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NASA NTRS2015

PISCES High Contrast Integral Field Spectrograph Simulations and Data Reduction Pipeline

The PISCES (Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies) is a lenslet array based integral field spectrograph (IFS) designed to advance the technology readiness of the WFIRST (Wide Field Infrared Survey Telescope)-AFTA (Astrophysics Focused Telescope Assets) high contrast Coronagraph Instrument. We present the end to end optical simulator and plans for the data reduction pipeline (DRP). The optical simulator was created with a combination of the IDL (Interactive Data Language)-based PROPER (optical propagation) library and Zemax (a MatLab script), while the data reduction pipeline is a modified version of the Gemini Planet Imager's (GPI) IDL pipeline. The simulations of the propagation of light through the instrument are based on Fourier transform algorithms. The DRP enables transformation of the PISCES IFS data to calibrated spectral data cubes.

The PISCES (Prototype Imaging Spectrograph for Cor↗

NASA NTRS1995

Object Detection in Natural Backgrounds Predicted by Discrimination Performance and Models

In object detection, an observer looks for an object class member in a set of backgrounds. In discrimination, an observer tries to distinguish two images. Discrimination models predict the probability that an observer detects a difference between two images. We compare object detection and image discrimination with the same stimuli by: (1) making stimulus pairs of the same background with and without the target object and (2) either giving many consecutive trials with the same background (discrimination) or intermixing the stimuli (object detection). Six images of a vehicle in a natural setting were altered to remove the vehicle and mixed with the original image in various proportions. Detection observers rated the images for vehicle presence. Discrimination observers rated the images for any difference from the background image. Estimated detectabilities of the vehicles were found by maximizing the likelihood of a Thurstone category scaling model. The pattern of estimated detectabilities is similar for discrimination and object detection, and is accurately predicted by a Cortex Transform discrimination model. Predictions of a Contrast- Sensitivity- Function filter model and a Root-Mean-Square difference metric based on the digital image values are less accurate. The discrimination detectabilities averaged about twice those of object detection.

Ahumada, A. J., Jr.↗

NASA NTRS1988

Multifrequency imaging radar polarimetry: Depolarisation of radar echoes at three wavelengths

It is shown that high resolution imaging radar polarimeters can describe depolarization effects in great detail by measuring the complete Stokes matrix for small regions on the Earth's surface, permitting to distinguish between coherent polarization transformation by the surface and diffuse interactions that randomize the polarization state of the received wave. Multiwavelength polarimeter observations of a variety of types of terrain, including images of the coherent and diffuse parts of the received signal are presented. The diffuse image, in particular, is highly indicative of small-scale surface roughness, an effect illustrated by analyzing a set of polarimeter images acquired over lava fields of varying roughness.

Zebker, H. A.↗

NASA NTRS1992

Tests of a simple data merging algorithm for the GONG project

The GONG (Global Oscillation Network Group) project proposes to reduce the impact of diurnal variations on helioseismic measurements by making long-term observations of solar images from six sites placed around the globe. The sun will be observed nearly constantly for three years, resulting in the acquisition of l+ terabyte of image data. To use the solar network to maximum advantage, the images from the sites must be combined into a single time series to determine mode frequencies, amplitudes, and line widths. Initial versions of combined, i.e., merged, time series were made using a simple weighted average of data from different sites taken simultaneously. In order to accurately assess the impact of the data merge on the helioseismic measurements, a set of artificial solar disk images was made using a standard solar model and containing a well known set of oscillation modes and frequencies. This undegraded data set and data products computed from it were used to judge the relative merits of various data merging schemes. The artificial solar disk images were subjected to various instrumental and atmospheric degradations, dependent on site and time, in order to create a set of images simulating those likely to be taken at the site. The degraded artificial solar disk images for the six observing sites were combined in various ways to form merged time series of images and mode coefficients. Various forms of a weighted average were used, including an equally-weighted average, an average with weights dependent upon air mass and averages with weights dependent on various quality assurance parameters. Both the undegraded solar disk image time series and several time series made up of various combinations of the degraded solar disk images from the six sites were subjected to standard helioseismic measurement processing. This processing consisted of coordinate remapping, detrending, spherical harmonic transformation, computation of power series for the oscillation mode coefficients, and mode frequency identification. Visual and statistical evaluation of the merged data sets themselves and differences between the merged and undegraded data set shows good agreement between the two data sets. Some slight differences in image scale and registration appear between the undegraded data set and the various merged data sets. In the set of power series made from the mode coefficients of the merged data sets, some power leakage is observed into the background and into slightly lower l-value modes, especially at higher l-value mode frequencies. The results of the comparison of time series and mode oscillation frequencies of the undegraded data with those of the data merged using weighted averages indicate that, at least for p-mode solar oscillations, a weighted average of either the detrended remapped images or the mode coefficients gives good determination of the mode frequencies and adequate-to-good determination of the amplitudes and widths of the mode frequency lines. This conclusion is most advantageous to the analysis of the massive amounts of data to be received by the GONG network.

