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Model Inputs, Outputs, and Scripts associated with: “Spatial microbial respiration variations in the hyporheic zones within the Columbia River Basin”

This data package is associated with the publication “Spatial microbial respiration variations in the hyporheic zones within the Columbia River Basin” published in the Journal of Geophysical Research: Biogeosciences (Son et al. 2022) available at doi: 10.1029/2021JG006654. This data package includes the key model inputs/outputs of the river corridor model for the Columbia River Basin (CRB) and the model source codes, which were used in the manuscript. The model is a carbon-nitrogen-coupled river corridor model (RCM), and the model is used to quantify hyporheic zone (HZ) aerobic and anaerobic respiration at the NHDPLUS stream reach scales. The RCM used in this study combines empirical substrate models derived from observations and three microbially driven reactions to compute respiration of the HZ for each National Hydrography Dataset (NHD) reach within the CRB. The reactions in HZs of each NHD reach include anaerobic respiration and two-step anaerobic respiration via denitrification. Our HZ respiration estimates are limited to the lotic (or flowing) stream/river systems, and do not account for the respiration process in water column. Note that the RCM only simulates the HZ’s contribution to the dissolved carbon dioxide (CO2) concentrations in the streams, and the CO2 emissions to the atmosphere are not modelled. The model computes at hourly timesteps because of the fast reaction rates. The key input data of the model are exchange flux, residence time, and stream solute (dissolved organic carbon (DOC), dissolved oxygen (DO), and nitrate concentrations). These inputs are constant over time and represent long-term averaged values.This modeling framework successfully quantified HZ respiration components over multiple scales. It revealed key mechanisms driving the spatial variation of HZ aerobic and anaerobic respiration in reaches with varying hydrologic and substrate conditions. Thus, this modeling study offers a testing hypothesis in different river system (e.g., climate and biomes) for the HZ respiration processes, and can be used as a sampling design tool for large-scale HZ experimental studies.This dataset contains five folders: (1) model_inputs, (2) model_outputs, (3) Rscripts, (4) figures, and (5) model_codes. It also contains a readme, file level metadata (FLMD), and data dictionary (dd). Please see the FLMD for a list of all the files contained in this data package and descriptions for each. The model_inputs folder contains the model inputs used to drive the model simulations. The model_outputs folder contains key model output files from the river corridor model. The Rscripts folder contains the Rscripts for pre- and post- processing model results. The figures folder contains the raw figures associated with the manuscript. The model_codes folder includes key model source codes/input files. All files are .jpg, .jpeg, .out, .e, .od, .dat, .sub, .F90, .0, .R, .sbx, .cpg, .sbn, .shx, .shp, .dbf, .prj, .tfw, .tif, .xml, .pdf, or .csv.

54 ENVIRONMENTAL SCIENCES↗

Assimilation of Multiscale Data into Multifidelity Biogeochemical Models (Final Report)

Quantitative predictions of subsurface processes rely on computational models that capture, with different degrees of fidelity, complex interactions between hydrologic and biogeochemical processes. Molecular- and pore-scale models provide a high-fidelity representation of these processes but are impractical at the field scale. Reduced complexity (e.g., field-scale or data-driven) models sacrifice some degree of fidelity in favor of computational efficiency. Uncertainty and assimilation of data into model predictions, pose a question of model selection: Given a significant difference in computational cost, can a lower-fidelity model be preferable to its higher-fidelity counterpart? Since a predictive model must be computable in reasonable time it has to operate at the field scale, with molecular- and pore-scale data (obtained either from simulations or measurements) determining both the model's structure and parameters. Availability of such multi-resolution data raises a question hitherto undressed in hydrogeology: Can a coarse model dynamically ``learn'' its own structure (e.g., adjust the reaction pathways in its transport module) as more fine-scale data become available during simulations? Our results in multifidelity simulations, data assimilation, and machine learning led us to hypothesize that the answer to these questions is ``yes''. The overarching goal of this project was to confirm this hypothesis by developing scalable, computationally efficient tools for assimilation of data into multiscale models, in which fine-scale data and simulations dynamically inform and autonomously modify coarse-scale models. Our research led to nine manuscripts, three of which have been published and the other six are currently under review.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Space-based Ornithology-Studying Bird Migration and Environmental Change in North America

