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At least 1,009 records · Page 56
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

The subphylum Saccharomycotina is a lineage in the fungal phylum Ascomycota that exhibits levels of genomic diversity similar to those of plants and animals. The Saccharomycotina consist of more than 1 200 known species currently divided into 16 families, one order, and one class. Species in this subphylum are ecologically and metabolically diverse and include important opportunistic human pathogens, as well as species important in biotechnological applications. Many traits of biotechnological interest are found in closely related species and often restricted to single phylogenetic clades. However, the biotechnological potential of most yeast species remains unexplored. Although the subphylum Saccharomycotina has much higher rates of genome sequence evolution than its sister subphylum, Pezizomycotina, it contains only one class compared to the 16 classes in Pezizomycotina. The third subphylum of Ascomycota, the Taphrinomycotina, consists of six classes and has approximately 10 times fewer species than the Saccharomycotina. These data indicate that the current classification of all these yeasts into a single class and a single order is an underappreciation of their diversity. Our previous genome-scale phylogenetic analyses showed that the Saccharomycotina contains 12 major and robustly supported phylogenetic clades; seven of these are current families (Lipomycetaceae, Trigonopsidaceae, Alloascoideaceae, Pichiaceae, Phaffomycetaceae, Saccharomycodaceae, and Saccharomycetaceae), one comprises two current families (Dipodascaceae and Trichomonascaceae), one represents the genus Sporopachydermia, and three represent lineages that differ in their translation of the CUG codon (CUG-Ala, CUG-Ser1, and CUG-Ser2). Using these analyses in combination with relative evolutionary divergence and genome content analyses, we propose an updated classification for the Saccharomycotina, including seven classes and 12 orders that can be diagnosed by genome content. This updated classification is consistent with the high levels of genomic diversity within this subphylum and is necessary to make the higher rank classification of the Saccharomycotina more comparable to that of other fungi, as well as to communicate efficiently on lineages that are not yet formally named.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

D–MOPH–25: diverse MOF–molecule pairs for Henry’s constants prediction

Computational methods like grand-canonical Monte Carlo simulations and machine learning (ML) have accelerated metal–organic frameworks (MOF) exploration but are typically limited to a narrow range of adsorbates due to data availability and force field constraints. In this study, we introduce a dataset of diverse MOF–molecule pairs for Henry’s constant prediction, D–MOPH–25, which systematically explores a diverse chemical space by combining 113 molecular adsorbates with over 5000 MOF structures through an active learning process. D–MOPH–25 constitutes the most diverse adsorbate dataset used in any ML study of molecular adsorption in MOFs to date. Our workflow builds a benchmark for predicting Henry’s constants at 300 K, leveraging conformal prediction for uncertainty quantification. Assessment through Shannon entropy and uniform manifold approximation and projection confirms the comprehensiveness of D–MOPH–25 while highlighting the importance of robust classification to filter out unphysical data points in regression tasks. Although future enhancements in model architecture and sampling criteria could improve predictive performance, our dataset already spans the target space using only 2.31% of total possibilities. This comprehensive dataset facilitates assessment of model generalizability across adsorbate species and can establish a foundation for high-throughput MOF screening and ML-driven separation processes.

active learning↗
DOE OSTI2022

WBS 2.1.5.401 - Model Validation and Site Characterization for Early Deployment MHK Sites and Establishment of Wave Classification Scheme

The "Resource Characterization" project delivers the data and tools needed to engineer robust marine renewable energy devices and projects. The project measures resource details at commercially promising sites, runs high resolution models of promising sites and regions, and develops classification schemes that streamline device engineering, project development, and increase investor confidence.

ENGINEERING,TIDAL AND WAVE POWER↗
NASA NTRS2017

Early Season Large-Area Winter Crop Mapping Using MODIS NDVI Data, Growing Degree Days Information and a Gaussian Mixture Model

