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At least 1,009 records · Page 56

Evaluating the potential of disaggregated memory systems for HPC applications

Summary Disaggregated memory is a promising approach that addresses the limitations of traditional memory architectures by enabling memory to be decoupled from compute nodes and shared across a data center. Cloud platforms have deployed such systems to improve overall system memory utilization, but performance can vary across workloads. High‐performance computing (HPC) is crucial in scientific and engineering applications, where HPC machines also face the issue of underutilized memory. As a result, improving system memory utilization while understanding workload performance is essential for HPC operators. Therefore, learning the potential of a disaggregated memory system before deployment is a critical step. This paper proposes a methodology for exploring the design space of a disaggregated memory system. It incorporates key metrics that affect performance on disaggregated memory systems: memory capacity, local and remote memory access ratio, injection bandwidth, and bisection bandwidth, providing an intuitive approach to guide machine configurations based on technology trends and workload characteristics. We apply our methodology to analyze thirteen diverse workloads, including AI training, data analysis, genomics, protein, fusion, atomic nuclei, and traditional HPC bookends. Our methodology demonstrates the ability to comprehend the potential and pitfalls of a disaggregated memory system and provides motivation for machine configurations. Our results show that eleven of our thirteen applications can leverage injection bandwidth disaggregated memory without affecting performance, while one pays a rack bisection bandwidth penalty and two pay the system‐wide bisection bandwidth penalty. In addition, we also show that intra‐rack memory disaggregation would meet the application's memory requirement and provide enough remote memory bandwidth.

Ding, Nan↗

Microwave radiances from horizontally finite precipitating clouds containing ice and liquid hydrometeors

Microwave radiances that would be measured from satellite borne radiometers were computed as a function of rainfall rates from horizontally finite precipitating clouds containing ice and liquid hydrometeors capped by a layer of nonprecipitating ice that covers the remainder of the footprint. Ice at the top of the precipitating clouds depresses the brightness temperatures which depend on rainfall rates because the ice hydrometeor concentrations are assumed to be related to the rainfall rates at the cloud base. It is also found that the brightness temperatures of footprints partially covered by precipitation cells are a nonlinear function of the rainfall rate averaged over the footprint. Thus the average brightness temperatures depend on the peak rainfall rates and the size of the precipitating cloud.

Kummerow, C.↗

The Influence of Sea Ice on Arctic Low Cloud Properties and Radiative Effects

The Arctic is one of the most climatically sensitive regions of the Earth. Climate models robustly project the Arctic to warm 2-3 times faster than the global mean surface temperature, termed polar warming amplification (PWA), but also display the widest range of surface temperature projections in this region. The response of the Arctic to increased CO2 modulates the response in tropical and extra-tropical regions through teleconnections in the atmospheric circulation. An increased frequency of extreme precipitation events in the northern mid-latitudes, for example, has been linked to the change in the background equator-to-pole temperature gradient implied by PWA. Understanding the Arctic climate system is therefore important for predicting global climate change. The ice albedo feedback is the primary mechanism driving PWA, however cloud and dynamical feedbacks significantly contribute. These feedback mechanisms, however, do not operate independently. How do clouds respond to variations in sea ice? This critical question is addressed by combining sea ice, cloud, and radiation observations from satellites, including CERES, CloudSAT, CALIPSO, MODIS, and microwave radiometers, to investigate sea ice-cloud interactions at the interannual timescale in the Arctic. Cloud characteristics are strongly tied to the atmospheric dynamic and thermodynamic state. Therefore, the sensitivity of Arctic cloud characteristics, vertical distribution and optical properties, to sea ice anomalies is computed within atmospheric dynamic and thermodynamic regimes. Results indicate that the cloud response to changes in sea ice concentration differs significantly between atmospheric state regimes. This suggests that (1) the atmospheric dynamic and thermodynamic characteristics and (2) the characteristics of the marginal ice zone are important for determining the seasonal forcing by cloud on sea ice variability.