Natural fluctuations in the availability of critical stopover sites coupled with anthropogenic destruction of wetlands, land-use change, and anticipated losses due to climate change present migratory birds with a formidable challenge. We have developed an individual-based, spatially explicit bird migration model that simulates the migration routes, timing and energy budgets of individual birds under dynamic weather and land surface conditions. Our model incorporates biophysical constraints, individual bird energy status, bird behavior, and flight aerodynamics. We model the speed, direction, and timing of individual birds moving through a user specified Lagrangian grid. The model incorporates environmental properties including wind speed and direction, topography, dynamic hydrologic properties of the landscape, and environmental suitability. The model is driven by important variables estimated from satellite observations of the land surface, by data assimilation products from weather and climate models, and biological field data. We illustrate the use of the model to study the impact of both short- and long-term environmental variatios, e.g. climate, drought, anthropogenic, on migration timing (phenology), spatial pattern, and fitness (survival and reproductive success). We present several theoretical simulations of the spring migration of Pectoral Sandpiper (Calidris melanotos) in North America with emphasis on the Central flyway from the Gulf of Mexico to Alaska.

Smith, James↗

Near-Surface Hydrology and Soil Properties Drive Heterogeneity in Permafrost Distribution, Vegetation Dynamics, and Carbon Cycling in a Sub-Arctic Watershed: Modeling Archive

This Modeling Archive is in support of a NGEE-Arctic publication: Shirley et al. (2022) “Near-Surface Hydrology and Soil Properties Drive Heterogeneity in Permafrost Distribution, Vegetation Dynamics, and Carbon Cycling in a Sub-Arctic Watershed". [DOI].The dataset contains outputs from the global sensitivity analysis (GSA) of the “ecosys” model as reported in Shirley et al. (2022). The study showed that discontinuous permafrost environments are characterized by complex feedback loops and strong spatial heterogeneity which is created by variability in near-surface hydrology and soil properties. Additionally, the study demonstrated that missing representation of sub-grid heterogeneity in terrestrial ecosystem models can lead to biased estimates of the high-latitude carbon budget. Included in this dataset are the factor values for each run in the GSA and the model outputs used in this study. Included are two *.csv data files and one *.pdf.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Historical sensible-heat-flux variations key to predicting future hydrologic sensitivity

Under anthropogenic climate change (CC), the global hydrological cycle intensifies at a rate known as hydrologic sensitivity (HS). Global climate models (GCMs) exhibit substantial uncertainty in HS. Past work suggests that another form of HS, derived from internal climate variability (IV), is useful for constraining this uncertainty. However, these two forms of HS are weakly related. Here we show that decomposing HS under both CC and IV, based on the global energy budget, provides insight into the likely range of future HS. We find that sensible heat exchange between the atmosphere and ocean is not accounted for in the atmospheric energy budget under IV, masking the connection between HS under IV and CC. Removing this term, a closer relationship emerges. We use observations in conjunction with this relationship to suggest an upward shift in the likely range of future HS (66% confidence interval: 2.00–2.36 W m -2 K -1

54 ENVIRONMENTAL SCIENCES↗

Matrix Diffusion Controls Mountain Hillslope Groundwater Ages and Inferred Storage Dynamics

Groundwater age distributions provide fundamental insights on coupled water and biogeochemical processes in mountain watersheds. Field-based studies have found mixtures of young and old-aged groundwater in mountain catchments underlain by bedrock; yet, the processes that dictate these groundwater age distributions are poorly understood. In this work, we use the coupled ParFlow-CLM integrated hydrologic and EcoSLIM particle tracking models to simulate groundwater age distributions on a lower montane hillslope in the East River Watershed, Colorado (USA). We develop a convolution-based approach to propagate fracture-matrix diffusion processes to the EcoSLIM advection-dominated age distributions. We compare observed 3 H and 4 He concentrations from two groundwater wells against model predictions that have varying advective transport times and matrix diffusion magnitudes. Based on a Monte Carlo analysis that considers uncertain matrix and fracture parameters, we find that matrix diffusion is needed to jointly predict 3 H and 4 He observations at both wells. The advection-dominated age distributions lack adequate mixing of young and old-aged water to capture the observed co-occurrence of 3 H and 4 He. The model scenario that best matches the 3 H, 4 He, and water level observations when considering both advective flowpath and matrix diffusion mixing processes has a dynamic bedrock groundwater reservoir that is susceptible to considerable storage losses during low-snow periods. This dynamic groundwater system amplifies the need to assimilate deeper bedrock groundwater into watershed hydro-biogeochemical predictions. This work further highlights the importance of considering matrix diffusion when interpreting environmental tracers in bedrock groundwater systems.

