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At least 1,009 records · Page 56

Application of meta-transcriptomics and -proteomics to analysis of in situ physiological state

Analysis of the growth-limiting factor or environmental stressors affecting microbes in situ is of fundamental importance but analytically difficult. Microbes can reduce in situ limiting nutrient concentrations to sub-micromolar levels, and contaminated ecosystems may contain multiple stressors. The patterns of gene or protein expression by microbes in nature can be used to infer growth limitations, because they are regulated in response to environmental conditions. Experimental studies under controlled conditions in the laboratory provide the physiological underpinnings for developing these physiological indicators. Although regulatory networks may differ among specific microbes, there are some broad principles that can be applied, related to limiting nutrient acquisition, resource allocation, and stress responses. As technologies for transcriptomics and proteomics mature, the capacity to apply these approaches to complex microbial communities will accelerate. Global proteomics has the particular advantage that it reflects expressed catalytic activities. Furthermore, the high mass accuracy of some proteomic approaches allows mapping back to specific microbial strains. For example, at the Rifle IFRC field site in Western Colorado, the physiological status of Fe(III)-reducing populations has been tracked over time. Members of a 'subsurface clade' within the Geobacter predominated during carbon amendment to the subsurface environment. At the functional level, proteomic identifications produced inferences regarding (i) temporal changes in anabolism and catabolism of acetate, (ii) the onset of N2 fixation when N became limiting, and (iii) expression of phosphate transporters during periods of intense growth. The application of these approaches in situ can lead to discovery of novel physiological adaptations.

59 BASIC BIOLOGICAL SCIENCES↗

Nonlinear viscoelastic characterization of polycarbonate

Uniaxial tensile creep and recovery data from polycarbonate at six temperatures and six stress levels are analyzed for nonlinear viscoelastic constitutive modeling. A theory to account for combined effects of two or more accelerating factors is presented.

Caplan, E. S.↗

Nonlinear transient responses of initially stressed composite plates

The nonlinear transient response of initially stressed composite plates is investigated using the finite element method. A nine-node isoparametric quadrilateral element is developed to model laminated plates under initial deformation and initial stress according to the Mindlin plate theory and von Karman large deflection assumptions. In the time integration, the Newmark constant acceleration method in conjunction with an efficient and accurate iteration scheme is used. Numerical results for deflections and bending moments for isotropic and laminated plates are obtained.

Chen, J. K.↗

Wall shear stress measurements using a new transducer

A new instrument has been developed for direct measurement of wall shear stress. This instrument is simple and symmetric in design with small moving mass and no internal friction. Features employed in the design of this instrument eliminate most of the difficulties associated with the traditional floating element balances. Vibration problems associated with the floating element skin friction balances have been found to be minimized by the design features and optional damping provided. The unique design of this instrument eliminates or reduces the errors associated with conventional floating-element devices: such as errors due to gaps, pressure gradient, acceleration, heat transfer and temperature change. The instrument is equipped with various sensing systems and the output signal is a linear function of the wall shear stress. Measurement made in three different tunnels show good agreement with theory and data obtained by the floating element devices.

Vakili, A. D.↗

Interpreting anomalies observed in oxide semiconductor TFTs under negative and positive bias stress

Oxide semiconductor thin-film transistors can show anomalous behavior under bias stress. Two types of anomalies are discussed in this paper. The first is the shift in threshold voltage (V{sub TH}) in a direction opposite to the applied bias stress, and highly dependent on gate dielectric material. We attribute this to charge trapping/detrapping and charge migration within the gate dielectric. We emphasize the fundamental difference between trapping/detrapping events occurring at the semiconductor/dielectric interface and those occurring at gate/dielectric interface, and show that charge migration is essential to explain the first anomaly. We model charge migration in terms of the non-instantaneous polarization density. The second type of anomaly is negative V{sub TH} shift under high positive bias stress, with logarithmic evolution in time. This can be argued as electron-donating reactions involving H{sub 2}O molecules or derived species, with a reaction rate exponentially accelerated by positive gate bias and exponentially decreased by the number of reactions already occurred.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Propagation Characteristics of Two Coronal Mass Ejections from the Sun Far into Interplanetary Space