Knowledge on geographical location and distribution of crops at global, national and regional scales is an extremely valuable source of information applications. Traditional approaches to crop mapping using remote sensing data rely heavily on reference or ground truth data in order to train/calibrate classification models. As a rule, such models are only applicable to a single vegetation season and should be recalibrated to be applicable for other seasons. This paper addresses the problem of early season large-area winter crop mapping using Moderate Resolution Imaging Spectroradiometer (MODIS) derived Normalized Difference Vegetation Index (NDVI) time-series and growing degree days (GDD) information derived from the Modern-Era Retrospective analysis for Research and Applications (MERRA-2) product. The model is based on the assumption that winter crops have developed biomass during early spring while other crops (spring and summer) have no biomass. As winter crop development is temporally and spatially non-uniform due to the presence of different agro-climatic zones, we use GDD to account for such discrepancies. A Gaussian mixture model (GMM) is applied to discriminate winter crops from other crops (spring and summer). The proposed method has the following advantages: low input data requirements, robustness, applicability to global scale application and can provide winter crop maps 1.5-2 months before harvest. The model is applied to two study regions, the State of Kansas in the US and Ukraine, and for multiple seasons (2001-2014). Validation using the US Department of Agriculture (USDA) Crop Data Layer (CDL) for Kansas and ground measurements for Ukraine shows that accuracies of greater than 90% can be achieved in mapping winter crops 1.5-2 months before harvest. Results also show good correspondence to official statistics with average coefficients of determination R(exp. 2) greater than 0.85.

mixture model↗
NASA NTRS2023

The Calipso Version 4.5 Stratospheric Aerosol Subtyping Algorithm

The accurate classification of aerosol types injected into the stratosphere is important to properly characterize their chemical and radiative impacts within the Earth climate system. The updated stratospheric aerosol subtyping algorithm used in the version 4.5 (V4.5) release of the Cloud Aerosol Lidar with Orthogonal Polarization (CALIOP) level 2 data products now delivers more comprehensive and accurate classifications than its predecessor. The original algorithm identified four aerosol subtypes for layers detected above the tropopause: volcanic ash, smoke, sulfate/other, and polar stratospheric aerosol (PSA). In the revised algorithm, sulfates are separately identified as a distinct, homogeneous subtype, and the diffuse, weakly scattering layers previously assigned to the sulfate/other class are recategorized as a fifth “unclassified” subtype. By making two structural changes to the algorithm and revising two thresholds, the V4.5 algorithm improves the ability to discriminate between volcanic ash and smoke from pyrocumulonimbus injections, improves the fidelity of the sulfate subtype, and more accurately reflects the uncertainties inherent in the classification process. The 532 nm lidar ratio for volcanic ash was also revised to a value more consistent with the current state of knowledge. This paper briefly reviews the previous version of the algorithm (V4.1 and V4.2) then fully details the rationale and impact of the V4.5 changes on subtype classification frequency for specific events where the dominant aerosol type is known based on the literature. Classification accuracy is best for volcanic ash due to its characteristically high depolarization ratio. Smoke layers in the stratosphere are also classified with reasonable accuracy, though during the daytime a substantial fraction are misclassified as ash. It is also possible for mixtures of ash and sulfate to be misclassified as smoke. The V4.5 sulfate subtype accuracy is less than that for ash or smoke, with sulfates being misclassified as smoke about one-third of the time. However, because exceptionally tenuous layers are now assigned to the unclassified subtype and the revised algorithm levies more stringent criteria for identifying an aerosol as sulfate, it is more likely that layers labeled as this subtype are in fact sulfate compared to those assigned the sulfate/other classification in the previous data release.

Jason L Tackett↗
DOE OSTI2024

Anomaly Detection and Approximate Similarity Searches of Transients in Real-time Data Streams

Abstract We present Lightcurve Anomaly Identification and Similarity Search ( LAISS ), an automated pipeline to detect anomalous astrophysical transients in real-time data streams. We deploy our anomaly detection model on the nightly Zwicky Transient Facility (ZTF) Alert Stream via the ANTARES broker, identifying a manageable ∼1–5 candidates per night for expert vetting and coordinating follow-up observations. Our method leverages statistical light-curve and contextual host galaxy features within a random forest classifier, tagging transients of rare classes ( spectroscopic anomalies), of uncommon host galaxy environments ( contextual anomalies), and of peculiar or interaction-powered phenomena ( behavioral anomalies). Moreover, we demonstrate the power of a low-latency (∼ms) approximate similarity search method to find transient analogs with similar light-curve evolution and host galaxy environments. We use analogs for data-driven discovery, characterization, (re)classification, and imputation in retrospective and real-time searches. To date, we have identified ∼50 previously known and previously missed rare transients from real-time and retrospective searches, including but not limited to superluminous supernovae (SLSNe), tidal disruption events, SNe IIn, SNe IIb, SNe I-CSM, SNe Ia-91bg-like, SNe Ib, SNe Ic, SNe Ic-BL, and M31 novae. Lastly, we report the discovery of 325 total transients, all observed between 2018 and 2021 and absent from public catalogs (∼1% of all ZTF Astronomical Transient reports to the Transient Name Server through 2021). These methods enable a systematic approach to finding the “needle in the haystack” in large-volume data streams. Because of its integration with the ANTARES broker, LAISS is built to detect exciting transients in Rubin data.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Calorimetric classification of track-like signatures in liquid argon TPCs using MicroBooNE data