Taylor, Patrick C.↗

The derivation of cloud parameters from satellite-measured radiances for use in surface radiation calculations

A simple scheme is developed for calculating the cloud amount, optical thickness, and height from satellite-measured radiances and is applied to the International Satellite Cloud Climatology Project B3 radiance data to compute the surface radiative fluxes over the tropical and subtropical western Pacific regions for July 1983, using a radiative transfer model. Results are presented on the sensitivity of surface radiation to the cloud scheme. In addition, the validity of an empirical relationship between the solar fluxes at the surface and at the top of the atmosphere is examined.

Chou, Ming-Dah↗

Constraining the thermally pulsing asymptotic giant branch phase with resolved stellar populations in the Small Magellanic Cloud

The thermally-pulsing asymptotic giant branch (TP-AGB) experienced by low- andintermediate-mass stars is one of the most uncertain phases of stellar evolution and themodels need to be calibrated with the aid of observations. To this purpose, we couplehigh-quality observations of resolved stars in the Small Magellanic Cloud (SMC) withdetailed stellar population synthesis simulations computed with theTRILEGALcode.The strength of our approach relies on the detailed spatially-resolved star formationhistory of the SMC, derived from the deep near-infrared photometry of the VISTAsurvey of the Magellanic Clouds, as well as on the capability to quickly and accuratelyexplore a wide variety of parameters and effects with theCOLIBRIcode for the TP-AGB evolution. Adopting a well-characterized set of observations – star counts andluminosity functions – we set up a calibration cycle along which we iteratively changea few key parameters of the TP-AGB models until we eventually reach a good fit tothe observations. Our work leads to identify two best-fitting models that mainly differin the efficiencies of the third dredge-up and mass loss in TP-AGB stars with initialmasses larger than about 3 M. On the basis of these calibrated models we providea full characterization of the TP-AGB stellar population in the SMC in terms of stel-lar parameters (initial masses, C/O ratios, carbon excess, mass-loss rates). Extensivetables of isochrones including these improved models are publicly available

79 ASTRONOMY AND ASTROPHYSICS↗

The collision of Jupiter and Comet Shoemaker-Levy 9

A simple description of the disruption and deceleration of 100-m- to 5-km-diameter comets striking Jupiter is combined with numerical simulations of the subsequent explosions to predict the fate of Comet Shoemaker-Levy 9. Detailed numerical simulations of the first 3 min of the explosion were performed. Our numerical simulations begin either with hot cylinders with dimensions suggested by the disruption and deceleration model or with an initial wake constructed from a moving line charge. In all cases, extensive plumes of hot gas are expelled from the atmosphere. The models with wakes evolve about twice as fast as the initially confined models. Models of both types generate similar pressure waves into the planet. Temperatures and negative hydrogen ion opacities were computed. For atmospheric entry, light curves were computed. On entry the largest bolides could be very bright, possibly as bright as Jupiter for observers placed to see them, although for kilometer-size impactors the luminosity peak is obscured by clouds. For the fireball, light curves were computed from the numerical simulations. Metals from the vaporized comet provide electrons that dramatically increase the opacity of Jovian air at low temperature. The fireball rises through and above the atmosphere, brightening at first as its surface area increases, but later fading to invisibility as its temperature drops and its opacity plummets.

Zahnle, Kevin↗

Clouds and the Earth's Radiant Energy System (CERES) algorithm theoretical basis document: Determination of surface and atmosphere fluxes and temporally and spatially averaged products (subsystems 5-12) - volume 4

The theoretical bases for the Release 1 algorithms that will be used to process satellite data for investigation of the Clouds and the Earth's Radiant Energy System (CERES) are described. The architecture for software implementation of the methodologies is outlined. Volume 4 details the advanced CERES techniques for computing surface and atmospheric radiative fluxes (using the coincident CERES cloud property and top-of-the-atmosphere (TOA) flux products) and for averaging the cloud properties and TOA, atmospheric, and surface radiative fluxes over various temporal and spatial scales. CERES attempts to match the observed TOA fluxes with radiative transfer calculations that use as input the CERES cloud products and NOAA National Meteorological Center analyses of temperature and humidity. Slight adjustments in the cloud products are made to obtain agreement of the calculated and observed TOA fluxes. The computed products include shortwave and longwave fluxes from the surface to the TOA. The CERES instantaneous products are averaged on a 1.25-deg latitude-longitude grid, then interpolated to produce global, synoptic maps to TOA fluxes and cloud properties by using 3-hourly, normalized radiances from geostationary meteorological satellites. Surface and atmospheric fluxes are computed by using these interpolated quantities. Clear-sky and total fluxes and cloud properties are then averaged over various scales.