Williams, W. E.↗

NASA NTRS2014

Development and Characterization of Embedded Sensory Particles Using Multi-Scale 3D Digital Image Correlation

A method for detecting fatigue cracks has been explored at NASA Langley Research Center. Microscopic NiTi shape memory alloy (sensory) particles were embedded in a 7050 aluminum alloy matrix to detect the presence of fatigue cracks. Cracks exhibit an elevated stress field near their tip inducing a martensitic phase transformation in nearby sensory particles. Detectable levels of acoustic energy are emitted upon particle phase transformation such that the existence and location of fatigue cracks can be detected. To test this concept, a fatigue crack was grown in a mode-I single-edge notch fatigue crack growth specimen containing sensory particles. As the crack approached the sensory particles, measurements of particle strain, matrix-particle debonding, and phase transformation behavior of the sensory particles were performed. Full-field deformation measurements were performed using a novel multi-scale optical 3D digital image correlation (DIC) system. This information will be used in a finite element-based study to determine optimal sensory material behavior and density.

Cornell, Stephen R.↗

NASA NTRS1990

Cirrus cloud characteristics derived from volume imaging lidar, high spectral resolution lidar, HIS radiometer, and satellite

Preliminary measurement results are presented from the Cirrus Remote Sensing Pilot Experiment which used a unique suite of instruments to simultaneously retrieve cirrus cloud visible and IR optical properties, while addressing the disparities between satellite volume averages and local point measurements. The experiment employed a ground-based high resolution interferometer sounder (HIS) and a second Fourier transform spectrometer to measure the spectral radiance in the 4-20 micron band, a correlated high spectral resolution lidar, a volume imaging lidar, a CLASS radiosonde system, the Scripps Whole Sky Imager, and multispectral VAS, HIRS, and AVHRR satellite data from polar orbiting and geostationary satellites. Data acquired during the month long experiment included continuous daytime monitoring with the Whole Sky Imager.

Grund, Christian J.↗

DOE OSTI2023

DOLCE: A Model-Based Probabilistic Diffusion Framework for Limited-Angle CT Reconstruction

Limited-Angle Computed Tomography (LACT) is a non-destructive evaluation technique used in a variety of applications ranging from security to medicine. The limited angle coverage in LACT is often a dominant source of severe artifacts in the reconstructed images, making it a challenging inverse problem. We present DOLCE, a new deep model-based framework for LACT that uses a conditional diffusion model as an image prior. Diffusion models are a recent class of deep generative models that are relatively easy to train due to their implementation as image denoisers. DOLCE can form high-quality images from severely under-sampled data by integrating data-consistency updates with the sampling updates of a diffusion model, which is conditioned on the transformed limited-angle data. We show through extensive experimentation on several challenging real LACT datasets that, the same pre-trained DOLCE model achieves the SOTA performance on drastically different types of images. Additionally, we show that, unlike standard LACT reconstruction methods, DOLCE naturally enables the quantification of the reconstruction uncertainty by generating multiple samples consistent with the measured data.