54 ENVIRONMENTAL SCIENCES↗

Decovalex-2019 (Task A Final Report)

The DECOVALEX Project is an on-going international research collaboration, established in 1992, to advance the understanding and modeling of coupled Thermal (T), Hydrological (H), Mechanical (M) and Chemical (C) processes in geological in geological systems. This document is the final report of Task A which was proposed by the DECOVALEX Project and coordinated by the British Geological Survey (BGS), presenting the technical definitions of the problems studied, approaches applied, achievements made and outstanding issues for future research. The purpose of Task A under DECOVALEX-2019 is to better understand the processes governing the advective movement of gas in both low-permeability argillaceous repository host rocks and clay-based engineered barriers. Special attention is given to the mechanisms controlling gas entry, flow and pathway sealing and their impact on the performance of the engineered clay barrier. Previous work suggests gas flow may be accompanied by the creation of dilatant pathways whose properties change temporally and spatially within the medium. Thus, new numerical representations for the quantitative prediction of gas migration fluxes through argillaceous rock formations have been developed. These provide an invaluable tool with which to assess the impact of gas flow on repository layout and therefore design of any future facility. In addition, experience gained through this task is of direct relevance to other clay-based engineering issues where immiscible gas flow is a consideration including shale gas, hydrocarbon migration, carbon capture and storage and landfill design.

58 GEOSCIENCES↗

DECOVALEX-2019 (Task G Final Report)

The DECOVALEX Project is an on-going international research collaboration, established in 1992, to advance the understanding and modeling of coupled Thermal (T), Hydrological (H), Mechanical (M) and Chemical (C) processes in geological in geological systems. This document is the final report of Task G which was proposed by the Swedish Radiation Safety Authority (SSM) and coordinated by geomecon GmbH, presenting the technical definitions of the problems studied, approaches applied, achievements made and outstanding issues for future research. Task G in DECOVALEX-2019 is primarily concerned with the evolution of transmissivity throughout the lifetime of a repository for radioactive waste, and in particular of spent nuclear fuel, in sparsely fractured and competent crystalline rock masses, and the representation of these processes via numerical simulation. The numerical simulations were to be evaluated for their suitability, and to be validated. Over the course of the work presented here, not only were transmissivity changes and the best approaches to simulate those change examined, but also strategies were to be developed on how to monitor transmissivity change. Guidelines on what a control program and a monitoring system for a repository should include and be able to measure, and how this can be done in practice, was a key objective of the research project.

58 GEOSCIENCES↗

DECOVALEX-2019 (Task D: INBEB Final Report)

The DECOVALEX Project is an on-going international research collaboration, established in 1992, to advance the understanding and modeling of coupled Thermal (T), Hydrological (H), Mechanical (M) and Chemical (C) processes in geological in geological systems. This document is the final report of Task D which was proposed by the DECOVALEX Project and coordinated by CIMNE_UPC, presenting the technical definitions of the problems studied, approaches applied, achievements made and outstanding issues for future research. Task D of the DECOVALEX 2019 project is devoted to the study of the hydro-mechanical (HM) and thermo-hydro-mechanical (THM) Interactions in Bentonite Engineered Barriers (INBEB). Special attention is paid to the evolution of barrier heterogeneity under transient conditions. A proper understanding of the processes occurring during the transient period requires the appropriate simulation of the behavior of the engineered barrier by means of coupled numerical analyses. In this context, the main objective of the Task is to assess the capabilities of numerical formulations and codes to simulate and interpret the HM and THM behavior of the bentonite barrier, with a particular focus on the final state reached on saturation.

58 GEOSCIENCES↗

Environmental application of remote sensing methods to coastal zone land use and marine resource management. Appendix F: User's guide for advection, convection prototype

A user's manual is provided for the environmental computer model proposed for the Richmond-Cape Henry Environmental Laboratory (RICHEL) application project for coastal zone land use investigations and marine resources management. The model was developed around the hydrologic cycle and includes two data bases consisting of climate and land use variables. The main program is described, along with control parameters to be set and pertinent subroutines.