Wielicki, Bruce A.↗

Distributed database kriging for adaptive sampling (D²KAS)

We present an adaptive sampling method supplemented by a distributed database and a prediction method for multiscale simulations using the Heterogeneous Multiscale Method. A finite-volume scheme integrates the macro-scale conservation laws for elastodynamics, which are closed by momentum and energy fluxes evaluated at the micro-scale. In the original approach, molecular dynamics (MD) simulations are launched for every macro-scale volume element. Our adaptive sampling scheme replaces a large fraction of costly micro-scale MD simulations with fast table lookup and prediction. The cloud database Redis provides the plain table lookup, and with locality aware hashing we gather input data for our prediction scheme. For the latter we use kriging, which estimates an unknown value and its uncertainty (error) at a specific location in parameter space by using weighted averages of the neighboring points. We find that our adaptive scheme significantly improves simulation performance by a factor of 2.5 to 25, while retaining high accuracy for various choices of the algorithm parameters.

36 MATERIALS SCIENCE↗

Utilization of Streamtubes to Analyze the Physical Interaction of a Dispersed Cloud with the CRM65 Hybrid Midspan Model

Recently there have been numerous efforts to identify the relevant icing physics related to the formation of complex three dimensional features, sometimes referred to as ’scallops’, on swept wings. However, much of the physics is still not well understood. This paper computationally investigates the interaction of the icing cloud with the 65 percent Common Research Model (CRM65). Both the interaction with an uniced model, and the interaction with a representative simulated three dimensional ice accretion are analyzed. Preliminary results suggest that the liquid water content increases near the aerodynamic body. For small droplets on the uniced geometry, the particle velocity vector becomes nearly parallel with the aerodynamic model resulting in a low value of collection efficiency. When a three dimensional feature with a length scale much smaller than the leading edge of the airfoil is introduced into the flow, the impingement of small particles can become significantly more perpendicular to the particle velocity vector in the region of these features. Since the liquid water content near the body has increased due to the interaction with the larger scale features of the aerodynamic model, i.e. the leading edge of the swept wing, extremely high collection efficiency is observed. These results suggest that three dimensional features are likely a significant physical driver that should be modeled in some capacity when simulating the impingement of a cloud on an aerodynamic model.

Icing↗

Utilization of Streamtubes to Analyze the Physical Interaction of a Dispersed Cloud with the CRM65 Hybrid Midspan Model

Recently there have been numerous efforts to identify the relevant icing physics related to the formation of complex three dimensional features, sometimes referred to as ’scallops’, on swept wings. However, much of the physics is still not well understood. This paper computationally investigates the interaction of the icing cloud with the 65 percent Common Research Model (CRM65). Both the interaction with an uniced model, and the interaction with a representative simulated three dimensional ice accretion are analyzed. Preliminary results suggest that the liquid water content increases near the aerodynamic body. For small droplets on the uniced geometry, the particle velocity vector becomes nearly parallel with the aerodynamic model resulting in a low value of collection efficiency. When a three dimensional feature with a length scale much smaller than the leading edge of the airfoil is introduced into the flow, the impingement of small particles can become significantly more perpendicular to the particle velocity vector in the region of these features. Since the liquid water content near the body has increased due to the interaction with the larger scale features of the aerodynamic model, i.e. the leading edge of the swept wing, extremely high collection efficiency is observed. These results suggest that three dimensional features are likely a significant physical driver that should be modeled in some capacity when simulating the impingement of a cloud on an aerodynamic model.