Propagation of coronal mass ejections (CMEs) from the Sun far into interplanetary space is not well understood, due to limited observations. In this study we examine the propagation characteristics of two geo-effective CMEs, which occurred on 2005 May 6 and 13, respectively. Significant heliospheric consequences associated with the two CMEs are observed, including interplanetary CMEs (ICMEs) at the Earth and Ulysses , interplanetary shocks, a long-duration type II radio burst, and intense geomagnetic storms. We use coronagraph observations from SOHO /LASCO, frequency drift of the long-duration type II burst, in situ measurements at the Earth and Ulysses , and magnetohydrodynamic propagation of the observed solar wind disturbances at 1 au to track the CMEs from the Sun far into interplanetary space. We find that both of the CMEs underwent a major deceleration within 1 au and thereafter a gradual deceleration when they propagated from the Earth to deep interplanetary space, due to interactions with the ambient solar wind. The results also reveal that the two CMEs interacted with each other in the distant interplanetary space even though their launch times on the Sun were well separated. The intense geomagnetic storm for each case was caused by the southward magnetic fields ahead of the CME, stressing the critical role of the sheath region in geomagnetic storm generation, although for the first case there is a corotating interaction region involved.

79 ASTRONOMY AND ASTROPHYSICS↗

Development of a new instrument for direct skin friction measurements

A device developed for the direct measurement of wall shear stress generated by flows is described. Simple and symmetric in design with optional small moving mass and no internal friction, the features employed in the design eliminate most of the difficulties associated with the traditional floating element balances. The device is basically small and can be made in various sizes. Vibration problems associated with the floating element skin friction balances were found to be minimized due to the design symmetry and optional damping provided. The design eliminates or reduces the errors associated with conventional floating element devices: such as errors due to gaps, pressure gradient, acceleration, heat transfer, and temperature change. The instrument is equipped with various sensing systems and the output signal is a linear function of the wall shear stress. Dynamic measurements could be made in a limited range and measurements in liquids could be performed readily. Measurement made in the three different tunnels show excellent agreement with data obtained by the floating element devices and other techniques.

Vakili, A. D.↗

Characterization of Shocked Beryllium

Beryllium metal has many excellent structural properties in addition to its unique radiation characteristics, including: high elastic modulus, low Poisson's ratio, low density, and high melting point. However, it suffers from several major mechanical drawbacks: 1) high anisotropy - due to its hexagonal lattice structure and its susceptibility to crystallographic texturing; 2) susceptibility to impurity-induced fracture - due to grain boundary segregation; and 3) low intrinsic ductility at ambient temperatures thereby limiting fabricability. While large ductility results from deformation under the conditions of compression, the material can exhibit a brittle behavior under tension. Furthermore, there is a brittle to ductile transition at approximately 200 C under tensile conditions. While numerous studies have investigated the low-strain-rate constitutive response of beryllium, the combined influence of high strain rate and temperature on the mechanical behavior and microstructure of beryllium has received limited attention over the last 40 years. Prior studies have focused on tensile loading behavior, or limited conditions of dynamic strain rate and/or temperature. The beryllium used in this study was Grade S200-F (Brush Wellman, Inc., Elmore, OH) material. The work focused on high strain rate deformation and examine the validity of constitutive models in deformation rate regimes, including shock, the experiments were modeled using a Lagrangian hydrocode. Two constitutive strength (plasticity) models, the Preston-Tonks-Wallace (PTW) and Mechanical Threshold Stress (MTS) models, were calibrated using the same set of quasi-static and Hopkinson bar data taken at temperatures from 77K to 873K and strain rates from 0.001/sec to 4300/sec. In spite of being calibrated on the same data, the two models give noticeably different results when compared with the measured wave profiles. These high strain rate tests were conducted using both explosive drive and a gas gun to accelerate the material. Preliminary analysis of the results appears to indicate that, if fractured by the initial shock loading, the S200F Be remains sufficiently intact to support a shear stress following partial release and subsequent shock re-loading of the material. Additional 'arrested' drive shots were designed and tested to minimize the reflected tensile pulse in the sample. These tests were done to both validate the model and to put large shock induced compressive loads into the beryllium sample.

36 MATERIALS SCIENCE↗

Chloride-Induced Stress Corrosion Cracking Characteristics of the Used Nuclear Fuel Canister Material

