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At least 1,009 records · Page 56

Field expedient stool collection methods for gut microbiome analysis in deployed military environments

ABSTRACT Field expedient devices and protocols for the collection, storage, and shipment of stool samples in deployed settings are needed for the advancement of microbiome research in military health. Relevant assessments include the evaluation of microbiome signatures associated with susceptibility to travelers’ diarrhea and recovery of gut function following infection. However, inherent biases in microbial measurements due to preservatives and sampling methods are unclear and should be assessed for an accurate evaluation of the microbiome. We performed shotgun metagenomic sequencing and compared the microbiome composition in paired fecal samples collected using Flinters Technology Associates (FTA) cards and OMNIgene (OG) Gut tubes, prior to and during international travel, from 49 adult participants, 39 of whom remained asymptomatic and 10 experienced travelers’ diarrhea. Higher concentrations of nucleic acid and sequencing libraries were observed in OG samples. A majority of genera (82.9%) were detected with both methods, and detections of genera limited to one collection method were not highly prevalent across samples and were present in extremely low relative abundances (<0.01%). Differences in beta diversity were largely explained by inter-individuality of microbiome composition, followed by the effect of collection method and timepoint-disease states. Differential abundance analysis indicated that Corynebacterium and Blautia were consistently higher in abundance across all groups with FTA and OG collection, respectively. The observed differences in microbiome composition between methods suggest the need for consistent and standardized protocols within a study. Overall, the data presented here could help guide the future design of fecal microbiome study protocols in field and military deployment settings. IMPORTANCE The assessment of field-deployable methods for fecal sample collection and storage is required to reliably capture samples collected in remote and austere locations. This study describes a comparative metagenomics analysis between samples collected by two different commercially available methods in a military-deployed setting. The results presented here are foundational for the future design of fecal microbiome study protocols in an operational context.

field study↗

Binary frequencies in a sample of globular clusters. II. Sample analysis and comparison to models

Binary stars are predicted to have an important role in the evolution of globular clusters, so we obtained binary fractions for 35 globular clusters that were imaged in the F606W and F814W with the Advanced Camera for Surveys on the Hubble Space Telescope. When compared to the values of prior efforts, we find significant discrepancies, despite each group correcting for contamination effects and having performed the appropriate reliability tests. The most reliable binary fractions are obtained when restricting the binary fraction to q⩾0.5. Our analysis indicates that the range of the binary fractions is nearly an order of magnitude for the lowest dynamical ages, suggesting that there is a broad distribution in the binary fraction at globular cluster formation. Dynamical effects also appear to decrease the core binary fractions by a factor of two over a Hubble time, but this is a weak relationship. We confirm a correlation from previous work that the binary fraction within the core–radius decreases with cluster age, indicating that younger clusters formed with higher binary fractions. The strong radial gradient in the binary fraction with cluster radius appears to be a consequence of dynamical interactions. It is often not present in dynamically young clusters, but is nearly always present in dynamically old clusters.

79 ASTRONOMY AND ASTROPHYSICS↗

Sample selection and testing of separation processes

Phase partitioning, which has become an important tool for the separation and purification of biological materials, was studied. Instruments available for this technique were researched and a countercurrent distribution apparatus, the Biosheff MK2N, was purchased. Various proteins, polysaccharides and cells were studied as models to determine operating procedures and conditions for this piece of equipment. Results were compared with those obtained from other similar equipment, including a nonsynchronous coil planet centrifuge device. Additionally, work was done with affinity ligands attached to PEG, which can further enhance the separation capabilities of phase partitioning.

Karr, L. J.↗

Automated Rock Identification for Future Mars Exploration Missions

A key task for human or robotic explorers on the surface of Mars is choosing which particular rock or mineral samples should be selected for more intensive study. The usual challenges of such a task are compounded by the lack of sensory input available to a suited astronaut or the limited downlink bandwidth available to a rover. Additional challenges facing a human mission include limited surface time and the similarities in appearance of important minerals (e.g. carbonates, silicates, salts). Yet the choice of which sample to collect is critical. To address this challenge we are developing science analysis algorithms to interface with a Geologist's Field Assistant (GFA) device that will allow robotic or human remote explorers to better sense and explore their surroundings during limited surface excursions. We aim for our algorithms to interpret spectral and imaging data obtained by various sensors. The algorithms, for example, will identify key minerals, rocks, and sediments from mid-IR, Raman, and visible/near-IR spectra as well as from high resolution and microscopic images to help interpret data and to provide high-level advice to the remote explorer. A top-level system will consider multiple inputs from raw sensor data output by imagers and spectrometers (visible/near-IR, mid-IR, and Raman) as well as human opinion to identify rock and mineral samples.