Icing↗

High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation

Computing a Voronoi or Delaunay tessellation from a set of points is a core part of the analysis of many simulated and measured datasets: N-body simulations, molecular dynamics codes, and LIDAR point clouds are just a few examples. Such computational geometry methods are common in data analysis and visualization; but as the scale of simulations and observations surpasses billions of particles, the existing serial and shared-memory algorithms no longer suffice. A distributed-memory scalable parallel algorithm is the only feasible approach. The primary contribution of this paper is a new parallel Delaunay and Voronoi tessellation algorithm that automatically determines which neighbor points need to be exchanged among the subdomains of a spatial decomposition. Other contributions include periodic and wall boundary conditions, comparison of our method using two popular serial libraries, and application to numerous science datasets.

97 MATHEMATICS AND COMPUTING↗

The Future of NASA Earth Science in the Commercial Cloud: Challenges and Opportunities

NASA produces a large volume and variety of data products that are used every day to support research, decision making, and education. The widespread use of NASA’s Earth Science data is enabled by NASA’s Earth Science Data System (ESDS) program, which oversees the archiving and distribution of these data and invests in the development of new data systems and tools. However, NASA’s current approach to Earth Science data distribution — based on distributed institutional archives with individual on-premises high-performance computing capabilities — faces some significant challenges, including massive increases in data volume from upcoming missions, a greater need for transdisciplinary science that synthesizes many different kinds of observations, and a push to make science more open, inclusive, and accessible. To address these challenges, NASA is aggressively migrating its Earth Science data and related tools and services into the commercial cloud. Migration of data into the commercial cloud can significantly improve NASA’s existing data system capabilities by (1) providing more flexible options for storage and compute (including rapid, as-needed access to state-of-the-art capabilities); (2) by centralizing and standardizing data access, which gives all of NASA’s institutional data centers access to all of each other’s datasets; and (3) by facilitating “analysis-in-place”, whereby users can bring their own computational workflows and tools to the data rather than having to maintain their own copies of NASA datasets. However, migration to the commercial cloud also poses some significant challenges, including (1) managing costs under a “pay-as-you-go” model; (2) incompatibility with existing tools and data formats with object-based storage and network access; (3) vendor lock-in; (4) challenges with data access for workflows that mix on-premise and cloud computing; and (5) standardization for highly diverse data as is present in NASA’s data archive. I conclude with two examples of recent NASA activities showcasing capabilities enabled by the commercial cloud: An interactive analysis and development platform for analyzing airborne imaging spectroscopy data, and a new collection of tools and services for data discovery, analysis, publication, and data-driven storytelling (Visualization, Exploration, and Data Analysis, VEDA).

Alexey N Shiklomanov↗

E3SM: Improved Climate Prediction with Exascale Capability

The Energy Exascale Earth System Model (E3SM) project is an ongoing, state-of-the-science earth system modeling, simulation, and prediction effort that optimizes Department of Energy (DOE) computing resources to meet the science needs of the nation and the agency’s mission objectives. Climate simulation has become a proven tool for identifying and quantifying the impacts of climate change, but even greater accuracy is required at all levels to improve forecast precision. Understanding the impact of climate change on global and regional water cycles is one of the highest priorities and most difficult challenges in climate change prediction. As part of a subproject of DOE’s Exascale Computing Project, a multidisciplinary team including geophysical and computational scientists developed a multiscale modeling framework (MMF) to refine cloud representation in E3SM climate simulation on GPU accelerated supercomputers, making higher resolution, more computationally efficient predictions possible.

54 ENVIRONMENTAL SCIENCES↗

Absorption in Extended Inhomogeneous Clouds

The launch of several different sensors, including CloudSat, into the A-train constellation of satellites allows us for the first time to compute absorption that can occur in realistic vertically inhomogeneous clouds including multiple cloud decks. CloudSat data show that these situations are common. Therefore, understanding vertically inhomogeneous clouds is important from both climate and satellite atmospheric composition remote sensing perspectives. Satellite passive sensors that operate from the near IR to the UV often rely on radiative cloud pressures derived from absorption in oxygen bands (A, B, gamma, or O2-O2 bands) or from rotational-Raman scattering in order to retrieve information about atmospheric trace gases. The radiative cloud pressure is distinct from the physical cloud top derived from thermal infrared measurements. Therefore, the combination of information from different passive sensors yields some information about the cloud vertical profile. When either or both the clouds or atmospheric absorbers (trace gases and aerosols) are vertically inhomogeneous, the use of an effective cloud pressure derived from these approaches may lead to errors. Here, we focus on several scenarios (deep convective clouds and distinct two layer clouds) based on realistic cloud optical depth vertical profiles derived from the CloudSatfMODIS combination. We focus on implications for trace-gas column amount retrievals (specifically ozone and NO2) and derived surface UV irradiance from the Ozone Monitoring Instrument (OMI) on the Atrain Aura platform.