Kim, Hyojin↗

DOE OSTI2025

Predicting High‐Resolution Spatial and Spectral Features in Mass Spectrometry Imaging with Machine Learning and Multimodal Data Fusion

Recent advancements in molecular Mass Spectrometry Imaging have sparked interest in integrating high spatial resolution methods with molecular mass-spectrometry-based chemical imaging. Fusion-based algorithms have proven effective in generating high spatial-resolution molecular mass spectra. However, a significant challenge stems from the differing physical mechanisms underlying image generation and data upsampling techniques, potentially leading to discrepancies in integrated information channels. Integrating physical constraints into data processing workflows is essential to tackle this issue. In this study, we propose an innovative approach that merges data from Fourier transform ion cyclotron resonance (FTICR), time-of-flight matrix-assisted laser desorption/ionization, and time-of-flight secondary ion mass spectrometry imaging techniques. By leveraging FT-ICR's unparalleled spectral resolution and ToF-SIMS's exceptional spatial resolution, we achieve submicron spatial resolution, enabling the observation of intact molecular species with remarkable spectral precision. Canonical correlation analysis is employed to incorporate physical constraints. Through sophisticated image processing and machine learning techniques, the results of this fusion hold significant promise for advancing our comprehension of complex systems and unveiling concealed molecular intricacies.

canonical correlation analysis↗

DOE OSTI2019

Deep learning analysis of defect and phase evolution during electron beam-induced transformations in WS2

Abstract Recent advances in scanning transmission electron microscopy (STEM) allow the real-time visualization of solid-state transformations in materials, including those induced by an electron beam and temperature, with atomic resolution. However, despite the ever-expanding capabilities for high-resolution data acquisition, the inferred information about kinetics and thermodynamics of the process, and single defect dynamics and interactions is minimal. This is due to the inherent limitations of manual ex situ analysis of the collected volumes of data. To circumvent this problem, we developed a deep-learning framework for dynamic STEM imaging that is trained to find the lattice defects and apply it for mapping solid state reactions and transformations in layered WS 2 . The trained deep-learning model allows extracting thousands of lattice defects from raw STEM data in a matter of seconds, which are then classified into different categories using unsupervised clustering methods. We further expanded our framework to extract parameters of diffusion for sulfur vacancies and analyzed transition probabilities associated with switching between different configurations of defect complexes consisting of Mo dopant and sulfur vacancy, providing insight into point-defect dynamics and reactions. This approach is universal and its application to beam-induced reactions allows mapping chemical transformation pathways in solids at the atomic level.

36 MATERIALS SCIENCE↗

NASA NTRS1986

A Fourier-based textural feature extraction procedure

A procedure is presented to discriminate and characterize regions of uniform image texture. The procedure utilizes textural features consisting of pixel-by-pixel estimates of the relative emphases of annular regions of the Fourier transform. The utility and derivation of the features are described through presentation of a theoretical justification of the concept followed by a heuristic extension to a real environment. Two examples are provided that validate the technique on synthetic images and demonstrate its applicability to the discrimination of geologic texture in a radar image of a tropical vegetated area.

