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At least 1,009 records · Page 56

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Identifying single molecules from fluorescence images obtained by a camera and obtain their location and intensity has many applications. We have developed an efficient mathematical algorithm for this task and translate it into computer software. Our algorithm are fast, stable and accurate comparing other programs to do the similar task. We have used our software in several scientific research areas, such as tracking receptors in live cells, super resolution fluorescence microscopy, and counting mRNA copies in cells.

Hu, Dehong↗

AFUE Analysis Software Tool

The Annual Fuel Utilization Efficiency (AFUE) analysis of residential and light commercial furnaces follows ANSI/ASHRAE Standard 103-2017 (i.e., Method of Testing for Annual Fuel Utilization Efficiency of Residential Central Furnaces and Boilers) . The analysis is a complex, comprehensive method based on furnace configuration and specific components equipped, requiring detailed furnace testing and measurement data. For this reason, an AFUE Analysis Tool using Microsoft Excel enabled with Visual Basic for Applications (VBA) was developed with a user-friendly interface and comprehensive coverage. The tool consists of three worksheets: unit and configuration selection, geometry and measurement data input, and AFUE plus key results. This tool can be used to estimate the AFUE of both condensing and noncondensing furnaces with single-stage, two-stage, and step-modulating functions. The tool was validated with experimental data from Oak Ridge National Laboratory’s natural gas furnace projects that are commercially available. The results indicate the tool is reasonably accurate in the evaluation of a new R&D modified furnace unit.

Gao, Zhiming [Oak Ridge National Laboratory (ORNL)↗

ARCS: Agentic Retrieval-Augmented Code Synthesis with Iterative Refinement

Agentic Retrieval-Augmented Code Synthesis with Iterative RefinementIn supercomputing, efficient and optimized code generation is essential to leverage high-performance systems effectively. We have developed Agentic Retrieval-Augmented Code Synthesis (ARCS), an advanced framework for accurate, robust, and efficient code generation, completion, and translation. ARCS integrates Retrieval-Augmented Generation (RAG) with Chain-of-Thought (CoT) reasoning to systematically break down and iteratively refine complex programming tasks. An agent-based RAG mechanism retrieves relevant code snippets, while real-time execution feedback drives the synthesis of candidate solutions. This process is formalized as a state-action search tree optimization, balancing code correctness with editing efficiency. Evaluations on the Geeks4Geeks and HumanEval benchmarks demonstrate that ARCS significantly outperforms traditional prompting methods in translation and generation quality. By enabling scalable and precise code synthesis, ARCS offers transformative potential for automating and optimizing code development in supercomputing applications, enhancing computational resource utilization

Bhattarai, Manish [Los Alamos National Labs]↗

Design of a Molten Salt Flow Cell for Combined Absorbance and Laser-Induced Breakdown Spectroscopy for Online Measurements

A novel flow cell allowing for multiple optical spectroscopy measurements on flowing molten salts was designed, and demonstrative calibrations of impurities in aqueous samples were performed. Online compositional measurements of molten salts are of high interest to monitor the state of relevant solar and nuclear systems. Here, the Spectroscopic Configuration for Optical Real-Time Characterization of High-Temperature (SCORCH) fluids cell was designed to meet this need by providing optical access to a high-temperature molten salt sample stream without physical contact between the sample and window materials. Laser-induced breakdown spectroscopy (LIBS) was utilized to quantify Li, Cr, Fe, Ni, Sr, and Pr at concentrations ranging nominally from 0 to 315 mmol L −1 . Laser power, frequency, and plasma position were optimized to mitigate challenges associated with sample splashing. Univariate calibration models were built with R 2 > 0.98, percent root mean square error of cross-validation (%RMSECV) as low as 2.7%, and limits of quantification (LOQs) down to 4.1 mmol L −1 . Simultaneously, absorbance calibrations were developed for the applicable analytes (Cr, Ni, and Pr) using Beer’s law with a pathlength of 4.41 ± 0.10 mm. These models provide excellent quantification performance with R 2 > 0.999, %RMSECV as low as 0.6%, and LODs down to 0.08 mmol L −1 . Although these calibrations were performed for each spectroscopic technique separately, the two methods may be combined in the future through multivariate modeling and sensor fusion to provide more robust models with the benefits of both techniques (e.g., absorbance: oxidation state concentrations, LIBS: elemental concentration). Additionally, optimized spectrometers may be deployed to enhance sensitivity.

absorbance spectroscopy↗

Data for Increased bundle sheath leakiness of CO2 during photosynthetic induction shows a lack of coordination between the C4 and C3 cycles