Source record↗

A GCM simulation study of the influence of Saharan evapotranspiration and surface-albedo anomalies on July circulation and rainfall

The influence of surface albedo and evapotranspiration anomalies that could result from the hypothetical semiarid vegetation over North Africa on its July circulation and rainfall is examined using the Goddard Laboratory for Atmospheres GCM. It is shown that increased soil moisture and its dependent evapotranspiration produces a cooler and moister PBL over North Africa that is able to support enhanced moist convection and rainfall in Sahel and southern Sahara. It is found that lower surface albedo yields even higher moist static energy in the PBL and enhances the local moist convection and rainfall. Modifying the rain-evaporation parameterization in the model produces changes in the hydrological cycle and rainfall anomalies in distant regions. The effects of different falling rain parameterizations are discussed.

Sud, Y. C.↗

A direct algorithm for convective adjustment of the vertical temperature profile for an arbitrary critical lapse rate

An efficient direct algorithm of convective adjustment for an arbitrary critical value of the vertical temperature lapse rate gamma is proposed. The algorithm provides an exact and unique solution of a standard convective adjustment problem for models with temperature specified either on nonuniformly spaced levels or for layers of different thicknesses in pressure, sigma, or other vertical coordinate related to pressure. The algorithm may be recommended for use either directly in atmospheric models not explicitly including a hydrologic cycle with prescribed gamma, or as a part of more complicated parameterizations of moist convection, where gamma may be calculated depending on relative humidity.

Akmaev, Rashid A.↗

The role of the EOS SAR in Mission to Planet Earth

The Earth Observing System (EOS) synthetic aperture radar (SAR) is a multifrequency, multipolarization radar which will be capable of the global monitoring of key quantitative measurements of geophysical and biophysical parameters. Scheduled to fly on its own dedicated spacecraft, it is one of three platforms that will make up the space-based component to EOS. The role of the SAR in the EOS mission is discussed, wtih emphasis on the geophysical product variables which will be generated with the SAR and used in global hydrologic, biogeochemical and energy cycle models. The latest concepts for processing the data, including calibration and geophysical processing strategies, are presented.

Holt, Benjamin↗

Parameterization of surface heat fluxes above a forest with satellite thermal sensing

The authors discuss the feasibility of determining the surface flux of sensible heat from forests with surface temperatures measured by satellites together with temperature soundings in the unstable atmospheric boundary layer (ABL). The latent heat flux is derived from the sensible heat flux by means of the energy budget. The study makes use of data collected during HAPEX-MOBILHY (Hydrologic Atmospheric Pilot Experiment-Modelization du Bilan Hydrique). The methodology is based on turbulence similarity for the unstable ABL. The surface temperature data were derived from measurements by the advanced very high resolution radiometer (AVHRR) aboard the NOAA-9 satellite; the atmospheric profiles were obtained by radiosondes.

Brutsaert, Wilfried↗

The Multi-Center Airborne Coherent Atmospheric Wind Sensor: Recent Measurements and Future Applications

The coherent Doppler lidar, when operated from an airborne platform, offers a unique measurement capability for study of atmospheric dynamical and physical properties. This is especially true for scientific objectives requiring measurements in optically-clear air, where other remote sensing technologies such as Doppler radar are at a disadvantage in terms of spatial resolution and coverage. Recent experience suggests airborne coherent Doppler lidar can yield unique wind measurements of--and during operation within--extreme weather phenomena. This paper presents the first airborne coherent Doppler lidar measurements of hurricane wind fields. The lidar atmospheric remote sensing groups of National Aeronautics and Space Administration (NASA) Marshall Space Flight Center, National Oceanic and Atmospheric Administration (NOAA) Environmental Technology Laboratory, and Jet Propulsion Laboratory jointly developed an airborne lidar system, the Multi-center Airborne Coherent Atmospheric Wind Sensor (MACAWS). The centerpiece of MACAWS is the lidar transmitter from the highly successful NOAA Windvan. Other field-tested lidar components have also been used, when feasible, to reduce costs and development time. The methodology for remotely sensing atmospheric wind fields with scanning coherent Doppler lidar was demonstrated in 1981; enhancements were made and the system was reflown in 1984. MACAWS has potentially greater scientific utility, compared to the original airborne scanning lidar system, owing to a factor of approx. 60 greater energy-per-pulse from the NOAA transmitter. MACAWS development was completed and the system was first flown in 1995. Following enhancements to improve performance, the system was re-flown in 1996 and 1998. The scientific motivation for MACAWS is three-fold: obtain fundamental measurements of subgrid scale (i.e., approx. 2-200 km) processes and features which may be used to improve parameterizations in hydrological, climate, and general/regional circulation models; obtain similar datasets to improve understanding and predictive capabilities for similarly-scaled processes and features; and simulate and validate the performance of prospective satellite Doppler lidars for global tropospheric wind measurement.