The used nuclear fuel (UNF) dry storage systems are located in the coastal and lake/river-side regions, the service time of which is 60 years and more. One type of dry storage systems is composite of a thin-walled austenitic stainless steel (SS) welded canister and a concrete overpack. The air flows through the canister surface and brings away the decay heat. Meanwhile, the air brings the salt species into the canister and make them deposit on the surface. The salt deposit will be deliquescent when absorbing the moisture air, being corrosive to the surface. NRC and other programs claimed that chloride induced stress corrosion cracking (CISCC) would lead to the canister failure, being one of the major technical gaps for extended dry storage systems. CISCC is induced by the combined influence of the aggressive environment (chloride ions in our case) and tensile stresses (residual stresses in our case) on the susceptible materials (the austenitic SS in our case). Chrome (Cr), as one of the chemical compositions of SSs, plays an important role in the corrosion resistance. It can form a chrome-rich inner barrier oxide layer to prevent the SS from corrosion. However, chloride ions can easily break down the barrier and accelerate dissolution of the underlying metal, the phenomena of which is pitting corrosion. Pitting is the precursor to CISCC as which provides the combination of a local aggressive solution chemistry and a stress concentrating feature. Accordingly, CISCC invariably originates from the pits, and cracks that have nucleated on pit walls can grow around the pit and coalesce to form a complete through-crack. Significant tensile residual stresses, caused by the welding process, exist throughout the thickness of the canister wall. Enos and Bryan found that large residual stresses were in the full-scale mockup container simulating a canister, which supports the SCC propagation. It is therefore interesting to achieve a good knowledge about the effect of welding on the durability of SSs, especially in the corrosive environment. In order to understand the fundamental of the cracking behaviors, it's vital to elucidate the microstructure and microchemistry of cracking. This study focused on observing the CISCC characteristics of the UNF canister material exposed to the humid environment with salt deposit. Extensive micro-characteristics have been achieved by the techniques include focused ion beam/ scanning electron microscope (FIB/SEM), transmission electron microscopy (TEM), energy dispersive spectroscopy (EDS), and optical profiler. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Multigene engineering in plants: Technologies, applications, and future prospects

The emerging bioeconomy presents a promising solution to both economic and environmental challenges. Within the bioeconomy, plants serve as a renewable, sustainable, and cost-effective source of foods, fuels, chemicals, and materials. However, traditional breeding and single-gene engineering approaches fall short in addressing complex traits (e.g., drought tolerance, disease resistance, yield, nutrient use efficiency) which are controlled by multiple genes. The complexity of plant biology often necessitates the use of multigene engineering (MGE), which involves simultaneous ectopic expression, up/down-regulation, or editing of multiple genes, to enhance plant traits relevant to the bioeconomy. These genes may be associated with distinct traits or function as components of specific metabolic and regulatory pathways. This review summarizes current technologies for MGE within the synthetic biology-driven Design-Build-Test-Learn (DBTL) framework, detailing its four key stages: Design – gene construct development; Build – DNA assembly and plant transformation; Test – the molecular, biochemical, and physiological characterization of engineered plants; and Learn – computational modeling to refine, multiplex and iterate the process. Despite good progress in the applications of MGE in biofortification, metabolic engineering, and stress resilience, challenges remain in construct stability, coordinated gene expression, and regulatory predictability. We identified optimization paths and future directions to accelerate MGE deployment in sustainable agriculture, with possible societal benefits including reduced production costs, increased yield, and improved food and nutritional security.

AI-aided plant engineering↗

Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea (Vigna unguiculata (L.) Walp)

Cowpea (Vigna unguiculata (L.) Walp) is an important legume crop for food security in areas of low-input and smallholder farming throughout Africa and Asia. Genetic improvements are required to increase yield and resilience to biotic and abiotic stress and to enhance cowpea crop performance. An integrated cowpea genomic and gene expression data resource has the potential to greatly accelerate breeding and the delivery of novel genetic traits for cowpea. Extensive genomic resources for cowpea have been absent from the public domain; however, a recent early release reference genome for IT97K-499-35 (Vigna unguiculata v1.0, NSF, UCR, USAID, DOE-JGI, http://phytozome.jgi.doe.gov/) has now been established in a collaboration between the Joint Genome Institute (JGI) and University California (UC) Riverside. Here we release supporting genomic and transcriptomic data for IT97K-499-35 and a second transformable cowpea variety, IT86D-1010. The transcriptome resource includes six tissue-specific datasets for each variety, with particular emphasis on reproductive tissues that extend and support the V. unguiculata v1.0 reference. Annotations have been included in our resource to allow direct mapping to the v1.0 cowpea reference. Access to this resource provided here is supported by raw and assembled data downloads.