We developed a new application of isotopic gas exchange which couples a tunable diode laser absorption spectroscope (TDL) with a leaf gas exchange system, analyzing leakiness through induction of C4 photosynthesis on dark to high-light transitions. The youngest fully expanded leaf was measured on 40-45 day-old maize(B73) and sorghum (Tx430). Detail definition of each variable in raw Li-6400XT and Li-6800 (in "Original_data_AND_Data_processing_code.zip") is summarized in: https://www.licor.com/env/support/LI-6800/topics/symbols.html#const

bundle sheath leakage↗

Sockeye Validation Support Using the SPHERE Facility

The engineering-scale heat pipe application Sockeye, being developed through the Nuclear En- ergy Advanced Modeling and Simulation program is concurrently undergoing code development and verification and validation activities. The Single Primary Heat Extraction and Removal Emu- lator (SPHERE) facility at Idaho National Laboratory has performed numerous sodium heat pipe experiments, one of which is modeled in this work to support Sockeye validation. Heat pipe data produced by the SPHERE facility was found to be very useful not only for Sockeye validation but also as a useful resource for model development. A Sockeye simulation performed using Sockeye’s conduction model modeled an experimental run at SPHERE and was found to be able to accurately reproduce the steady temperature distribution but revealed discrepancies in transient behavior after shutoff of the power. This effort also revealed a number of challenges of modeling an experimental setup such as SPHERE, for example, the importance of details in the setup such as possible gaps in insulation. Also, continuous collaboration between Sockeye developers and SPHERE experimentalists has been established, which allows future experiments to be refined in response to questions and challenges found by simulating earlier experiments.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

VERA BWR progression problems

During the first phase of the Consortium for Advanced Simulation of Light Water Reactors (CASL) program, the Virtual Environment for Reactor Applications (VERA) was developed with a focus on capabilities for high-fidelity, multiphysics simulation of pressurized water reactors (PWRs). During this development effort, a set of progression problems was created ranging from smaller pin cell calculations to larger 3D full-core calculations. These progression problems helped to guide the development of the software and served as benchmarks against which to test VERA. Since 2019, efforts have been made to extend the capabilities of VERA to model boiling water reactors (BWRs). Because BWR simulations come with many unique challenges, a set of BWR progression problems was developed to aid in this new effort. The BWR progression problems range from 2D lattice calculations to 3D mini-core problems, and reference neutronic solutions were computed using continuous-energy Monte Carlo codes. MPACT, one of the neutronics code in VERA, was benchmarked using the BWR progression problems. The code is capable of computing solutions to all problems. The eigenvalues computed by MPACT agree well with the Monte Carlo reference solutions. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids

The wild, cold-adapted parent of hybrid lager-brewing yeasts, Saccharomyces eubayanus, has a complex and understudied natural history. The exploration of this diversity can be used both to develop new brewing applications and to enlighten our understanding of the dynamics of yeast evolution in the wild. Here, we integrate whole genome sequence and phenotypic data of 200 S. eubayanus strains, the largest collection known to date. S. eubayanus has a multilayered population structure, consisting of two major populations that are further structured into six subpopulations. Four of these subpopulations are found exclusively in the Patagonian region of South America; one is found predominantly in Patagonia and sparsely in Oceania and North America; and one is specific to the Holarctic ecozone. Plant host associations differed between subpopulations and between S. eubayanus and its sister species, Saccharomyces uvarum. S. eubayanus is most abundant and genetically diverse in northern Patagonia, where some locations harbor more genetic diversity than is found outside of South America, suggesting that northern Patagonia east of the Andes was a glacial refugium for this species. All but one subpopulation shows isolation-by-distance, and gene flow between subpopulations is low. However, there are strong signals of ancient and recent outcrossing, including two admixed lineages, one that is sympatric with and one that is mostly isolated from its parental populations. Using our extensive biogeographical data, we build a robust model that predicts all known and a handful of additional regions of the globe that are climatically suitable for S. eubayanus, including Europe where host accessibility and competitive exclusion by other Saccharomyces species may explain its continued elusiveness. We conclude that this industrially relevant species has rich natural diversity with many factors contributing to its complex distribution and natural history.

59 BASIC BIOLOGICAL SCIENCES↗

In-situ polymerized and crosslinked electrolytes with interchangeable Li/Na transport for battery applications

The next generation of batteries requires electrolytes with high conductivity, mechanical stability, good adhesion with electrodes, wide electrochemical windows, and scalability. The present study introduces a concept of doped quasi single-ion conducting copolymers based on methacrylate-(trifluoromethanesulfonyl)imide (TFSI) and vinyl ethylene carbonate which at room temperature are mechanically robust and display ionic conductivities of ~0.1 mS/cm. These electrolytes can be polymerized/crosslinked in-situ, making them easily implementable in current battery manufacturing technologies. They also allow for switching between Li + and Na + transport using simple chemistry procedures. To demonstrate their potential for battery applications, the newly developed Li conductors have been tested in symmetric cells, exhibiting overall impedance below 350 Ohm and plating/stripping stability up to 1 mA/cm 2 . Moreover, lithium metal batteries incorporating this electrolyte and high-voltage Lithium Nickel Manganese Cobalt Oxide (NMC) cathodes show good capacity retention (~79%) during charging and discharging for 80 cycles at C/10 rate and a Coulombic efficiency close to 100% in the entire measurement range. The compositional, mechanical and electrochemical versatility of these electrolytes opens new venues for the design of polymer-based batteries capable of fast charging and extended cycle life, aligning with the current global green energy storage strategies.

