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At least 1,009 records · Page 56

GeneLab: A Systems Biology Platform for Omics Analysis

NASA's GeneLab includes an open-access repository of some 200+ omics datasets generated by biological experiments relevant to spaceflight (including simulated cosmic radiation and microgravity). In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab is now transforming the data in the repository into actual biological and physiological knowledge of the genetic and proteomic signatures found in these samples. This processed data is being derived by establishing standard data analysis workflows vetted by 114 scientists who are members of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). AWG members from institutes spanning the U.S. and four other countries participate on a voluntary basis. The AWGs meet monthly to discuss data mining, compare results and interpretations, and test forthcoming releases of the GeneLab Data Systems (GLDS). GLDS version 3.0 has been available to the general public since October 1st 2018, and has been providing a professional state-of-the-art bioinformatics platform for everyone in the space biology community to upload their data into a space biology omics data commons, to process their data with vetted standard workflows and to compare to existing analyses. The user interface for the platform is being designed to be accessible to a broad variety of users including those with limited bioinformatics experience, including high school and college students who can use it to learn about omics data analysis and space biology. As such, Genelab will constitute a powerful general public outreach capability of NASA and the Space Biology community at large. Data mining of the GeneLab database by the AWG has already started generating very interesting findings, including reports linking specific spaceflight conditions such as radiation, microgravity or carbon dioxide levels to molecular changes seen across various species. In this presentation, we will report on the current and future objectives for GeneLab, and review recent studies reported by the various AWGs relating molecular changes observed in various animal models and tissue with microgravity, radiation, circadian rhythm, hydration and carbon dioxide conditions.

Omics↗

GeneLab: A Systems Biology Platform for Omics Analysis: Disseminate and Reuse Data, Tools, and Samples Post-Project

NASA's GeneLab includes an open-access repository of some 200 plus omics datasets generated by biological experiments relevant to spaceflight (including simulated cosmic radiation and microgravity). In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab is now transforming the data in the repository into actual biological and physiological knowledge of the genetic and proteomic signatures found in these samples. This processed data is being derived by establishing standard data analysis workflows vetted by 114 scientists who are members of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). AWG members from institutes spanning the U.S. and four other countries participate on a voluntary basis. The AWGs meet monthly to discuss data mining, compare results and interpretations, and test forthcoming releases of the GeneLab Data Systems (GLDS). GLDS version 3.0 has been available to the general public since October 1st 2018, and has been providing a professional state-of-the-art bioinformatics platform for everyone in the space biology community to upload their data into a space biology omics data commons, to process their data with vetted standard workflows and to compare to existing analyses. The user interface for the platform is being designed to be accessible to a broad variety of users including those with limited bioinformatics experience, including high school and college students who can use it to learn about omics data analysis and space biology. As such, Genelab will constitute a powerful general public outreach capability of NASA and the Space Biology community at large. Data mining of the GeneLab database by the AWG has already started generating very interesting findings, including reports linking specific spaceflight conditions such as radiation, microgravity or carbon dioxide levels to molecular changes seen across various species. In this presentation, we will report on the current and future objectives for GeneLab, and review recent studies reported by the various AWGs relating molecular changes observed in various animal models and tissue with microgravity, radiation, circadian rhythm, hydration and carbon dioxide conditions.

Omics↗

Estimation of vegetation cover at subpixel resolution using LANDSAT data

The present report summarizes the various approaches relevant to estimating canopy cover at subpixel resolution. The approaches are based on physical models of radiative transfer in non-homogeneous canopies and on empirical methods. The effects of vegetation shadows and topography are examined. Simple versions of the model are tested, using the Taos, New Mexico Study Area database. Emphasis has been placed on using relatively simple models requiring only one or two bands. Although most methods require some degree of ground truth, a two-band method is investigated whereby the percent cover can be estimated without ground truth by examining the limits of the data space. Future work is proposed which will incorporate additional surface parameters into the canopy cover algorithm, such as topography, leaf area, or shadows. The method involves deriving a probability density function for the percent canopy cover based on the joint probability density function of the observed radiances.