Stromberg, W. D.↗

NASA NTRS2018

Orion Optical Navigation Progress Toward Exploration: Mission 1

Optical navigation of human spacecraft was proposed on Gemini and implemented successfully on Apollo as a means of autonomously operating the vehicle in the event of lost communication with controllers on Earth. It shares a history with the "method of lunar distances" that was used in the 18th century and gained some notoriety after its use by Captain James Cook during his 1768 Pacific voyage of the HMS Endeavor. The Orion emergency return system utilizing optical navigation has matured in design over the last several years, and is currently undergoing the final implementation and test phase in preparation for Exploration Mission 1 (EM-1) in 2019. The software development is being worked as a Government Furnished Equipment (GFE) project delivered as an application within the Core Flight Software of the Orion camera controller module. The mathematical formulation behind the initial ellipse fit in the image processing is detailed in Christian. The non-linear least squares refinement then follows the technique of Mortari as an estimation process of the planetary limb using the sigmoid function. The Orion optical navigation system uses a body fixed camera, a decision that was driven by mass and mechanism constraints. The general concept of operations involves a 2-hour pass once every 24 hours, with passes specifically placed before all maneuvers to supply accurate navigation information to guidance and targeting. The pass lengths are limited by thermal constraints on the vehicle since the OpNav attitude generally deviates from the thermally stable tail-to-sun attitude maintained during the rest of the orbit coast phase. Calibration is scheduled prior to every pass due to the unknown nature of thermal effects on the lens distortion and the mounting platform deformations between the camera and star trackers. The calibration technique is described in detail by Christian, et al. and simultaneously estimates the Brown-Conrady coefficients and the Star Tracker/Camera interlock angles. Accurate attitude information is provided by the star trackers during each pass. Figure 1 shows the various phases of lunar return navigation when the vehicle is in autonomous operation with lost ground communication. The midcourse maneuvers are placed to control the entry interface conditions to the desired corridor for safe landing. The general form of optical navigation on Orion is where still images of the Moon or Earth are processed to find the apparent angular diameter and centroid in the camera focal plane. This raw data is transformed into range and bearing angle measurements using planetary data and precise star tracker inertial attitude. The measurements are then sent to the main flight computer's Kalman filter to update the onboard state vector. The images are, of course, collected over an arc to converge the state and estimate velocity. The same basic technique was used by Apollo to satisfy loss-of-comm, but Apollo used manual crew sightings with a vehicle-integral sextant instead of autonomously processing optical imagery. The software development is past its Critical Design Review, and is progressing through test and certification for human rating. In support of this, a hardware-in-the-loop test rig was developed in the Johnson Space Center Electro-Optics Lab to exercise the OpNav system prior to integrated testing on the Orion vehicle. Figure 2 shows the rig, which the test team has dubbed OCILOT (Orion Camera In the Loop Optical Testbed). Analysis performed to date shows a delivery that satisfies an allowable entry corridor as shown in Figure 3.

Holt, Greg N.↗

DOE OSTI2019

Biomarker Mapping on Skin Tape Strips Using MALDI Mass Spectrometry Imaging

Keratinocyte organization and biochemistry are important in forming the skin’s protective barrier. Intrinsic and extrinsic factors can affect skin barrier function at the cellular and molecular levels. Matrix-assisted laser desorption/ionization (MALDI) mass spectrometric imaging, a technique which combines both molecular aspects and histological details, has proven to be a valuable method in various disciplines including pharmacology, dermatology and cosmetology. It typically requires ex vivo samples, prepared following frozen tissue sectioning. This paper demonstrates the feasibility of performing MALDI analysis on tape strips collected non-invasively on skin. The aim is to obtain molecular imaging of corneocytes on tapes towards novel biological insights. Tapes were collected from two skin sites (volar forearm and cheek) of human volunteers. Ten molecules relating to skin barrier function were detected with a single mode of acquisition at high spatial resolution with a 7 T MALDI-Fourier transform ion cyclotron resonance (FTICR) instrument. The method sensitivity was adequate to create molecular maps which could be overlaid on transmission microscopy images of the same area of the tape. Analysis of the molecular distributions from tapes at the two skin sites was consistent with the known skin properties of the two sites, confirming the validity of the observations. Hierarchical clustering analysis was used to differentiate corneocyte populations based on their molecular profiles. Furthermore, morphological analysis provided a new way of considering statistical populations of corneocytes on the same tape, rather than measuring a single averaged value, providing additional useful information relating to their structure-function relationship. .

