneous province (ELIP) in southwestern China. We find a northeast-trending zone of high shear-wave velocity (Vs) and negative radial anisotropy (Vsv > Vsh; v and h are vertically and horizontally polarized S waves, respectively) in the crust and lithosphere. We rule out the possibilities of rifting or orogenesis to explain these seismic characteristics and interpret the seismic anomaly as a mafic-ultramafic, dike-dominated magma storage system of the ELIP. We further propose that the anomaly represents a hidden hotspot track that was emplaced before the ELIP eruption. A zone of higher velocity but less-negative radial anisotropy, on the hotspot track but to the northeast of the eruption center in the Panxi region, reflects an elevated proportion of sills emplaced at the incipient stage of the ELIP. Liberation of poisonous gases by the early sill intrusions explains why the mid-Capitanian global biota crisis preceded the peak ELIP eruption by 2–3 m.y.

58 GEOSCIENCES↗
DOE OSTI2025

RG-stable parameter relations of a scalar field theory in absence of a symmetry

Abstract The stability of tree-level relations among the parameters of a quantum field theory with respect to renormalization group (RG) running is typically explained by the existence of a symmetry. We examine a toy model of a quantum field theory of two real scalars in which a tree-level relation among the squared-mass parameters of the scalar potential appears to be RG-stable without the presence of an appropriate underlying symmetry. The stability of this relation with respect to renormalization group running can be explained by complexifying the original scalar field theory. It is then possible to exhibit a symmetry that guarantees the relations of relevant beta functions of squared-mass parameters of the complexified theory. Among these relations, we can identify equations that are algebraically identical to the corresponding equations that guarantee the stability of the relations among the squared-mass parameters of the original real scalar field theory where the symmetry of the complexified theory is no longer present.

Haber, Howard E. (ORCID:0000000173388104)↗
DOE OSTI2021

Open quantum systems for quarkonia

I review recent applications of the open quantum system framework in the understanding of quarkonium suppression in heavy-ion collisions, which has been used as a probe of the quark–gluon plasma for decades. The derivation of the Lindblad equations for quarkonium in both the quantum Brownian motion and the quantum optical limits and their semiclassical counterparts is explained. The hierarchy of time scales assumed in the derivation is justified from the separation of energy scales in nonrelativistic effective field theories of QCD. Physical implications of the open quantum system approach are also discussed. Finally, I list some open questions for future studies.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Collective dynamics of polarized spin-half fermions in relativistic heavy-ion collisions

Standard relativistic hydrodynamics has been successful in describing the properties of the strongly interacting matter produced in the heavy-ion collision experiments. Recently, there has been a significant theoretical advancement in this field to explain spin polarization of hadrons emitted in these processes. Although current models have successfully explained some of the experimental data based on the coupling between spin polarization and vorticity of the medium, they still lack a clear understanding of the differential measurements. This is commonly interpreted as an indication that the spin needs to be treated as an independent degree of freedom whose dynamics is not entirely bound to flow circulation. In particular, if the spin is a macroscopic property of the system, in equilibrium its dynamics should follow hydrodynamic laws. Here, we develop a framework of relativistic hydrodynamics which includes spin degrees of freedom from the quantum kinetic theory for Dirac fermions and use it for modeling the dynamics of matter. Following experimental observations, we assume that the polarization effects are small and derive conservation laws for the net baryon current, the energy–momentum tensor and the spin tensor based on the de Groot–van Leeuwen–van Weert definitions of these currents. We present various properties of the spin polarization tensor and its components, analyze the propagation properties of the spin polarization components, and derive the spin-wave velocity for arbitrary statistics. We find that only the transverse spin components propagate, analogously to the electromagnetic waves. Finally, using our framework, we study the space–time evolution of the spin polarization for the systems respecting certain space–time symmetries and calculate the mean spin polarization per particle, which can be compared to the experimental data. We find that, for some observables, our spin polarization results agree qualitatively with the experimental findings and other model calculations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Spin Berry points as crucial for ultrafast demagnetization