Gulick, V. C.↗

Effects of finite sampling on fatigue damage estimation of wind turbine components: A statistical study

The variability of the wind turbine loads complicates fatigue assessment in the design phase, as performing simulations covering the entire lifetime is computationally expensive. The current work provides important information for assessing the uncertainty in fatigue damage estimation due to finite data. Here we study the sample size effect on mean, variance, and skewness of damage in each wind bin, identify the important wind bins, and study the uncertainty propagation from each wind bin to the lifetime damage using 3600 aeroelastic simulations and bootstrapping. To achieve less than 1% error in the damage estimation across all load channels in the current case study, at least 100 turbulence seeds are needed. Damage in different wind bins follows a lognormal distribution when using the conventional approach of six seeds. The provided insights and information allow the designer to achieve a specific level of accuracy for a given computational cost using strategic bin sampling.

17 WIND ENERGY↗

Climatic Controls on Residual Contaminants Under Sustainable Remediation - 18699

We investigate the impact of climate change on residual contaminants in soil and groundwater under sustainable remediation. We illustrate seven climate change scenarios which mimic shifts in the precipitation regime as well as the failure of the source-zone cap. We evaluate different performance metrics including contaminant concentrations at multiple wells and export to a creek. The approach is demonstrated by simulating the tritium plume migration at the Savannah River Site F-Area, USA. The cap integrity is critical not only to reduce the well concentrations and export but also to reduce the uncertainty associated with the climatic variability. Sampling or in situ monitoring near the source zone is important for the early detection of plume mobility changes. Realistic hydrological models are necessary to evaluate the trade-offs (mobility vs dilution)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Delayed-Gamma Energy Biasing with Exact Energy Sampling in MCNP 6.2.0

Characterization of delayed-particle signatures is of the utmost importance for detecting, identifying, and quantifying special nuclear material (SNM). Various non-destructive assay (NDA) techniques used in nuclear material safeguards rely on characteristic gamma-ray or neutron emissions to infer properties of a material. The all-particle, all-energy Monte-Carlo radiation transport code MCNP6 is capable of simulating delayed-particle signatures from SNM in addition to modeling the transport of emitted particles to a detector or other instrument. In some cases, NDA techniques require the measurement of low probability emissions from a given material. In physical scenarios, this problem can be bypassed by longer count-times or may be simply irrelevant due to the mass, and therefore the total activity, of the material being measured. However, when applying the Monte-Carlo method to such scenarios, sampling of low probability emissions requires a large number of histories to converge to a statistically acceptable solution. To address this issue, the delayed-neutron and gamma energy biasing feature was introduced in MCNP6 by H. Armstrong et al. in 2013 which allows the user to set up energy windows in which delayed-particle emission sampling can be adjusted. For delayed-gamma sampling, this biasing method was based on the bin-wise structure of gamma emission data for both the multi-bin gamma and line-emission sampling modes. Recent improvements have been made to the line-emission sampling algorithm which upgrade the previous mini-bin sampling treatment to an exact energy-line treatment. This upgrade was not compatible with the biasing method implemented by H. Armstrong et al. due to the sampled data no longer having a bin-wise structure in line-emission mode. For this reason the delayed-gamma energy biasing feature has been rewritten to support the exact line-sampling treatment. This paper provides a description of the delayed-gamma energy biasing (DGEB) feature in MCNP6 as well as results and discussion for a gamma-ray spectroscopy example used to demonstrate the biasing utility. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Illustrating galaxy–halo connection in the DESI era with illustrisTNG

ABSTRACT We employ the hydrodynamical simulation illustrisTNG to inform the galaxy–halo connection of the Luminous Red Galaxy (LRG) and Emission Line Galaxy (ELG) samples of the Dark Energy Spectroscopic Instrument (DESI) survey at redshift z ∼ 0.8. Specifically, we model the galaxy colours of illustrisTNG and apply sliding DESI colour–magnitude cuts, matching the DESI target densities. We study the halo occupation distribution (HOD) model of the selected samples by matching them to their corresponding dark matter haloes in the illustrisTNG dark matter run. We find the HOD of both the LRG and ELG samples to be consistent with their respective baseline models, but also we find important deviations from common assumptions about the satellite distribution, velocity bias, and galaxy secondary biases. We identify strong evidence for concentration-based and environment-based occupational variance in both samples, an effect known as ‘galaxy assembly bias’. The central and satellite galaxies have distinct dependencies on secondary halo properties, showing that centrals and satellites have distinct evolutionary trajectories and should be modelled separately. These results serve to inform the necessary complexities in modelling galaxy–halo connection for DESI analyses and also prepare for building high-fidelity mock galaxies. Finally, we present a shuffling-based clustering analysis that reveals a 10–15 ${{\ \rm per\ cent}}$ excess in the LRG clustering of modest statistical significance due to secondary galaxy biases. We also find a similar excess signature for the ELGs, but with much lower statistical significance. When a larger hydrodynamical simulation volume becomes available, we expect our analysis pipeline to pinpoint the exact sources of such excess clustering signatures.