Spriggs, Andrew↗

Single Particle Combustion of Pre-Stressed Aluminum

An approach for optimizing fuel particle reactivity involves the metallurgical process of pre-stressing. This study examined the effects of pre-stressing on aluminum (Al) particle ignition delay and burn times upon thermal ignition by laser heating. Pre-stressing was by annealing Al powder at 573 K and quenching ranged from slow (i.e., 200 K/min) identified as pre-stressed (PS) Al to fast (i.e., 900 K/min) identified as super quenched (SQ) Al. Synchrotron X-ray Diffraction (XRD) analysis quantified an order of magnitude which increased dilatational strain that resulted from PS Al and SQ Al compared to untreated (UN) Al powder. The results show PS Al particles exhibit reduced ignition delay times resulting from elevated strain that relaxes upon laser heating. SQ Al particles exhibit faster burn times resulting from delamination at the particle core-shell interface that reduces dilatational strain and promotes accelerated diffusion reactions. These results link the mechanical property of strain to reaction mechanisms associated with shell mechanics that explain ignition and burning behavior, and show pre-stressing has the potential to improve particle reactivity.

Hill, Kevin J. (ORCID:0000000202822345)↗

High stereographic resolution texture and residual stress evaluation using time-of-flight neutron diffraction

Neutron diffraction texture measurements provide bulk averaged textures with excellent grain orientation statistics, even for large-grained materials, owing to the probed volume being of the order of 1 cm 3 . Furthermore, crystallographic parameters and other valuable microstructure information such as phase fraction, coherent crystallite size, root-mean-square microstrain, macroscopic or intergranular strain and stress, etc. can be derived from neutron diffractograms. A procedure for combined high stereographic resolution texture and residual stress evaluation was established on the pulsed-neutron-source-based engineering materials diffractometer TAKUMI at the Materials and Life Science Experimental Facility of the Japan Proton Accelerator Research Center, through division of the neutron detector panel regions. Pole figure evaluation of a limestone standard sample with a well known texture suggested that the precision obtained for texture measurement is comparable to that of the established neutron beamlines utilized for texture measurement, such as the HIPPO diffractometer at the Los Alamos Neutron Science Center (New Mexico, USA) and the D20 angle-dispersive neutron diffractometer at the Institut Laue–Langevin (Grenoble, France). A high-strength martensite–austenite multilayered steel was employed for further verification of the reliability of simultaneous Rietveld analysis of multiphase textures and macro stress tensors. By using a texture-weighted geometric mean micromechanical (BulkPathGEO) model, a macro stress tensor analysis with a plane stress assumption showed a rolling direction–transverse direction (RD–TD) in-plane compressive stress (about –330 MPa) in the martensite layers and an RD–TD in-plane tensile stress (about 320 MPa) in the austenite layers. The phase stress partitioning was ascribed mainly to the additive effect of the volume expansion during martensite transformation and the linear contraction misfit between austenite layers and newly transformed martensite layers during the water quenching process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Impact of specimen preparation method on photovoltaic backsheet degradation during accelerated aging test

In this study, we highlight some important factors in the specimen preparation methods for evaluating photovoltaic backsheet properties after accelerated aging. Two different sequences are considered: Method (I) cut-then-age: cut into 1-cm wide strips and then expose to stress, and Method (II) age-then-cut: expose a larger sheet to stress and then cut into 1-cm widths for mechanical property measurements. We also compare the effect of three cutting methods, (a) tensile specimen punch, (b) paper cutter, and (c) fresh razor blade. Several commercial backsheets were evaluated, with stress exposures including (a) pressure cooker test (PCT), (b) dry ultraviolet (UV) radiation exposure, and (c) UV combined damp heat tests. Fourier transform infrared spectrometer (FTIR) and intrinsic viscosity (IV) were used to analyze the materials on unstressed materials and samples exposed to PCT. The results show that both the cutting method and the time of cutting have an impact on the backsheet mechanical properties. Additionally, under UV exposure, Method II, age-then-cut, generally resulted in a higher average value, with more variation than Method I; however, if the side strips from Method II were excluded, the variation dropped to the same level. This is because the specimens at the sides of the sheet get additional damage from UV light from the exposed sides of the sample. In contrast to UV exposure, PCT specimens prepared by Method II result in lower average values and higher variability. This is attributed to embrittlement through the bulk of the sample where the cutting of embrittled specimens appears to result in more edge defects which can then initiate a break at smaller strains. The data suggest that for UV exposures, the specimens should be cut after aging and the exposed side specimens discarded, and that for PCT exposures, the specimens should be cut before the exposure.

