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At least 991 records · Page 55

Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles

Lava caves, tubes, and fumaroles in Hawai‘i present a range of volcanic, oligotrophic environments from different lava flows and host unexpectedly high levels of bacterial diversity. These features provide an opportunity to study the ecological drivers that structure bacterial community diversity and assemblies in volcanic ecosystems and compare the older, more stable environments of lava tubes, to the more variable and extreme conditions of younger, geothermally active caves and fumaroles. Using 16S rRNA amplicon-based sequencing methods, we investigated the phylogenetic distinctness and diversity and identified microbial interactions and consortia through co-occurrence networks in 70 samples from lava tubes, geothermal lava caves, and fumaroles on the island of Hawai‘i. Our data illustrate that lava caves and geothermal sites harbor unique microbial communities, with very little overlap between caves or sites. We also found that older lava tubes (500–800 yrs old) hosted greater phylogenetic diversity (Faith's PD) than sites that were either geothermally active or younger (<400 yrs old). Geothermally active sites had a greater number of interactions and complexity than lava tubes. Average phylogenetic distinctness, a measure of the phylogenetic relatedness of a community, was higher than would be expected if communities were structured at random. This suggests that bacterial communities of Hawaiian volcanic environments are phylogenetically over-dispersed and that competitive exclusion is the main driver in structuring these communities. This was supported by network analyses that found that taxa (Class level) co-occurred with more distantly related organisms than close relatives, particularly in geothermal sites. Network “hubs” (taxa of potentially higher ecological importance) were not the most abundant taxa in either geothermal sites or lava tubes and were identified as unknown families or genera of the phyla, Chloroflexi and Acidobacteria. These results highlight the need for further study on the ecological role of microbes in caves through targeted culturing methods, metagenomics, and long-read sequence technologies.

59 BASIC BIOLOGICAL SCIENCES↗

The Earth in Living Color - NASA’s Surface Biology and Geology Designated Observable

The Surface Biology and Geology (SBG) Designated Observable will transform our understanding of the global land surface, inland and coastal aquatic ecosystems through visible-to-shortwave infra-red imaging (VSWIR) spectroscopy and thermal infra-red (TIR) imaging. SBG is one of four high-priority observables recommended in the 2017 NASA Earth Science Decadal Survey t o address science questions on vegetation and aquatic ecosystem health, snow-cover dynamics, volcanic activity, and minerology. With a planned launch readiness date of 2028, SBG is currently in Pre-Phase A, with Level 1 requirements being developed for a two-spacecraft architecture, including an additional constellation pathfinder. The recommended architecture emerged from an extensive study (2018-2021) that engaged the research and applications community to consider the science questions and measurement objectives of the Decadal Survey. A Science and Applications Traceability Matrix was used as a basis for scoring candidate architectures, with inputs from four working groups that covered algorithms, applications, calibration and validation, and modeling. Two pathfinder studies, Modeling End-to-End Traceability in support of SBG (MEET-SBG) and Space-based Imaging Spectroscopy and Thermal pathfindER (SISTER) are providing pre-launch modeling tools and data for algorithm development to support science value trades. The architecture consists of one spacecraft hosting a wide-swath VSWIR imaging spectrometer providing 30-m ground-sample distance (GSD), a spectral range of 380-2500 nm (at 10 nm resolution), 16-day revisit with 400 signal-to-noise for VNIR and 250 for SWIR (at 25% reflectance). A separate spacecraft will host a wide swath thermal imager, with five to seven bands placed between 4-12 μm), with 60-m (GSD), 3- day revisit, and 0.2K noise-equivalent differential temperature (NeDT). A VNIR compact camera will be hosted on the TIR spacecraft to enable coincident TIR and VNIR observations. A constellation pathfinder will evaluate options for enabling VSWIR mission continuity using Small Sats or data buys. Partnerships with international space agencies contribute technology as well as improvements to temporal revisit. SBG, when launched, will be the first dedicated mission collecting the full spectra of the Earth’s ‘living color’ and will play a critical role in NASA’s Earth System Observatory.

David S Schimel↗

MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations

We provide a global, long-term carbon flux dataset of gross primary production and ecosystem respiration generated using meta-learning, called MetaFlux. The idea behind meta-learning stems from the need to learn efficiently given sparse data by learning how to learn broad features across tasks to better infer other poorly sampled ones. Using meta-trained ensemble of deep models, we generate global carbon products on daily and monthly timescales at a 0.25-degree spatial resolution from 2001 to 2021, through a combination of reanalysis and remote-sensing products. Site-level validation finds that MetaFlux ensembles have lower validation error by 5–7% compared to their non-meta-trained counterparts. In addition, they are more robust to extreme observations, with 4–24% lower errors. We also checked for seasonality, interannual variability, and correlation to solar-induced fluorescence of the upscaled product and found that MetaFlux outperformed other machine-learning based carbon product, especially in the tropics and semi-arids by 10–40%. Overall, MetaFlux can be used to study a wide range of biogeochemical processes.