Jasinski, Michael F.↗

A Computationally-Efficient Inverse Approach to Probabilistic Strain-Based Damage Diagnosis

This work presents a computationally-efficient inverse approach to probabilistic damage diagnosis. Given strain data at a limited number of measurement locations, Bayesian inference and Markov Chain Monte Carlo (MCMC) sampling are used to estimate probability distributions of the unknown location, size, and orientation of damage. Substantial computational speedup is obtained by replacing a three-dimensional finite element (FE) model with an efficient surrogate model. The approach is experimentally validated on cracked test specimens where full field strains are determined using digital image correlation (DIC). Access to full field DIC data allows for testing of different hypothetical sensor arrangements, facilitating the study of strain-based diagnosis effectiveness as the distance between damage and measurement locations increases. The ability of the framework to effectively perform both probabilistic damage localization and characterization in cracked plates is demonstrated and the impact of measurement location on uncertainty in the predictions is shown. Furthermore, the analysis time to produce these predictions is orders of magnitude less than a baseline Bayesian approach with the FE method by utilizing surrogate modeling and effective numerical sampling approaches.

Warner, James E.↗

Comparison of Surface Pressure Fluctuations from Flight and Wind Tunnel Tests on the Orion Multi-Purpose Crew Vehicle

Transonic and supersonic wind-tunnel test of scaled-models are used to predict the surface pressure fluctuations on aerospace vehicles. An outstanding question is how good are such tests? The present paper attempts to answer this question for the Multi-Purpose Crew Vehicle by comparing data from the Ascent Abort-2 (AA2) flight test with those measured in two different scaled-model wind tunnel tests (WTT) 51AS and 134AS. A sensor by sensor and a Mach by Mach comparisons of spectra of surface pressure fluctuations are presented for nominal ascent part of flight. Spectra measured over a large part of the vehicle surface were found to be dominated by the wake vortices shed from the four Abort Motor nozzles situated on the upper part of the Launch Abort System. It was found that the shapes of the scaled-up spectra from WTTs were very close to those measured in the flight, but the levels, for the most part, were found to be lower than the flight data. The highest differences were from the regions of complex flows where wakes from the adjacent nozzles interacted with the free-stream flow. There the WTT predicted levels were consistently 2dB to 6dB lower than the flight data, across all spectral bands. Another region of significant under-prediction was the local separated flow region at the Fillet-Ogive junction. The accuracy of the sharp spectral peaks from regions along a nozzle axis was found to be dependent on the fidelity of the model. The model in the 51AS WTT used a simplified contour, which resulted in a large under prediction of the spectral peak by 1dB to 10dB. A limited number of data from 134AS, where the model accurately captured all features of the nozzles of the flight vehicle, however; showed that the under prediction was lower: 1-2dB. The fluctuation spectra on the large protuberance of the Umbilical Cover was found to be reasonably well-predicted by 134AS WTT, which meticulously reproduced a scaled-down shape of this protuberance. Such information will help to determine the margins to be applied to wind-tunnel data to create flight environments.

MPCV↗

On the temperature and the interstellar nature of coronal gas observed by Copernicus

More detailed scans of ions expected in interstellar absorption at temperatures of 100,000 to 1 million K have been made with Copernicus in five stars: Alpha Vir, Beta Cen, Lambda Sco, Mu Col, and HD 28497. Preliminary data show that the absorption due to O VI is stationary compared with the velocities of stellar absorption in the spectrum of the spectroscopic binary Lambda Sco, thus demonstrating its nonstellar nature. Ionization temperatures interpreted using steady-state or time-dependent assumptions yield values of 280,000 to 700,000 K. There is some evidence that a range of temperatures consistent with this spread may in fact exist in Alpha Vir. For this limited sample of data, there is no clear evidence for a generic association of low-column-density H2 and the O VI absorption. It is concluded that the O VI absorption refers to regions with temperatures exceeding 250,000 K. The only UV diagnostic for the gas appears to be the O VI features, though C IV may be useful in some cases.

York, D. G.↗

A study of boundary layer transition on outgassing cones in hypersonic flow

Surface heat-transfer rates and pressures were measured at hypersonic speeds on sharp cones at zero angle of attack with and without gas injection. Using the non-injection results for reference data the effects on heating and transition location of surface roughness and injectant rate, distribution and composition were determined. The transition location was sensitive to the injectant distribution. The transition Reynolds numbers were significantly greater when the injectant distribution was constant than with a variable distribution. The measured heat-transfer distribution were also strongly dependent upon the injectant distribution. Transition Reynolds number results obtained during this program with a variable injectant distribution were correlated with a limited amount of data available for a degrading model tested in a different facility. Transitional data with constant injectant distribution were correlated with earlier results. An empirical correlation of heat-transfer reduction due to gas injection in turbulent flow was developed for both distributions tested. Several effects of mass addition on heating and transition, which have been earlier reported, were observed.