79 ASTRONOMY AND ASTROPHYSICS↗

Aluminum Clad Spent Nuclear Fuel Task 4: Performance of Aluminum SNF in Dry Storage Experiment Test Plan

This document presents the activities to be performed in support of understanding the performance of aluminum spent nuclear fuel (ASNF) in dry storage. These activities will visually examine and acquire baseline samples of as-irradiated ATR fuel assembly components to determine fuel condition and the morphology of the aluminum oxyhydroxides present on the fuel external surfaces. Because the boehmite phase of oxyhydroxide is projected to be a significant contributor to radiolytic hydrogen production and general corrosion, being able to quantify its presence is of major importance to long term storage of aluminum spent nuclear fuel. Baseline samples will be taken from irradiated end adapters, removed from ATR SNF elements, stored in the ATR Canal. These will be transferred to Idaho National Laboratory (INL) Materials and Fuels Complex (MFC) to perform non-destructive and destructive testing to determine the degree of hydration of the wet-stored aluminum components prior to drying and air storage. Examination of the dry stored SNF at Idaho Nuclear Technology and Engineering Center (INTEC) in CPP-603 Irradiated Fuel Storage Facility (IFSF) will allow the opportunity to identify gross degradation and as conditions permit, sample the surface oxide on fueled and un-fueled portions of the stored assemblies. The information resulting from analysis of the ATR Canal samples will be used to support validation of surrogate samples prepared under Task 6, sample surrogate preparation, and used in Task 1, oxyhydroxide layer behavior and chemistry, Task 2, oxide layer radiolytic gas generation, and Task 5, oxide layer response to drying. Surface oxide samples collected from SNF in IFSF dry storage will SNF dry storage prediction modeling from Task 3, sealed and vented system episodic breathing and gas generation prediction.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Evaluating Core Quality for a Mars Sample Return Mission

Sample return missions, including the proposed Mars Sample Return (MSR) mission, propose to collect core samples from scientifically valuable sites on Mars. These core samples would undergo extreme forces during the drilling process, and during the reentry process if the EEV (Earth Entry Vehicle) performed a hard landing on Earth. Because of the foreseen damage to the stratigraphy of the cores, it is important to evaluate each core for rock quality. However, because no core sample return mission has yet been conducted to another planetary body, it remains unclear as to how to assess the cores for rock quality. In this report, we describe the development of a metric designed to quantitatively assess the mechanical quality of any rock cores returned from Mars (or other planetary bodies). We report on the process by which we tested the metric on core samples of Mars analogue materials, and the effectiveness of the core assessment metric (CAM) in assessing rock core quality before and after the cores were subjected to shocking (g forces representative of an EEV landing).

Mars samples↗

Auto-Gopher: A Wire-Line Rotary-Hammer Ultrasonic Drill

Developing technologies that would enable NASA to sample rock, soil, and ice by coring, drilling or abrading at a significant depth is of great importance for a large number of in-situ exploration missions as well as for earth applications. Proven techniques to sample Mars subsurface will be critical for future NASA astrobiology missions that will search for records of past and present life on the planet, as well as, the search for water and other resources. A deep corer, called Auto-Gopher, is currently being developed as a joint effort of the JPL's NDEAA laboratory and Honeybee Robotics Corp. The Auto-Gopher is a wire-line rotary-hammer drill that combines rock breaking by hammering using an ultrasonic actuator and cuttings removal by rotating a fluted bit. The hammering mechanism is based on the Ultrasonic/Sonic Drill/Corer (USDC) that has been developed as an adaptable tool for many of drilling and coring applications. The USDC uses an intermediate free-flying mass to transform the high frequency vibrations of the horn tip into a sonic hammering of a drill bit. The USDC concept was used in a previous task to develop an Ultrasonic/Sonic Ice Gopher. The lessons learned from testing the ice gopher were implemented into the design of the Auto-Gopher by inducing a rotary motion onto the fluted coring bit. A wire-line version of such a system would allow penetration of significant depth without a large increase in mass. A laboratory version of the corer was developed in the NDEAA lab to determine the design and drive parameters of the integrated system. The design configuration lab version of the design and fabrication and preliminary testing results are presented in this paper

life dectection↗

The Regolith Biters: A Divide-And-Conquer Architecture for Sample-Return Missions