The MicroBooNE liquid argon time projection chamber located at Fermilab is a neutrino experiment dedicated to the study of short-baseline oscillations, the measurements of neutrino cross sections in liquid argon, and to the research and development of this novel detector technology. Accurate and precise measurements of calorimetry are essential to the event reconstruction and are achieved by leveraging the TPC to measure deposited energy per unit length along the particle trajectory, with mm resolution. We describe the non-uniform calorimetric reconstruction performance in the detector, showing dependence on the angle of the particle trajectory. Such non-uniform reconstruction directly affects the performance of the particle identification algorithms which infer particle type from calorimetric measurements. This work presents a new particle identification method which accounts for and effectively addresses such non-uniformity. The newly developed method shows improved performance compared to previous algorithms, illustrated by a 93.7% proton selection efficiency and a 10% muon mis-identification rate, with a fairly loose selection of tracks performed on beam data. The performance is further demonstrated by identifying exclusive final states in ν μ CC interactions. While developed using MicroBooNE data and simulation, this method is easily applicable to future LArTPC experiments, such as SBND, ICARUS, and DUNE.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
NASA NTRS1972

Correlation signatures of wet soils and snows

Interpretation, analysis, and development of algorithms have provided the necessary computational programming tools for soil data processing, data handling and analysis. Algorithms that have been developed thus far, are adequate and have been proven successful for several preliminary and fundamental applications such as software interfacing capabilities, probability distributions, grey level print plotting, contour plotting, isometric data displays, joint probability distributions, boundary mapping, channel registration and ground scene classification. A description of an Earth Resources Flight Data Processor, (ERFDP), which handles and processes earth resources data under a users control is provided.

Phillips, M. R.↗
NASA NTRS1988

Controlling basins of attraction in a neural network-based telemetry monitor

The size of the basins of attraction around fixed points in recurrent neural nets (NNs) can be modified by a training process. Controlling these attractive regions by presenting training data with various amount of noise added to the prototype signal vectors is discussed. Application of this technique to signal processing results in a classification system whose sensitivity can be controlled. This new technique is applied to the classification of temporal sequences in telemetry data.

Bell, Benjamin↗
NASA NTRS2015

Data Processing And Machine Learning Methods For Multi-Modal Operator State Classification Systems

This document is intended as an introduction to a set of common signal processing learning methods that may be used in the software portion of a functional crew state monitoring system. This includes overviews of both the theory of the methods involved, as well as examples of implementation. Practical considerations are discussed for implementing modular, flexible, and scalable processing and classification software for a multi-modal, multi-channel monitoring system. Example source code is also given for all of the discussed processing and classification methods.

Machine learning↗
NASA NTRSDate not supplied

Data Science and the Knowledge Discovery Adventure

This talk will cover the important steps involved in the data science and knowledge discovery process: • Initial fact gathering (interview domain experts, review reports, articles, state-of-the-art) • Identify the problem (prediction, classification, statistical analysis, etc.) • Survey supporting data sources • Understand the data (numerical, categorical, text, sampling rate, data quality issues, etc.) • Selecting relevant features and sources • Acquire the data (set up agreements with the data stewards, APIs to download, etc.) • Merge data sources (temporal, spatial, common key, other ontologies...) • Feature Engineering (non linear domain knowledge or physics-based relationships) • Build data processing pipeline (may need to tap into data stream, develop parallel processing algorithm, federated learning etc.) • Build model and test (tune hyper-parameters, cross validation.) • Analyze/Validate results (do the results make sense. Does it answer the original question). • Deploy/Publish (Monitor and assess benefits)

Data science↗
NASA NTRS1981

Ground water use inventory in Minnesota using LANDSAT data

An irrigation ground water use inventory in Sherburne County, Minnesota, was attempted by indirectly locating irrigation wells by determining the location of irrigated lands. Digital classification of LANDSAT MSS imagery was employed using the IDIMS at Goddard Space Flight Center. Single-date classification proved moderately successful after accurate ground truth data were obtained. A combination of supervised and unsupervised classification was used. Multitemporal analysis using August 10 and May 21, 1978 imagery was also attempted. This unsupervised classification proved most successful in identifying crops and irrigated fields.