Stalmach, C. J., Jr.↗

What We are Learning from (and About) the 10 Plus Year MISR Aerosol Data Record

Having a 10+ year data record from the Multi-angle Imaging SpectroRadiometer (MISR) significantly improves our opportunities to validate the retrieved aerosol optical depth (AOD) and especially particle microphysical property products. It also begins to raise the possibility of using the data to look for changes or even trends, at least on a regional basis. Further, we have had the opportunity to expand the database of wildfire smoke plume heights derived from the multiangle observations. This presentation will review the latest aerosol validation results and algorithm upgrades under consideration by the MISR team, and will summarize the current status of MISR global aerosol air mass type, and regional dust transport and smoke injection height products. The strengths and limitations of these data for constraining aerosol transport model simulations will receive special emphasis.

Kahn, Ralph A.↗

Satellite ocean color measurements

The application of pattern recognition to ocean color data analysis is considered. Due to weight, cost, and data transmission rate limitations, any mapping type remote sensor of ocean color must necessarily collect light from the sea in a finite number of channels. The optical properties of the sea are discussed together with the remote sensing of ocean color, an optical model of natural water, the microscopic optical model, the macroscopic optical model, multiple scattering theory, measurements of subsurface oceanographic parameters, measurements of bulk absorption and scattering properties, measurements of the up- and down-welling light field, and the techniques for ocean color data analysis.

Mccluney, W. R.↗

Constraints on the Galactic Halo Dark Matter from Fermi-LAT Diffuse Measurements

We have performed an analysis of the diffuse gamma-ray emission with the Fermi Large Area Telescope (LAT) in the Milky Way halo region, searching for a signal from dark matter annihilation or decay. In the absence of a robust dark matter signal, constraints are presented. We consider both gamma rays produced directly in the dark matter annihilation/decay and produced by inverse Compton scattering of the e+/e− produced in the annihilation/decay. Conservative limits are derived requiring that the dark matter signal does not exceed the observed diffuse gamma-ray emission. A second set of more stringent limits is derived based on modeling the foreground astrophysical diffuse emission using the GALPROP code. Uncertainties in the height of the diffusive cosmic-ray halo, the distribution of the cosmic-ray sources in the Galaxy, the index of the injection cosmic-ray electron spectrum, and the column density of the interstellar gas are taken into account using a profile likelihood formalism, while the parameters governing the cosmic-ray propagation have been derived from fits to local cosmic-ray data. The resulting limits impact the range of particle masses over which dark matter thermal production in the early universe is possible, and challenge the interpretation of the PAMELA/Fermi-LAT cosmic ray anomalies as the annihilation of dark matter.

DIFFUSE MEASUREMENTS↗

Effects of Mild Hypobaric Hypoxia on Response From Mild Exercise in NASA Exploration Atmosphere Tests

INTRODUCTION: The NASA Exploration Atmosphere study aims to validate a new prebreathe protocol incorporating an alternate habitat atmosphere of 56.5 kPa (8.2psia), 34% O 2 , and 66% N 2 to control and mitigate decompression sickness risk associated with spaceflight extravehicular activities. This alternate atmosphere results in a mild hypoxic environment (PIO 2 of 128 mmHg) that may influence inhabitant physiological responses to exercise. Therefore, the responses to light exercise in relation to the mild hypobaric hypoxic environment were investigated. METHODS: Eight participants (4M/4F; age=38.3±9.0 yr; weight=76.0±13.1 kg; peak aerobic capacity [VO 2 pk]= 3.1±0.7 L/min) were exposed to a mild hypobaric hypoxic environment for 11 days in NASA’s 20-foot hypobaric chamber at Johnson Space Center. Participants alternated test days between a habitat atmosphere of 56.5 kPA/34% O 2 and simulated 6-hour EVA environment, 29.6 kPa/85% O 2 . Participants completed pre-mission graded VO 2 pk tests on a LODE cycle ergometer with ParvoMedics metabolic analyzer. Submaximal aerobic tests were performed pre and during the mission (10-minutes of exercise at a workload of 40% VO 2 pk).Pre-mission, performed submaximal exercise exposed to a breathing air mixture of, 18% O 2 and balance N 2 , to simulate the mildly hypoxic environment within the 20-foot chamber. Linear mixed models (fixed effect: test day; random effects: subject, age) were performed to determine whether physiological responses (oxygen uptake [VO 2 ], carbon dioxide production [VCO 2 ], ventilation [VE], oxygen saturation [SPO 2 ], heart rate [HR], respiratory exchange ratio [RER]) to submaximal exercise performed within the 20-foot hypobaric chamber every 2 days differed from the pre-mission (18% O 2 ) testing. Results are presented as estimated marginal means with lower and upper confidence limits, with significance set to 0.05. RESULTS AND DISCUSSION: Seven of eight participants completed the chamber study. Mixed models for VO 2 , VCO 2 , SpO 2 , HR, and RER indicated negligible impact of the mild hypoxic chamber environment compared to pre-mission testing (all p>0.05).Results for VE indicated a minor impact of chamber environment compared to pre-mission testing (37.0 L/min [30.8, 43.2]), with increased VE at test day 10 (40.4 L/min [34.2, 46.6]; p= 0.029).The aerobic performance data collected suggests limited physiologic responses to mild exercise when performed at normobaric hypoxia and hypobaric hypoxia.