Rothermel, Jeffry↗

SPECIAL SESSION: (H21) on Global Precipitation Mission for Hydrology and Hydrometeorology. Sampling-Error Considerations for GPM-Era Rainfall Products

The proposed Global Precipitation Mission (GPM) builds on the success of the Tropical Rainfall Measuring Mission (TRMM), offering a constellation of microwave-sensor-equipped smaller satellites in addition to a larger, multiply-instrumented "mother" satellite that will include an improved precipitation radar system to which the precipitation estimates of the smaller satellites can be tuned. Coverage by the satellites will be nearly global rather than being confined as TRMM was to lower latitudes. It is hoped that the satellite constellation can provide observations at most places on the earth at least once every three hours, though practical considerations may force some compromises. The GPM system offers the possibility of providing precipitation maps with much better time resolution than the monthly averages around which TRMM was planned, and therefore opens up new possibilities for hydrology and data assimilation into models. In this talk, methods that were developed for estimating sampling error in the rainfall averages that TRMM is providing will be used to estimate sampling error levels for GPM-era configurations. Possible impacts on GPM products of compromises in the sampling frequency will be discussed.

Bell, Thomas L.↗

Determining the Optimum Post Spacing of LIDAR-Derived Elevation Data in Varying Terrain for Flood Hazard Mapping Purposes in North Carolina and Texas

The major flood events in the United States in the past few years have made it apparent that many floodplain maps being used by State governments are outdated and inaccurate. In response, many Stated have begun to update their Federal Emergency Management Agency (FEMA) Digital Flood Insurance Rate Maps. Accurate topographic data is one of the most critical inputs for floodplain analysis and delineation. Light detection and ranging (LIDAR) altimetry is one of the primary remote sensing technologies that can be used to obtain high-resolution and high-accuracy digital elevation data suitable for hydrologic and hydraulic (H&H) modeling, in part because of its ability to "penetrate" various cover types and to record geospatial data from the Earth's surface. However, the posting density or spacing at which LIDAR collects the data will affect the resulting accuracies of the derived bare Earth surface, depending on terrain type and land cover type. For example, flat areas are thought to require higher or denser postings than hilly areas to capture subtle changes in the topography that could have a significant effect on flooding extent. Likewise, if an area has dense understory and overstory, it may be difficult to receive LIDAR returns from the Earth's surface, which would affect the accuracy of that bare Earth surface and thus would affect flood model results. For these reasons, NASA and FEMA have partnered with the State of North Carolina and with the U.S./Mexico Foundation in Texas to assess the effect of LIDAR point density on the characterization of topographic variation and on H&H modeling results for improved floodplain mapping. Research for this project is being conducted in two areas of North Carolina and in the City of Brownsville, Texas, each with a different type of terrain and varying land cover/land use. Because of various project constraints, LIDAR data were acquired once at a high posting density and then decimated to coarser postings or densities. Quality assurance/quality control analyses were performed on each dataset. Cross sections extracted form the high density and then the decimated datasets were individually input into an H&H model to determine the model's sensitivity to topographic variation and the effect of that variation on the resulting water profiles. Additional analysis was performed on the Brownsville, Texas, LIDAR data to determine the percentage of returns that "penetrated" various types of canopy or vegetative cover. It is hoped that the results of these studies will benefit state and local communities as they consider the post spacing at which to acquire LIDAR data (which affects cost) and will benefit FEMA as the Agency assesses the use of different technologies for updating National Flood Insurance Program and related products.

Berglund, Judith↗

Hydrological Variations in Australia Recovered by GRACE High-Resolution Mascons Solutions

Australia represents a challenging region in which to study hydrological variations as recovered by the GRACE (Gravity Recovery And Climate Experiment) mission data. Much of Australia is characterized by relatively small hydrological signals, with large precipitation gradients between the North and the South. These signals are better recovered using innovative GRACE processing techniques such as high-resolution mascon solutions, which may help overcome the deficiencies in the standard GRACE data processing and filtering methods. We will show the power of using regional and global mas con solutions to recover hydrological variations from 2003 to 2011, as well as the oceanic mass variations in the surrounding regions. We will compare the GRACE signals with state of the art hydrology and ocean general circulation models, precipitation, soil moisture and groundwater data sets. We especially emphasize the gravity signatures observed during the decadal drought in the Murray-Darling river basin and the early 2011 floods in North-Western Australia.

Carabajal, Claudia C.↗