54 ENVIRONMENTAL SCIENCES↗

Data for Roebuck et al. (2025), "Differences in dissolved organic matter composition between rivers and estuaries is conserved across freshwater and saltwater coastal regions"

Dissolved organic matter (DOM) in coastal surface waters influences local water quality and is an important component of biogeochemical cycling in coastal systems, but the processes that alter DOM composition along lower reaches of rivers and estuarine waters are poorly understood. Roebuck et al. (2025) leveraged a spatially distributed community sampling effort in coastal ecosystems across two regions to identify broad spatial drivers of surface water DOM composition and identify transferable trends between saltwater and freshwater coastal systems. Samples were collected by community members from 47 locations within the mid-Atlantic and Great Lakes coastal regions.This dataset includes:* A selection of commonly reported absorbance and fluorescence peaks normalized to dissolved organic carbon concentrations* Parallel factor output from the EC1 fluorescence datasets* A selection of commonly reported absorbance and fluorescence peaks * Spectral indices output from matlab script for absorbance and fluorescence datasets* CO2sys calculations of pH changes under varying temperatures and a constant salinity, DIC, and alkalinity concentrationAll data files are plain-text CSV (comma separated value) and no special software is required to read them.

54 ENVIRONMENTAL SCIENCES↗

Satellite solar-induced chlorophyll fluorescence and near-infrared reflectance capture complementary aspects of dryland vegetation productivity dynamics

Mounting evidence indicates dryland ecosystems play an important role in driving the interannual variability and trend of the terrestrial carbon sink. Nevertheless, our understanding of the seasonal dynamics of dryland ecosystem carbon uptake through photosynthesis [gross primary productivity (GPP)] remains relatively limited due in part to the limited availability of long-term data and unique challenges associated with satellite remote sensing across dryland ecosystems. Here, we comprehensively evaluated longstanding and emerging satellite vegetation proxies in their ability to capture seasonal dryland GPP dynamics. Specifically, we evaluated: 1) reflectance-based proxies normalized difference vegetation index (NDVI), soil adjusted vegetation index (SAVI), near infrared reflectance index (NIR v ), and kernel NDVI (kNDVI) from the MODerate resolution Imaging Spectroradiometer (MODIS); and 2) newly available physiologically-based proxy solar-induced chlorophyll fluorescence (SIF) from the TROPOspheric Monitoring Instrument (TROPOMI). As a performance benchmark, we used GPP estimates from a robust network of 21 western United States eddy covariance tower sites that span representative gradients in dryland ecosystem climate and functional composition. We found that NIR v and SIF were the best performing GPP proxies and captured complementary aspects of seasonal GPP dynamics across dryland ecosystem types. NIR v offered better performance than the other proxies across relatively low-productivity, sparsely non-evergreen vegetated sites (R 2 = 0.59 ± 0.13); whereas SIF best captured seasonal dynamics across relatively high-productivity sites, including evergreen-dominated sites (R 2 = 0.74 ± 0.07). Notably, across grass-dominated sites, all reflectance-based proxies (NDVI, SAVI, NIRv and kNDVI) showed significant seasonal bias (hysteresis) that strengthened with the total fraction of woody vegetation cover, likely due to seasonal patterns in woody vegetation reflectance that are unrelated to or decoupled from GPP. In conclusion, future efforts to fully integrate the complementary strengths of NIR v and SIF could significantly improve our understanding and representation of dryland GPP dynamics in satellite-based models.

54 ENVIRONMENTAL SCIENCES↗

Warming shifts ‘worming’: effects of experimental warming on invasive earthworms in northern North America

Climate change causes species range shifts and potentially alters biological invasions. The invasion of European earthworm species across northern North America has severe impacts on native ecosystems. Given the long and cold winters in that region that to date supposedly have slowed earthworm invasion, future warming is hypothesized to accelerate earthworm invasions into yet non-invaded regions. Alternatively, warming-induced reductions in soil water content (SWC) can also decrease earthworm performance. We tested these hypotheses in a field warming experiment at two sites in Minnesota, USA by sampling earthworms in closed and open canopy in three temperature treatments in 2010 and 2012. Structural equation modeling revealed that detrimental warming effects on earthworm densities and biomass could indeed be partly explained by warming-induced reductions in SWC. The direction of warming effects depended on the current average SWC: warming had neutral to positive effects at high SWC, whereas the opposite was true at low SWC. Our results suggest that warming limits the invasion of earthworms in northern North America by causing less favorable soil abiotic conditions, unless warming is accompanied by increased and temporally even distributions of rainfall sufficient to offset greater water losses from higher evapotranspiration.