B Siders↗

Motion Magnification to Visualize the Modes of Space Structures

Traditional structural testing involves using accelerometers and strain gages to measure the motion. While this traditional instrumentation suite has proven accurate, it is limited to capture data only in the discrete locations where the transducers are placed. Additionally, applying the instrumentation can be a difficult and labor intensive task. By using video cameras, the motion of the test article – such as a launch vehicle or launch vehicle payload – can be easily captured at any location in the field of view and easily visualized using a post-processing technique called Motion Magnification. It is also much easier to place video cameras to measure motion rather than having to place contact sensors, especially when placement locations can be limited on final flight hardware. Recently, a team of MIT Lincoln Laboratory (MITLL) and NASA Marshall Space Flight Center (MSFC) have been collaborating to use Motion Magnification to measure the dynamics of large space structures. This presentation will detail some of the results of this collaboration.

Eric Colby Stewart↗

Motion Magnification to Visualize the Modes of Space Structures

Traditional structural testing involves using accelerometers and strain gages to measure the motion. While this traditional instrumentation suite has proven accurate, it is limited to capture data only in the discrete locations where the transducers are placed. Additionally, applying the instrumentation can be a difficult and labor intensive task. By using video cameras, the motion of the test article – such as a launch vehicle or launch vehicle payload – can be easily captured at any location in the field of view and easily visualized using a post-processing technique called Motion Magnification. It is also much easier to place video cameras to measure motion rather than having to place contact sensors, especially when placement locations can be limited on final flight hardware. Recently, a team of MIT Lincoln Laboratory (MITLL) and NASA Marshall Space Flight Center (MSFC) have been collaborating to use Motion Magnification to measure the dynamics of large space structures. This presentation will detail some of the results of this collaboration.

Eric Colby Stewart↗

Limits on Arcminute Scale Cosmic Microwave Background Anisotropy with the BIMA Array

We have used the Berkeley-Illinois-Maryland-Association (BIMA) millimeter array outfitted with sensitive cm-wave receivers to search for Cosmic Microwave Background (CMB) anisotropies on arcminute scales. The interferometer was placed in a compact configuration which produces high brightness sensitivity, while providing discrimination against point sources. Operating at a frequency of 28.5 GHz, the FWHM primary beam of the instrument is 6.6 arcminutes. We have made sensitive images of seven fields, five of which where chosen specifically to have low IR dust contrast and be free of bright radio sources. Additional observations with the Owens Valley Radio Observatory (OVRO) millimeter array were used to assist in the location and removal of radio point sources. Applying a Bayesian analysis to the raw visibility data, we place limits on CMB anisotropy flat-band power Q_flat = 5.6 (+3.0, -5.6) uK and Q_flat < 14.1 uK at 68% and 95% confidence. The sensitivity of this experiment to flat band power peaks at a multipole of l = 5470, which corresponds to an angular scale of approximately 2 arcminutes The most likely value of Q_flat is similar to the level of the expected secondary anisotropies.

Holzapfel, W. L.↗

Numerical methods for the simulation of complex multi-body flows with applications for the integrated Space Shuttle vehicle

This project forms part of the long term computational effort to simulate the time dependent flow over the integrated Space Shuttle vehicle (orbiter, solid rocket boosters (SRB's), external tank (ET), and attach hardware) during its ascent mode for various nominal and abort flight conditions. Due to the limitations of experimental data such as wind tunnel wall effects and the difficulty of safely obtaining valid flight data, numerical simulations are undertaken to supplement the existing data base. This data can then be used to predict the aerodynamic behavior over a wide range of flight conditions. Existing computational results show relatively good overall comparison with experiments but further refinement is required to reduce numerical errors and to obtain finer agreements over a larger parameter space. One of the important goals of this project is to obtain better comparisons between numerical simulations and experiments. In the simulations performed so far, the geometry has been simplified in various ways to reduce the complexity so that useful results can be obtained in a reasonable time frame due to limitations in computer resources. In this project, the finer details of the major components of the Space Shuttle are modeled better by including more complexity in the geometry definition. Smaller components not included in early Space Shuttle simulations will now be modeled and gridded.