Laser-induced ultrafast demagnetization has puzzled researchers around the world for over two decades. Intrinsic complexity in electronic, magnetic and phononic subsystems is difficult to understand microscopically. So far, it is not possible to explain demagnetization using a single mechanism, which suggests a crucial piece of information still missing. In this paper, we return to a fundamental aspect of physics: spin and its change within each band in the entire Brillouin zone. We employ face-centered cubic (fcc) Ni as an example and use an extremely dense k mesh to map out spin changes for every band close to the Fermi level along all the high symmetry lines. To our surprise, spin angular momentum at some special k points abruptly changes from [Formula: see text] to [Formula: see text] simply by moving from one crystal momentum point to the next. This explains why intraband transitions, which the spin superdiffusion model is based upon, can induce a sharp spin moment reduction, and why electric current can change spin orientation in spintronics. These special k points, which are called spin Berry points [M. V. Berry, Proc. R. Soc. Lond. A 393 (1984) 45], are not random and appear when several bands are close to each other, so the Berry potential of spin majority states is different from that of spin minority states. Although within a single band, spin Berry points jump, when we group several neighboring bands together, they form distinctive smooth spin Berry lines. It is the band structure that disrupts those lines. Spin Berry points are crucial to laser-induced ultrafast demagnetization and spintronics.

Physics↗
DOE OSTI2021

Demonstration of Electrochemically-Driven CO 2 Separation Using Hydroxide Exchange Membranes

Hydroxide exchange membrane fuel cells (HEMFCs) are a potentially lower-cost hydrogen fuel cell technology; however, ambient levels of CO 2 in air significantly reduce HEMFCs’ performance. In this work, we demonstrate an electrochemically-driven CO 2 separator (EDCS) which can be used to remove ambient levels of CO 2 from air upstream of the HEMFC stack in fuel cell vehicles, protecting it from CO 2 -related performance losses. The EDCS operating window was explored for current density, anode flow, and cathode flow with respect to its impact on CO 2 separation performance. Additionally, gas-phase mass transport was improved by selecting flow fields and gas diffusion layers conducive to the EDCS operating regime. The use of a carbon-ionomer interlayer at the cathode was explored and improved CO 2 removal performance from 77.7% to 98.2% at 20 mA cm −2 . An analytical, 1-D model is used to explain the experimental observations and design improvements. A single-cell, 25 cm 2 EDCS using the aforementioned improved design demonstrated greater than 98% CO 2 removal at a cathode flow rate of 1300 sccm for 100 h with 2.7% hydrogen stack consumption.

Matz, Stephanie↗
DOE OSTI2021

Siloxane Deposition on the Ni-YSZ Solid Oxide Fuel Cell Anode Exposed to Bio-Syngas

Siloxane, a common contaminant present in biogas, is known for adverse effects on cogeneration prime movers. In this study, the siloxane deposition products and mechanism in the solid oxide fuel cell nickel-yttria stabilized zirconia (Ni-YSZ) anode are investigated analytically and experimentally. An SOFC with Ni-YSZ anode and pure Ni/YSZ pellets were exposed to a simulated biogas-reformate fuel with octamethylcyclotetrasiloxane (D4) contamination at 750 °C. The electrochemical characterization results show that the SOFCs performance degradation caused by D4 contamination is irreversible. Morphology and XRD results illustrate that silicon and carbon deposition can both be detected in the anode and pellets. Graphite, SiC and SiO2 are all possible products based on the results of XRD test. Here, according to the formation of graphite and SiC, the new mechanism suggests that carbon is also an essential factor in siloxane contamination of Ni-YSZ anodes besides silicon, which can be explained by the catalytic and electrochemical analysis.

25 ENERGY STORAGE↗
DOE OSTI2023

Predicting fatal heat and humidity using the heat index model

A unique wet-bulb temperature of 35°C is often used as the threshold for human survivability, but recent experiments have shown that a person’s core temperature starts to rise at a wide range of critical wet-bulb temperatures. Here, it is shown that the model underlying the heat index correctly predicts those critical wet-bulb temperatures, explaining 95% of the variance in the values observed in laboratory heat-stress experiments. This is the first time the heat-index model has been validated against physiological data from laboratory experiments. For light and moderate exertion in an indoor setting, the heat index model predicts that the critical wet-bulb temperature ranges from 20 to 32°C, depending on the relative humidity, consistent with experimental results. Furthermore, for the same setting and exertion, the heat index model predicts fatal wet-bulb temperatures ranging from 24 to 37°C. Recent experiments have identified the critical combinations of heat and humidity, in an indoor setting, above which an individual is unable to maintain a standard core temperature, indicating severe heat stress. It is shown here why this state of severe heat stress cannot be predicted using the wet-bulb temperature. Instead, it is shown that the recently extended heat index model can explain nearly all of the variance in the observed critical combinations of temperature and humidity, and can be used to calculate fatal combinations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Quantile-Dependent Expressivity of Serum Uric Acid Concentrations

“Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., serum uric acid) is high or low relative to its distribution. Analyses were performed to test whether serum uric acid heritability is quantile-specific and whether this could explain some reported gene-environment interactions. Methods. Serum uric acid concentrations were analyzed from 2151 sibships and 12,068 offspring-parent pairs from the Framingham Heart Study. Quantile-specific heritability from offspring-parent regression slopes (β OP , h 2 = 2β OP /(1 + r spouse )) and full-sib regression slopes (β FS ,h 2 = {(1 + 8r spouse β FS ) 0.5 - 1}/(2r spouse ) was robustly estimated by quantile regression with nonparametric significance assigned from 1000 bootstrap samples. Results. Quantile-specific h 2 (±SE) increased with increasing percentiles of the offspring’s sex- and age-adjusted uric acid distribution when estimated from β OP (P trend = 0.001): 0.34 ± 0.03 at the 10th, 0.36 ± 0.03 at the 25th, 0.41 ± 0.03 at the 50th, 0.46 ± 0.04 at the 75th, and 0.49 ± 0.05 at the 90th percentile and when estimated from β FS (P trend = 0.006). This is consistent with the larger genetic effect size of (1) the SLC2A9 rs11722228 polymorphism in gout patients vs. controls, (2) the ABCG2 rs2231142 polymorphism in men vs. women, (3) the SLC2A9 rs13113918 polymorphism in obese patients prior to bariatric surgery vs. two-year postsurgery following 29 kg weight loss, (4) the ABCG2 rs6855911 polymorphism in obese vs. nonobese women, and (5) the LRP2 rs2544390 polymorphism in heavier drinkers vs. abstainers. Quantile-dependent expressivity may also explain the larger genetic effect size of an SLC2A9/PKD2/ABCG2 haplotype for high vs. low intakes of alcohol, chicken, or processed meats. Conclusions. Heritability of serum uric acid concentrations is quantile-specific.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

CoMTE: Counterfactual Explanations for Supervised Machine Learning Frameworks on Multivariate Time Series Data

CoMTE is a novel explainability technique that provides counterfactual explanations for supervised machine learning frameworks on multivariate time series data. CoMTE outperforms state-of-the-art explainability methods on several different machine learning frameworks and data sets in comprehensibility and robustness. CoMTE can be used to debug machine learning frameworks and gain a better understanding of the underlying multivariate time series data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. SAND2021-1686 O

Leung, VitusJ.↗
DOE OSTI2020

Comparison of Eulerian Bin and Lagrangian Particle-Based Schemes in Simulations of Pi Chamber Dynamics and Microphysics

This paper presents a comparison of simulations applying either a traditional Eulerian bin microphysics or a novel particle-based Lagrangian approach to represent CCN activation and cloud droplet growth. The Eulerian microphysics solve the evolution equation for the spectral density function, whereas the Lagrangian approach follows computational particles referred to as superdroplets. Each superdroplet represents a multiplicity of natural droplets that makes the Lagrangian approach computationally feasible. The two schemes apply identical representation of CCN activation and use the same droplet growth equation; these make direct comparison between the two schemes practical. The comparison, the first of its kind, applies an idealized simulation setup motivated by laboratory experiments with the Pi Chamber and previous model simulations of the Pi Chamber dynamics and microphysics. The Pi Chamber laboratory apparatus considers interactions between turbulence, CCN activation, and cloud droplet growth in moist Rayleigh–Bénard convection. Simulated steady-state droplet spectra averaged over the entire chamber are similar, with the mean droplet concentration, mean radius, and spectral width close in Eulerian and Lagrangian simulations. Small differences that do exist are explained by the inherent differences between the two schemes and their numerical implementation. The local droplet spectra differ substantially, again in agreement with the inherent limitations of the theoretical foundation behind each approach. There is a general agreement between simulations and Pi Chamber observations, with simplifications of the CCN activation and droplet growth equation used in the simulations likely explaining specific differences.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Intermodel Spread in the Pattern Effect and Its Contribution to Climate Sensitivity in CMIP5 and CMIP6 Models