Polymer electrolytes↗

Radar Derived Rainfall and Rain Gauge Measurements at SRS

Over the years rainfall data for the Savannah River Site has been obtained from ground level measurements made by rain gauges. These instruments have inherent errors or biases that can impact the measured rainfall totals but are assumed as ground truth for most climatological and weather applications. With the development of weather radar technologies, various methods to derive rainfall totals from radar reflectivity values have been developed and have continued to improve. The Z-R relationship, which uses an exponential relationship to estimate rainfall rate based on radar reflectivity values, provides estimates of rainfall amounts (Z-R Level III) for locations within the radar’s detection range. The recently developed Multi-Radar Multi-Sensor (MRMS) dataset combines reflectivity-based estimates using the Z-R relationship with a network of gauges and other rainfall estimates to produce a refined set of precipitation estimates for each grid point within its domain. Comparisons were done between gauge observations and radar estimates for various SRS locations to assess whether radar derived estimates are representative of rainfall measurements at the site. Results obtained show good agreement between radar derived amounts and ground measurements, with MRMS showing stronger correlations and lower spread than Z-R Level III estimates. Outliers and errors observed appear to be related to hydrometeor classification schemes. In general, MRMS proved to provide sufficiently representative estimates of daily rainfall amounts to replace existing SRS rain gauge measurements.

54 ENVIRONMENTAL SCIENCES↗

National-Tribal Critical Infrastructure Protection: Collaboration for Extraordinary National Security Benefit

This paper examines national and tribal collaborative opportunities to get ahead of the critical infrastructure insecurity problem. Recommendations are viewed through the lens of the Sandia Labs Tribal Cyber-Energy initiative and national security projects. Recommendations include 1) Collaboratively address national priority and shared challenges to gain faster and better solutions to national priority problems on a smaller yet comprehensive American Indian and Alaskan Native sovereign single-point of authority scale 2) Utilize newer standards-based technologies to provide scalable, capable, and manageable solutions for greatly expanded and connected national critical infrastructures 3) Employ Cyber-Physical-Resilient design preliminary analysis to define concept- to-disposition design requirements for preemptive critical infrastructure risk mitigation and baked-in security; 4) Develop data-centric protection to provide increased information asset protection as data shifts from data-owner operated on-premises infrastructure to virtual service provider data-steward owned and operated off-premises infrastructure; and 5) Balance shared solutions with the National Institute of Science and Technology (NIST) Cybersecurity and Risk Management frameworks, and the System Security Engineering Guidelines. As yet unallocated federal funding would support research, development, the timely application of National-Tribal critical infrastructure protection, and critical infrastructure Cyber disruption response and recovery with extraordinary mutual benefits for the foreseeable future. The Critical Infrastructure Insecurity Problem: Rapid modernization and expansive connectivity are due to advances in Information and Communications Technologies that have sweeping cyber impact across all critical infrastructure sectors. Supervisory Control and Data Acquisition and Industrial Control Systems are particularly impacted as systems long separated from the Internet are now being connected and computerized. Virtualization and mobility create a Data Everywhere-User Anywhere paradigm that has evaporated the enterprise network perimeter. There are multi-front technological challenges at play, where long depended on technologies simply don't scale to current needs resulting in a digital dichotomy of competing old and new standards. New standards-based technologies scale but are not as well-known or as widely deployed, which leaves decision makers, stakeholders, and the workforce in a quandary, caught mid-stream between the technological past and the virtual future. Rapid and expansive cyber threat accompanies disruptive change in connectivity and computational dependencies. A lack of action will exacerbate the problem if new technologies roll out without baked-in security design. The Risk: If National-Tribal CIP collaboration to design in security is not done, then an ongoing state of insufficient bolt-on security and elevated threat exposure will remain for years to come.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

FIU Project1: Chemical Process Alternatives for Radioactive Waste [Slides]

"The U.S. DOE Hanford Site has the largest number of high-level waste (HLW) storage tanks and the largest volume of HLW in the United States. The safe storage, retrieval, treatment, and disposal of approximately 53 million gallons of highly toxic, high-level radioactive waste stored in Hanford’s 177 underground tanks are a national priority. Retrieval and treatment of waste from these tanks pose a considerable challenge. Florida International University has been conducting research on several promising alternative processes and technologies that can be applied to address several technology gaps in the current waste retrieval and conditioning plans. Specifically, FIU has been involved in: the evaluation of non-metallic materials in the waste transfer system, evaluation of alternative HLW instrumentation for in-tank applications and the development of technologies to assist in the inspection of tank bottoms at Hanford."