The collective interaction of simple systems can be leveraged to attain complex goals. Based on this principle, we envision space system architectures where the core functional components are decoupled, autonomous, and cooperative. We aim to pursue this vision in the context of small-body sample-return missions. After all, no experimental study sheds more light into our understanding of the origin and evolution of the Solar System than the analysis of samples from asteroids and comets. We also believe that their study is important from a strategic perspective: meteorite impacts pose a direct and credible threat to life on Earth, and the development of contingency small-body deflection missions presupposes some knowledge of the target body. The current architectural paradigm for sample-return missions is centered around a design where spacecraft and sampling device are merged into a single, complex system. We argue that this monolithic approach couples the navigation and sample-collection problems, making both more difficult. In contrast, we propose a decoupled system based on the coordinated interaction between a spacecraft and a collective of small, simple devices - the Regolith Biters (RBs). A spacecraft carrying a number of RBs would travel to the vicinity of a small body. From a favorable vantage point, and while remaining within a safe distance in a non-colliding trajectory, it would release the RBs towards the target body. Upon encountering the body, they would bite the regolith (thus retaining a sample), and eject back to orbit. The spacecraft, being endowed with appropriate navigation and tracking capabilities, would rendezvous with and collect those RBs within its reach, and bring them back to Earth. Separating the navigation and sampling concerns removes the need for proximity operations with the small body-the stage in current architectures that carries the most challenges and risks. Eliminating the need for proximity operations brings back to the discussion the exploration of exciting prospects, like highly active comets, fast-rotating bodies, and binary systems. Distributing the sampling problem among a collective of agents provides the opportunity to sample multiple regions in a single mission. It also provides robustness to various environmental conditions, and may enable the distributed, in situ characterization of the body. In the search for reliability, current architectures rely on complexity: an elaborate system should succeed at once. We rely on numbers: a given agent may fail at any stage, but success is attained by the collective.

Asteroids↗

Iterating on a Design – Further Developments in the Evolution of the Ballistic Limit Equations for the Mars Sample Return Project

The goal of the Mars Sample Return–Capture, Containment, and Return System Project is to retrieve samples launched from the Martian surface and return them to Earth for detailed analysis. An important part of this project is the design of the system’s micrometeoroid protection system, which protects the Earth Entry System and the collected samples during their journey back to Earth. As mission parameters and the micrometeoroid and orbital debris threat became better understood, the design of the micrometeoroid protection system evolved. A key element used in the shield development process is the ballistic limit equation, which is an equation that is used to determine whether or not a particular structural element or system will end up in a failed state as a result of a specified impact. As the design of the Earth Entry System and the micrometeoroid protection system evolved, a new set of ballistic limit equations was needed to better predict and assess the performance of developing shield system designs in anticipation of possible damage from micrometeoroid and orbital debris particle impacts. This paper provides a summary of how a set of initial BLEs were either extended or modified so that the resulting equations were better suited to new types of target configurations being considered, as well as how additional ballistic limit equations were developed where none previously existed.

William P Schonberg↗

Exciton relaxation in carbon nanotubes via electronic-to-vibrational energy transfer

Covalent functionalization of semiconducting single-wall carbon nanotubes (CNTs) introduces new photoluminescent emitting states. These states are spatially localized around functionalization sites and strongly red-shifted relative to the emission commonly observed from the CNT band-edge exciton state. A particularly important feature of these localized exciton states is that because the exciton is no longer free to diffusively sample photoluminescent quenching sites along the CNT length, its lifetime is significantly extended. We have recently demonstrated that an important relaxation channel of such localized excitons is the electronic-to-vibrational energy transfer (EVET). This process is analogous to the Förster resonance energy transfer except the final state of this process is not electronically, but vibrationally excited molecules of the surrounding medium (e.g., solvent). In this work, we develop a theory of EVET for a nanostructure of arbitrary shape and apply it to the specific case of EVET-mediated relaxation of defect-localized excitons in a covalently functionalized CNT. Here, the resulting EVET relaxation times are in good agreement with experimental data.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Evidence for Impact Shock Melting in CM and CI Chondrite Regolith Samples