Radiative feedbacks depend on the spatial patterns of sea surface temperature (SST) and thus can change over time as SST patterns evolve—the so-called pattern effect. In this study, we investigate intermodel differences in the magnitude of the pattern effect and how these differences contribute to the spread in effective equilibrium climate sensitivity (ECS) within CMIP5 and CMIP6 models. Effective ECS in CMIP5 estimated from 150-yr-long abrupt4×CO2 simulations is on average 10% higher than that estimated from the early portion (first 50 years) of those simulations, which serves as an analog for historical warming; this difference is reduced to 7% on average in CMIP6. The (negative) net radiative feedback weakens over the course of the abrupt4×CO2 simulations in the vast majority of CMIP5 and CMIP6 models, but this weakening is less dramatic on average in CMIP6. For both ensembles, the total variance in the effective ECS is found to be dominated by the spread in radiative response on fast time scales, rather than the spread in feedback changes. Using Green’s functions derived from two AGCMs shows that the spread in feedbacks on fast time scales may be primarily due to differences in atmospheric model physics, whereas the spread in feedback evolution is primarily governed by differences in SST patterns. Intermodel spread in feedback evolution is well explained by differences in the relative warming in the West Pacific warm-pool regions for the CMIP5 models, but this relation fails to explain differences across the CMIP6 models, suggesting that a stronger sensitivity of extratropical clouds to surface warming may also contribute to feedback changes in CMIP6.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Tracking moisture sources of precipitation over Central Asia: A study based on the water-source-tagging method

Central Asia is a semi-arid to arid region that is sensitive to hydrological changes. We use the Community Atmosphere Model version 5 (CAM5), equipped with a water tagging capability, to investigate the major moisture sources for climatological precipitation and its long-term trends over Central Asia. Europe, the north Atlantic and local evaporation, which explain 33.2±1.5%, 23.0±2.5% and 19.4±2.2% of the precipitation, respectively, are identified as the most dominant moisture sources for northern Central Asia (NCA). For precipitation over southern Central Asia (SCA), Europe, the north Atlantic and local evaporation contributes 25.4±2.7%, 18.0±1.7% and 14.7±1.9%, respectively. In addition, the contributions of South Asia (8.6±1.7%) and Indian Ocean (9.5±2.0%) are also substantial for SCA. Modulated by the seasonal meridional shift of subtropical westerly jet, moisture originating from low- and mid-latitude is important in winter, spring and autumn, while northern Europe contributes more in summer. We also explain the observed drying trends over southeastern Central Asia in spring and over NCA in summer during 1956-2005. The drying trend over the southeastern Central Asia in spring is mainly due to the decrease of local evaporation and weakened moisture fluxes from the Arabian Peninsula and Arabian Sea associated with the warming Western Pacific. The drying trend over NCA in summer can be attributed to the decrease of local evaporation and reduced moisture from northern Europe due to the southward shift of the subtropical westerly jet.

Jiang, Jie↗
DOE OSTI2021

The Globally Coherent Pattern of Autumn Monsoon Precipitation

Over most tropical land areas, the annual peak in precipitation occurs during summer, associated with the local monsoon circulation. However, in some coastal regions in the tropics the bulk of annual precipitation occurs in autumn, after the low-level summer monsoon westerlies have abated. Examples include the Nordeste region of Brazil, southeastern India and Sri Lanka, and coastal Tanzania. Unlike equatorial regions, they receive little rainfall during local spring. Such regions are present along the eastern coasts of nearly all continents, suggesting that they comprise a coherent yet previously unrecognized global phenomenon. In this study, we identify eight tropical locations that experience an “autumn monsoon” and show that this unusual seasonal cycle is generated by similar mechanisms in all of these. When these regions receive their peak rainfall, they lie poleward of the ITCZ in easterly low-level winds. The spatial structure of precipitation in these regions can be explained by their placement to the east of mountain ranges that organize moist convection on their windward sides. However, orographic forcing alone cannot explain their unique seasonal cycle: despite similarities in wind direction, surface humidity, and sea surface temperatures (SSTs) between autumn and spring, these regions receive significantly more rainfall in autumn than in spring. Here, we show that this is due to differences in the large-scale atmospheric stability between the equinoctial seasons, which can be captured by a relative SST metric and is influenced by SSTs in the remote eastern upwelling zones of the Pacific and Atlantic Oceans.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Seasonal Locking of the MJO’s Southward Detour of the Maritime Continent: The Role of the Australian Monsoon