Joiner, Joanna↗

A novel approach for introducing cloud spatial structure into cloud radiative transfer parameterizations

Subgrid-scale variability is one of the main reasons why parameterizations are needed in large-scale models. Although some parameterizations started to address the issue of subgrid variability by introducing a subgrid probability distribution function for relevant quantities, the spatial structure has been typically ignored and thus the subgrid-scale interactions cannot be accounted for physically. Here we present a new statistical-physics-like approach whereby the spatial autocorrelation function can be used to physically capture the net effects of subgrid cloud interaction with radiation. The new approach is able to faithfully reproduce the Monte Carlo 3D simulation results with several orders less computational cost, allowing for more realistic representation of cloud radiation interactions in large-scale models.

54 ENVIRONMENTAL SCIENCES↗

Determining microwave brightness temperatures from precipitating horizontally finite and vertically structured clouds

Microwave radiances that may be measured from satellite-borne radiometers operating at 37 GHz have been computed as a function of rainfall rates from horizontally finite precipitating clouds that contain both ice and liquid hydrometeors. It is found that precipitating ice at the top of the cloud depresses brightness temperatures significantly. Detailed comparison between finite clouds and the equivalent sections of plane-parallel clouds are made. Footprint averaged brightness temperatures from finite clouds are found to deviate considerably from the sectioned plane-parallel approximation, especially for large rain rates. Better agreement is achieved if a plane-parallel source function is used in the finite cloud model. The effect of shape and orientation of the precipitating cells with respect to the satellite has also been considered. It is found that the largest errors introduced by plane-parallel theory besides the footprint-filling errors are encountered when precipitating cells have large fractions of their surface below the freezing level or contain large amounts of ice.

Kummerow, C.↗

Transport of ions injected by AMPTE magnetotail releases

The BA and Li ions released in the magnetotail by the AMPTE IRM satellite were not observed in the inner magnetosphere with the AMPTE CCE satellite. In an effort to understand these results, Cladis and Francis (1988) modeled the expansion and ionization of the released atoms and computed several hundred guiding-center trajectories of the ions to sample the motion of each ion cloud. Here, the transport calculations are improved, principally by computing the full gyration motion of the ions in a more realistic model of the geomagnetic tail. The results indicate that the Ba(+) ions were convected inward along a narrow corridor, which was at least 2 earth radii away from the satellite in the case of the first Ba release and at least 3 earth radii away in the case of the second Ba release. Even if the ions had reached the satellite, their energies would have been too low to be detected. The Li(+) ions from both releases drifted inward over broad regions which overlapped the satellite in space and time. However, their fluxes at the satellite were somewhat too low to be detected.

Cladis, J. B.↗

Numerical solution of the radiation transport equation in disk geometry

An efficient numerical method for solving the problem of radiation transport in a dusty medium with two dimensional (2-D) disk geometry is described. It is a generalization of the one-dimensional quasi-diffusion method in which the transport equation is cast in diffusion form and then solved as a boundary value problem. The method should be applicable to a variety of astronomical sources, the dynamics of which are angular-momentum dominated and hence not accurately treated by spherical geometry, e.g., protoplanetary nebulae, circumstellar disks, interstellar molecular clouds, accretion disks, and disk galaxies. The computational procedure and practical considerations for implementing the method are described in detail. To illustrate the effects of 2-D radiation transport, some model results (dust temperature distributions and IR flux spectra) for externally heated, interstellar dust clouds with spherically symmetric and disk geometry are compared.

Spagna, George F., Jr.↗