C class asteroids frequently exhibit reflectance spectra consistent with thermally metamorphosed carbonaceous chondrites, or a mixture of phyllosilicate-rich material along with regions where they are absent. One particularly important example appears to be near-Earth asteroid 1999 JU3, the target of the Hayabusa II sample return mission [1], although not all spectra indicate this. In fact most spectra of 1999 JU3 are featureless, suggesting a heterogeneous regolith. Here we explore an alternative cause of dehydration of regolith of C class asteroids - impact shock melting. Impact shock melting has been proposed to explain some mineralogical characteristics of CB chondrites, but has not been considered a major process for hydrous carbonaceous chondrites. What evidence is there for significant shock melting in the very abundant CMs, or less abundant but still important CI chondrites?

Zolensky, Michael↗

Regional and Localized Deposits on the Moon

Earth-based telescopic remote sensing studies have provided important information concerning lunar pyroclastic deposits. Combined with the returned lunar sample studies and analyses of lunar photography, we have learned a great deal about the nature and origin of these explosive volcanic materials. Lunar pyroclastic deposits are more numerous, extensive, and widely distributed than previously thought. Two generic classes of lunar pyroclastics have been identified, regional and localized. From the former, two separate spectral compositional groups have been identified; one is dominated by Fe(2+)-bearing glasses, the other is composed of ilmenite-rich black spheres. Comparatively, three separate spectral groups have been identified among the localized deposits: highlands-rich, olivine-rich, and mare-rich. Returned sample studies and the recently collected Galileo and Clementine data also corroborate these findings. Albedo data and multispectral imagery suggest that the thicker core deposits of the regional dark mantle deposits (RDMD) are surrounded by pyroclastic debris and subjacent highlands material. The presence of a major component of pyroclastic debris in the regolith surrounding the core regional deposits has important implications for the resource potential of these materials. Both telescopic and orbital spectra indicate that the regional pyroclastic deposits are rich in iron, titanium and oxygen-bearing minerals. Particle shapes vary from simple glass spheres to compound droplets with quench crystallized textures. Their small grain size and friability make them ideal indigenous feedstock. Compared to other resource feedstock sources on the Moon, these pyroclastic materials may be the best oxygen resource on the Moon.

Coombs, Cassandra R.↗

SPADE: A Rock Crushing and Sample Handling System Developed for Mars Missions

Access to the interior of rocks on Mars is an important goal for understanding Mars petrology and geologic history. The spectral signature of the potentially diverse mineralogy of rocks on Mars is veiled by the ubiquitous dust and may be further hidden by weathered rind. We have developed a rock crusher and sample distribution system under the auspices of NASA s PIDDP program. We call it the SPADE : the Sample Processing and Distribution Experiment. Its purpose is to access the interiors of rocks on Mars and prepare samples for analysis by a suite of in situ instruments.

Hansen, Candice J.↗

Complete resolution across the neodymium/samarium isotopic envelope with a liquid sampling‐atmospheric pressure glow discharge — Orbitrap mass spectrometer

Rationale Nd and Sm isotope ratios play an important role in geological dating and as nuclear forensic signatures; however, the overlap of the respective 144, 148, 150 Nd/Sm isobars requires prior separations to be performed before analysis on typical MS platforms. The work presented here overcomes these isobaric interferences using ultrahigh‐mass resolution to alleviate interference without prior chemical separations. Methods A liquid sampling‐atmospheric pressure glow discharge ion source was coupled to a standard, QExactive Focus Orbitrap mass spectrometer, providing a mass resolution of ~80 k. A Spectroswiss FTMS booster X2 data acquisition package was used to collect extended transients, providing much higher mass resolution; ~230 k and ~600 k are employed here for Nd and Sm isotopes. Results While the standard Orbitrap resolution is far greater than typical “atomic” MS platforms, it was insufficient to alleviate all isobars. The use of a resolution of ~230 k resulted in baseline separation across the entire isotopic envelope for both Nd and Sm. Isotope ratios obtained from Nd:Sm mixtures using high‐resolution were equivalent to those found for individual‐element solutions, while isotope ratios obtained at a resolution of ~80 k (standard for the OEM data system) showed large deviations. Conclusions Use of ultrahigh‐resolution is an attractive alternative to extensive chemical separations to alleviate severe isobaric interferences. Sufficient mass resolution greatly reduces/eliminates the need for sample manipulations (separations) before analysis while reducing costs and total analysis times.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