Abstract This study investigates why the major convective envelope of the Madden–Julian oscillation (MJO) detours to the south of the Maritime Continent (MC) only during boreal winter [December–March (DJFM)]. To examine processes affecting this MJO detour, the MJO-related variance of precipitation and column-integrated moisture anomalies in DJFM are compared with those in the seasons before [October–November (ON)] and after [April–May (AM)]. While MJO precipitation variance is much higher in the southern MC (SMC) during DJFM than in other seasons, the MJO moisture variance is comparable among the seasons, implying that the seasonal locking of the MJO’s southward detour cannot be explained by the magnitude of moisture anomalies alone. The higher precipitation variance in the SMC region is partly explained by the much higher moisture sensitivity of precipitation in DJFM than in other seasons, resulting in a more efficient conversion of anomalous moisture to anomalous precipitation. DJFM is also distinguishable from the other seasons by stronger positive wind–evaporation feedback onto MJO precipitation anomalies due to the background westerly wind in the lower troposphere. It is found that the seasonal cycle of moisture–precipitation coupling and wind–evaporation feedback in the SMC region closely follows that of the Australian monsoon, which is active exclusively in DJFM. Our results suggest that the MJO’s southward detour in the MC is seasonally locked because it occurs preferentially when the Australian monsoon system produces a background state that is favorable for MJO development in the SMC.

Intraseasonal variability↗
DOE OSTI2023

The Influence of Large-Scale Radiation Anomalies on Tropical Cyclone Frequency

Abstract The response of tropical cyclone (TC) frequency to sea surface warming is uncertain in climate models. We hypothesize that one source of uncertainty is the anomalies of large-scale atmospheric radiation in response to climate change, and whose influence on TC frequency is investigated. Given two atmospheric models with opposite TC frequency responses to uniform sea surface warming, we interchange their atmospheric radiation anomalies in experiments with prescribed radiative heating rates. The largest model discrepancy occurs in the western North Pacific, where the TC frequency tends to increase with anomalous large-scale ascent caused by prescribed positive radiation anomalies, while the TC frequency tends to decrease with anomalous large-scale descent caused by prescribed negative radiation anomalies. The model spread in TC frequency response is approximated by the model spread in the frequency response of pre-TC vortices (seeds), which is explained by changes in the large-scale circulation using a downscaling formula known as the seed propensity index. We further generalize the index to predict the influence of large-scale radiation anomalies on TC seed frequency. The results show that model spread in TC and seed frequency response can be reduced when constraining the large-scale radiation anomalies. Significance Statement It is difficult to predict whether tropical cyclones will occur more or less frequently in the future and by how much. We show that tropical cyclone frequency is strongly influenced by the global pattern of heating and cooling due to radiation, a process that has been neglected in existing theories. Our theory improves understanding of how tropical cyclones respond to climate change, explaining why one model may predict a frequency increase while a different but equally realistic model may predict a frequency decrease. One reason for the difficulty in predicting tropical cyclone frequency is found to be the difficulty in predicting how global cloud distribution will change in the future.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Understanding the Spatiotemporal Variability of Tropical Orographic Rainfall Using Convective Plume Buoyancy

Abstract Mechanical forcing by orography affects precipitating convection across many tropical regions, but controls on the intensity and horizontal extent of the orographic precipitation peak and rain shadow remain poorly understood. A recent theory explains this control of precipitation as arising from modulation of lower-tropospheric temperature and moisture by orographic mechanical forcing, setting the distribution of convective rainfall by controlling parcel buoyancy. Using satellite and reanalysis data, we evaluate this theory by investigating spatiotemporal precipitation variations in six mountainous tropical regions spanning South and Southeast Asia, and the Maritime Continent. We show that a strong relationship holds in these regions between daily precipitation and a measure of convective plume buoyancy. This measure depends on boundary layer thermodynamic properties and lower-free-tropospheric moisture and temperature. Consistent with the theory, temporal variations in lower-free-tropospheric temperature are primarily modulated by orographic mechanical lifting through changes in cross-slope wind speed. However, winds directed along background horizontal moisture gradients also influence lower-tropospheric moisture variations in some regions. The buoyancy measure is also shown to explain many aspects of the spatial patterns of precipitation. Finally, we present a linear model with two horizontal dimensions that combines mountain wave dynamics with a linearized closure exploiting the relationship between precipitation and plume buoyancy. In some regions, this model skillfully captures the spatial structure and intensity of rainfall; it underestimates rainfall in regions where time-mean ascent in large-scale convergence zones shapes lower-tropospheric humidity. Overall, these results provide new understanding of fundamental processes controlling subseasonal and spatial variations in tropical orographic precipitation.

54 ENVIRONMENTAL SCIENCES↗