Beissel, D. R.↗
NASA NTRS1985

Relative Accuracy Assessment of LANDSAT-4 MSS and TM Data for Level 1 Land Cover Inventory

Digital data for the Washington, DC scene simultaneously acquired by the LANDSAT-4 Multispectral Scanner (MSS) and the LANDSAT-4 thematic mapper (TM) was compared. Classification success for the TM and MSS data sets was determined by a per pixel comparison with digitized ground verification data (GVD). These GVD were comprised of Level 7 land cover (developed, agriculture, forest, water, wetlands, and barren) for four USGS 7.5 minute topographic quadrangle maps. The relative improvement in classification success for TM was between 11% and 14%, or about a factor of 1.3, for these data. This represents a meaningful improvement in accuracy for Level 7 land cover categorization for TM relative to MSS, particularly when errors of omission and commission were considered.

Middleton, E. M.↗
NASA NTRS2004

SEP Time-to-Maximum (TTM) Studies and the Ionic Charge States of Solar Heavy Ions

1. We published a report on the TTM method and presented the results at the 28 International Cosmic Ray Conference. Included in this paper were our results on the energy-dependent charge state of Fe in the 200 1 April 15 ground- level event, the largest of Cycle 23. We showed that our results agreed well with direct measurements from SAMPEX in this event. We also presented results for the 2001 April 14 event, one of the largest impulsive events of Cycle 23. 2. We extracted TTM values for protons and ions of various energies in approx. 50 SEP events in Cycle 23, using time profiles measured by ACE, Wind, GOES, IMPS, SOHO, and SAMPEX. This event sample included many large gradual events, as well as several impulsive events. The TTM analyses typically yielded approx. 300 datapoints per event. 3. We used these data to make preliminary event classifications according to: (a) shapes of the rigidity and/or speed dependence of TTMs in each event; (b) behavior of proton TTMs compared to that of heavier ions; and (c) the behavior of Fe TTMs compared to that of lighter Z greater than I ions. 4. We cross-checked proton fluence and TTM values from 8 instruments on 6 satellites, so as to understand the origin of systematic instrument-to-instrument discrepancies. By also comparing the observed proton spectra, it was possible to extract correction factors to the nominal proton energy bins that removed or greatly reduced the instrument-to-instrument spread among proton TTMs. 5. We began comparisons of proton and He-4 TTM values in some particularly well measured, large SEP events measured by IMP8 in Cycles 21 and 22 when the instruments onboard were functioning better. It is hoped that these data will provide a better understanding of event-to-event variation in the functional dependence of TTMs on velocity and rigidity.

Tylka, Allan J.↗
NASA NTRS1977

Flood-plain delineation using multispectral data analysis

The paper explores the application of a remote sensing technique that may permit the determination of flood-plain areas without the extensive work associated with existing techniques. Multispectral scanner data were simulated by utilizing the density differences in a color-infrared transparency for a section of the Navasota River, Texas. The transparency was taken from a low-flying aircraft and covered an area approximating a square mile. The simulated data were processed by an automatic classification technique previously developed in the remote sensing field. The technique used involves the application of the maximum likelihood rule in order to categorize the data being processed. An attempt was made to distinguish between areas known to be in the flood plain and those outside. A reasonabke correlation was found between boundaries based on computer-processed multispectral data and those produced by techniques currently in use.

Harker, G. R.↗
NASA NTRS1986

Physical properties of asteroids

The physical properties of asteroids were studied by telescopic observations and laboratory and theoretical work. Spectrophotometry from 0.3 to 1.1 microns and 1.2, 1.6 and 2.2 micron photometry allow spectral-compositional classification of asteroids. Based on laboratory data and telescopic observations, it was found that infrared measurements at 1.2, 1.6 and 2.2 microns provide a relatively rapid and accurate method for the classification of minor planets and are important in comparing asteroids with meteorites. This technique was proven and employed in an expanded survey of Apollo-Amor-Aten and other unusual asteroids recently scanned by IRAS.

Veeder, G. J.↗
NASA NTRS1987

Remote sensing of earth terrain

A systematic approach for the identification of terrain media such as vegetation canopy, forest, and snow covered fields is developed using the optimum polarimetric classifier. The covariance matrices for the various terrain cover are computed from theoretical models of random medium by evaluating the full polarimetric scattering matrix elements. The optimal classification scheme makes use of a quadratic distance measure and is applied to classify a vegetation canopy consisting of both trees and grass. Experimentally measured data are used to validate the classification scheme. Theoretical probability of classification error using the full polarimetric matrix are compared with classification based on single features including the phase difference between the VV and HH polarization returns. It is shown that the full polarimetric results are optimal and provide better classification performance than single feature measurements.

Kong, J. A.↗