14 SOLAR ENERGY↗

Biological Effects of Particles with Very High Energy Deposition on Mammalian Cells Utilizing the Brookhaven Tandem Van de Graaff Accelerator

High LET radiation from GCR (Galactic Cosmic Rays) consisting mainly of high charge and energy (HZE) nuclei and secondary protons and neutrons, and secondaries from protons in SPE (Solar Particle Event) pose a major health risk to astronauts due to induction of DNA damage and oxidative stress. Experiments with high energy particles mimicking the space environment for estimation of radiation risk are being performed at NASA Space Radiation Laboratory at BNL. Experiments with low energy particles comparing to high energy particles of similar LET are of interest for investigation of the role of track structure on biological effects. For this purpose, we report results utilizing the Tandem Van de Graaff accelerator at BNL. The primary objective of our studies is to elucidate the influence of high vs low energy deposition on track structure, delta ray contribution and resulting biological responses. These low energy ions are of special relevance as these energies may occur following absorption through the spacecraft and shielding materials in human tissues and nuclear fragments produced in tissues by high energy protons and neutrons. This study will help to verify the efficiency of these low energy particles and better understand how various cell types respond to them.

Saha, Janapriya↗

In situ AFM studies on lithium (de)intercalation-induced morphology changes in a LixCoO2 micro-machined thin film electrode

Structural instability due to intercalation-induced stresses in electrode materials is one of the key degradation mechanisms of Li-ion batteries. Fragmentation of material degrades structural integrity and electrical resistance, and also accelerates harmful side reactions. In situ experiments are the appropriate approach to investigate the actual time dependent nature of behavior changes of an electrode material while it is charged and discharged. In the current work, a unique in situ electrochemical atomic force microscopy (ECAFM) measurement is made on samples of cylindrical shape, which are micro-machined by focused ion beam (FIB) microscopy. This pre-defined geometry allows the exclusion of secondary, non-active materials from the electrochemically active material as well as the removal of any vagueness coming from the irregular geometry of particles. Also, the experimental results are used to validate a proposed coupled electrochemical and mechanical model for determination of the stress-strain state of active electrode material during electrochemical cycling. The results produced using the model correlate the experimental data rather well. The combined results reveal the key effects of the geometry, kinetics, and mechanics of electrode materials on the stress-strain state, which is a barometer of structural stability of a material.

Park, Jonghuyn↗

An efficient numerical model for predicting residual stress and strain in parts manufactured by laser powder bed fusion

Abstract Computational modeling of additively manufactured structures plays an increasingly important role in product design and optimization. For laser powder bed fusion processes, the accurate modeling of stress and distortion requires large amount of computational cost due to very localized heat input and evolving complex geometries. The current study takes advantage of a graphics processing unit accelerated explicit finite element analysis code and approximated heat conduction analysis to predict the macroscopic thermo-mechanical behavior in laser selective melting. Adjacent layers and tracks were lumped to reduce the number of time steps and elements in the finite element model. The effects of track and layer grouping on prediction accuracy and solution efficiency are investigated to provide a guidance for a cost-effective simulation. Thin-wall builds from Inconel alloy 625 (IN625) powders were simulated by applying the developed modeling approach to get the detailed residual stress and distortion at a computational speed 50 times higher than conventional approach. Under repeated heating and cooling cycles, a high tensile stress was produced near surfaces of a build due to a larger shrinkage on surface than that in central area. It is also shown that horizontal stresses concentrate near the root and top layers of the IN625 build. The predicted residual elastic strain distribution was validated by the experimental measurement using x-ray synchrotron diffraction.

36 MATERIALS SCIENCE↗

Exploring the impact of hydro-mechanical coupling on compaction localization

In deep subsurface environments, where porous rocks are saturated with fluids, hydromechanical coupling plays a critical role in the formation and propagation of localized deformation zones, such as compaction bands. In this study, we numerically investigate the influence of fluid-rock interactions on the development of compaction localization in fluid-saturated rocks. For this purpose, it uses a numerical framework that adapts the heat equation to model the diffusion of pore pressure caused by deformation. This is achieved with specialized subroutines for material behavior and heat transfer formulated within the ABAQUS platform and by allowing changes in rock permeability during strain localization. The results highlight that hydromechanical coupling significantly alters the compaction behavior compared to dry conditions. Under high confining stress, excess pore pressure inhibits the progression of compaction fronts, while in time-dependent processes like rock creep, pore pressure transients accelerate deformation by creating feedback loops between mechanical forces and fluid flow. These findings underscore the importance of saturation in controlling the dynamics of compaction localization and provide insights into the interplay between pore pressure, deformation, and permeability. The implications of this study extend to applications in geological storage, resource extraction, and subsurface geomechanics, offering a deeper understanding of coupled hydromechanical processes in porous rocks.

58 GEOSCIENCES↗