Chan, William M.↗

Limits on Arcminute-Scale Cosmic Microwave Background Anisotropy at 28.5 GHz

We have used the Berkeley-Illinois-Maryland Association (BIMA) millimeter array outfitted with sensitive centimeter-wave receivers to search for cosmic microwave background (CMB) anisotropies on arcminute scales. The interferometer was placed in a compact configuration that produces high brightness sensitivity, while providing discrimination against point sources. Operating at a frequency of 28.5 GHz, the FWHM primary beam of the instrument is approximately 6'.6. We have made sensitive images of seven fields, four of which where chosen specifically to have low infrared dust contrast and to be free of bright radio sources. Additional observations with the Owens Valley Radio Observatory (OVRO) millimeter array were used to assist in the location and removal of radio point sources. Applying a Bayesian analysis to the raw visibility data, we place limits on CMB anisotropy flat-band power of Q(sub flat) = 5.6(sub -5.6)(exp 3.0) microK and Q(sub flat) < 14.1 microK at 68% and 95% confidence, respectively. The sensitivity of this experiment to flat-band power peaks at a multipole of I = 5470, which corresponds to an angular scale of approximately 2'. The most likely value of Q(sub flat) is similar to the level of the expected secondary anisotropies.

Holzapfel, W. L.↗

Visualization Co-Processing of a CFD Simulation

OVERFLOW, a widely used CFD simulation code, is combined with a visualization system, pV3, to experiment with an environment for simulation/visualization co-processing on a SGI Origin 2000 computer(O2K) system. The shared memory version of the solver is used with the O2K 'pfa' preprocessor invoked to automatically discover parallelism in the source code. No other explicit parallelism is enabled. In order to study the scaling and performance of the visualization co-processing system, sample runs are made with different processor groups in the range of 1 to 254 processors. The data exchange between the visualization system and the simulation system is rapid enough for user interactivity when the problem size is small. This shared memory version of OVERFLOW, with minimal parallelization, does not scale well to an increasing number of available processors. The visualization task takes about 18 to 30% of the total processing time and does not appear to be a major contributor to the poor scaling. Improper load balancing and inter-processor communication overhead are contributors to this poor performance. Work is in progress which is aimed at obtaining improved parallel performance of the solver and removing the limitations of serial data transfer to pV3 by examining various parallelization/communication strategies, including the use of the explicit message passing.

Vaziri, Arsi↗

Real-Time Application of Multi-Satellite Precipitation Analysis for Floods and Landslides

Satellite data acquired and processed in real time now have the potential to provide the spacetime information on rainfall needed to monitor flood and landslide events around the world. This can be achieved by integrating the satellite-derived forcing data with hydrological models and landslide algorithms. Progress in using the TRMM Multi-satellite Precipitation Analysis (TMPA) as input to flood and landslide forecasts is outlined, with a focus on understanding limitations of the rainfall data and impacts of those limitations on flood/landslide analyses. Case studies of both successes and failures will be shown, as well as comparison with ground comparison data sets-- both in terms of rainfall and in terms of flood/landslide events. In addition to potential uses in real-time, the nearly ten years of TMPA data allow retrospective running of the models to examine variations in extreme events. The flood determination algorithm consists of four major components: 1) multi-satellite precipitation estimation; 2) characterization of land surface including digital elevation from NASA SRTM (Shuttle Radar Terrain Mission), topography-derived hydrologic parameters such as flow direction, flow accumulation, basin, and river network etc.; 3) a hydrological model to infiltrate rainfall and route overland runoff; and 4) an implementation interface to relay the input data to the models and display the flood inundation results to potential users and decision-makers, In terms of landslides, the satellite rainfall information is combined with a global landslide susceptibility map, derived from a combination of global surface characteristics (digital elevation topography, slope, soil types, soil texture, and land cover classification etc.) using a weighted linear combination approach. In those areas identified as "susceptible" (based on the surface characteristics), landslides are forecast where and when a rainfall intensity/duration threshold is exceeded. Results are described indicating general agreement with landslide occurrences.

Adler, Robert↗