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE Express Quantum Computing Application Teams (QCAT FY20 Report)

The QCOR project consists of 4 main research tasks: 1) scientific applications and algorithm development for machine learning (ML) and quantum theories of condensed matter systems and lattice gauge theories; 2) high-level quantum-classical (HLQC) language and domain specific language (DSL) development; 3) compiler and interfaces development for the HLQC language; and 4) hardware-level control, optimization, and algorithms libraries. In the succeeding sections we report on progress towards our research tasks during the 2020 calendar year.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Solar Field Layout and Aimpoint Strategy Optimization

The existing methods that determine heliostat aiming strategies for concentrating solar power (CSP) central receiver plants typically use heuristics and/or are computationally expensive, and they lack flexibility for different desired flux profiles and receiver geometries. Because of the interaction between layout and aimpoint strategy, considering the former without accounting for the latter may yield solutions with superfluous heliostats that cannot be used efficiently without compromising receiver flux constraints. To that end, we develop a software decision tool that uses innovative optimization methods to both optimize aimpoint strategies and improve candidate layouts for the solar collection field of a CSP central receiver plant. A CSP plant’s effectiveness relies on the optical efficiency of the solar field, which may be limited by losses due to (i) the cosine effect, (ii) atmospheric attenuation, (iii) interference (i.e., shading and blocking) between heliostats, (iv) spillage as a result of heliostat positioning and geometry, and (iv) some heliostats’ inability to direct irradiance to the receiver without damage due to excessive thermal flux. The goal of this work is to obtain optimized aiming strategies and improved solar field layouts that reduce capital cost and increase field optical efficiency and utilization, while meeting the power requirements of a given CSP receiver design. We formulate the aimpoint optimization problem as a mixed-integer linear programming model, which we then decompose into submodels that we solve in parallel. The decomposition subdivides the solar field into sections, and aimpoint strategies for each section are obtained independently of the others. To improve existing layouts, we develop a utilization-weighted efficiency metric that we use to relocate heliostats to sections of the solar field with similar efficiency and higher utilization. Finally, to connect our software to high-fidelity flux models, we develop a Python application programming interface for SolarPILOT, a mature software package that characterizes solar field performance and generates the heliostat layouts and flux maps that serve as input to our models.

14 SOLAR ENERGY↗

Summer 2021 Internship Report

During this internship program, I was assigned with developing a Web application to robustify web resources referenced by links (URI-Rs) in PDFs. It was intended for use in LANL Research 2 Library systems such as RASSTI (Review and Approval System for Scientific and Technical Information), where users submit scholarly PDFs that may contain URI-Rs. For such PDFs, the application should, using Web Archives, create robust snapshots (i.e., Mementos) of the web resources referenced by URI-Rs, and notify this robustification to LANL Research Library systems. The Mementos were to be created using the Robust Links Service, and the notifications were to be sent using the Linked Data Notifications (LDN) Protocol.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Digital Infrastructure Migration Framework Report

This document presents a full-scope Digital Infrastructure implementation and associated lifecycle support recommendations that enable a plant life of 80+ years. Specific technologies and software applications are researched, developed, selected, implemented, and then integrated by utilities to enhance safety, reliability, and economic performance such that the result provides much more than the sum of its parts. Specific selection of these technologies is driven by business case analyses which are utility, station, and unit specific.

42 ENGINEERING↗

VERA Transient Capability to Support ATF/High Burnup Fuel/HALEU Conversion

The Virtual Environment for Reactor Applications (VERA) was developed under the Consortium for Advanced Simulation of Light Water Reactors (CASL). The goal of this new code suite was to provide high-fidelity, whole-core simulation using pin-resolved physics. Extensive steady-state validation of VERA has been performed for reactor cycle depletion simulations and other related simulations. Transient simulations were not a major component of the CASL work; reactivity insertion accidents (RIAs) received most of the focus. However, there are other design basis accidents (DBA) which are of great importance for reactor design and licensing.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

BWR Progression Problems

Under the Consortium for the Advanced Simulation of Light Water Reactors (CASL) Program, the Virtual Environment for Reactor Applications (VERA) was developed with the primary focus to model pressurized water reactors (PWRs). Recently, a new project was started to extend the modeling capability in VERA to model boiling water reactors (BWRs). The new project is called “Modeling and Analysis of Exelon BWRs for Eigenvalue and Thermal Limits Predictability,” and it is led by Oak Ridge National Laboratory (ORNL) and Exelon with participation from Global Nuclear Fuel and three universities: North Carolina State University (NCSU), the University of Michigan, and the University of Illinois.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