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2020

Hidden Subsurface Reconstruction and Its Atomic Origins in Layered Oxide Cathodes

Structural transformations near surfaces of solid-state materials underpin functional mechanisms of a broad range of applications including catalysis, memory, and energy storage. It has been a long-standing notion that the outmost free surfaces, accompanied by broken translational symmetry and altered atomic configurations, are usually the birthplace for structural transformations. Here, in a layered oxide cathode for Li-ion batteries, we for the first time observe the incipient state of the well documented layered-to-spinel-like structural transformation, which is surprisingly initiated from subsurface layer, rather than the very surface. Coupling atomic level scanning transmission electron microscopy imaging with electron energy loss spectroscopy, we discover that the reconstructed subsurfaces, featuring a mix of discrete patches of layered and spinel-like structures, are associated with selective atomic species partition and consequent nanoscale non-uniform composition gradient distribution at the subsurface. In conclusion, our findings provide fundamental insights on atomic-scale mechanisms of structural transformation in layered cathodes.

25 ENERGY STORAGE↗

NASA NTRS1975

A statistical technique for processing radio interferometer data

The output of a radio interferometer is the Fourier transform of the object under investigation. Due to the limited coverage of the Fourier plane, the reconstruction of the image of the source is blurred by the beam of the synthesized array. A maximum-likelihood processing technique is described which uses the statistical properties of the received noise-like signals. This technique has been used extensively in the processing of large-aperture seismic arrays. This inversion method results in a synthesized beam that is more uniform, has lower sidelobes, and higher resolution than the normal Fourier transform methods. The maximum-likelihood method algorithm was applied successfully to very long baseline and short baseline interferometric data.

Papadopoulos, G. D.↗

DOE OSTI2021

ThermalTracker 3D

ThermalTracker-3D is a stereo-vision solution for evaluating flight tracks of birds and bats around offshore wind turbines. Using a pair of thermal video cameras, the technology remotely senses movement of animals and objects, day and night, near critical assets. It generates motion tracks by collapsing a sequence of video frames from each camera into a single image that contains an entire flight track and then applies stereo-vision processing to transform the flight track into three dimensions. The approach allows tracking in near real time and automatically identifies moving objects based on features from the motion track and object size.

Matzner, Shari↗

DOE OSTI2024

Parallel Runtime Interface for Fortran (PRIF) Specification (Rev. 0.3)

This document specifies an interface to support the parallel features of Fortran, named the Parallel Runtime Interface for Fortran (PRIF). PRIF is a proposed solution in which the runtime library is responsible for coarray allocation, deallocation and accesses, image synchronization, atomic operations, events, and teams. In this interface, the compiler is responsible for transforming the invocation of Fortran-level parallel features into procedure calls to the necessary PRIF procedures. The interface is designed for portability across shared- and distributed-memory machines, different operating systems, and multiple architectures. Implementations of this interface are intended as an augmentation for the compiler's own runtime library. With an implementation-agnostic interface, alternative parallel runtime libraries may be developed that support the same interface. One benefit of this approach is the ability to vary the communication substrate. A central aim of this document is to define a parallel runtime interface in standard Fortran syntax, which enables us to leverage Fortran to succinctly express various properties of the procedure interfaces, including argument attributes.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Parallel Runtime Interface for Fortran (PRIF) Design Document (Rev. 0.2)

This design document proposes an interface to support the parallel features of Fortran, named the Parallel Runtime Interface for Fortran (PRIF). PRIF is a proposed solution in which the runtime library is responsible for coarray allocation, deallocation and accesses, image synchronization, atomic operations, events, and teams. In this interface, the compiler is responsible for transforming the invocation of Fortran-level parallel features into procedure calls to the necessary PRIF procedures. The interface is designed for portability across shared- and distributed-memory machines, different operating systems, and multiple architectures. Implementations of this interface are intended as an augmentation for the compiler's own runtime library. With an implementation-agnostic interface, alternative parallel runtime libraries may be developed that support the same interface. One benefit of this approach is the ability to vary the communication substrate. A central aim of this document is to define a parallel runtime interface in standard Fortran syntax, which enables us to leverage Fortran to succinctly express various properties of the procedure interfaces, including argument attributes.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Parallel Runtime Interface for Fortran (PRIF) Specification (Rev. 0.4)

97 MATHEMATICS AND COMPUTING↗