Science & Technology - Other Topics↗

Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming

Abstract Soil microbial respiration is an important source of uncertainty in projecting future climate and carbon (C) cycle feedbacks. However, its feedbacks to climate warming and underlying microbial mechanisms are still poorly understood. Here we show that the temperature sensitivity of soil microbial respiration ( Q 10 ) in a temperate grassland ecosystem persistently decreases by 12.0 ± 3.7% across 7 years of warming. Also, the shifts of microbial communities play critical roles in regulating thermal adaptation of soil respiration. Incorporating microbial functional gene abundance data into a microbially-enabled ecosystem model significantly improves the modeling performance of soil microbial respiration by 5–19%, and reduces model parametric uncertainty by 55–71%. In addition, modeling analyses show that the microbial thermal adaptation can lead to considerably less heterotrophic respiration (11.6 ± 7.5%), and hence less soil C loss. If such microbially mediated dampening effects occur generally across different spatial and temporal scales, the potential positive feedback of soil microbial respiration in response to climate warming may be less than previously predicted.

54 ENVIRONMENTAL SCIENCES↗

Ground far-red sun-induced chlorophyll fluorescence and vegetation indices in the US Midwestern agroecosystems

Abstract Sun-induced chlorophyll fluorescence (SIF) provides an opportunity to study terrestrial ecosystem photosynthesis dynamics. However, the current coarse spatiotemporal satellite SIF products are challenging for mechanistic interpretations of SIF signals. Long-term ground SIF and vegetation indices (VIs) are important for satellite SIF validation and mechanistic understanding of the relationship between SIF and photosynthesis when combined with leaf- and canopy-level auxiliary measurements. In this study, we present and analyze a total of 15 site-years of ground far-red SIF (SIF at 760 nm, SIF 760 ) and VIs datasets from soybean, corn, and miscanthus grown in the U.S. Corn Belt from 2016 to 2021. We introduce a comprehensive data processing protocol, including different retrieval methods, calibration coefficient adjustment, and nadir SIF footprint upscaling to match the eddy covariance footprint. This long-term ground far-red SIF and VIs dataset provides important and first-hand data for far-red SIF interpretation and understanding the mechanistic relationship between far-red SIF and canopy photosynthesis across various crop species and environmental conditions.

59 BASIC BIOLOGICAL SCIENCES↗

A physically interpretable precursor framework for sub-seasonal prediction of Northern Hemisphere flash flourishing

Flash flourishing describes rapid vegetation increases that can quickly reshape land–atmosphere exchanges and impacts on ecosystem, yet its large-scale precursors, circulation context, and sub-seasonal predictability remain poorly understood. Here, we identified onset-stage circulation regimes across northern extratropical latitudes (NEL; >30°N) using 200 and 1000 hPa geopotential height, and examined their regional expressions over eastern Asia, western North America, and Europe. Flash flourishing onset in East Asian was associated with a baroclinic circulation regime and was preceded by a North Atlantic sea surface temperature (SST) precursor at a four-pentad lead. In contrast, onset in western North American and European preferentially occurred under barotropic regimes, preconditioned by Great Plains soil moisture at three-pentad lead and North Atlantic SST at a four-pentad lead, respectively. Ridge regression forecasts revealed regime-dependent sub-seasonal predictability, with mean out-of-sample R 2 exceeding 0.3 up to lead times of two pentads in East Asia, three pentads in western North America, and four pentads in Europe. Together, these findings established a mechanistic and regionally specific framework for anticipating rapid vegetation greening at sub-seasonal timescales.

Kong, Xiangxu [Nanjing Univ. of Information Scienc↗

Tradeoffs in forest resilience to satellite-based estimates of water and productivity losses

Climate change is expected to intensify the global hydrological cycle via increased evapotranspiration (ET). Changes in ET have important consequences for water-related ecosystem services as well as for forest productivity. Forests play a critical role in ET: active trees sequester carbon at the expense of losing water, yet if they are not active, water remains in the trees, but productivity stalls. Here, we estimated the capacity of forests to recover (resilience) from extreme water or productivity losses based on modeled ET through remote sensing methods across the conterminous USA. Results show there is a spatial tradeoff in resilience to water or productivity losses. Forests were more resilient to water loss in the drier west, and more resilient to productivity loss in the wetter east. Still, resilience was highly heterogeneous across the continent. Projections under climate change indicate both declines and increases of up to 13% in forest resilience, with broad regional trends but high spatial heterogeneity within regions. This study brings crucial satellite-based insights on how water dynamics, and consequentially productivity and water provision in forests, might be impacted by climate change.

54 ENVIRONMENTAL SCIENCES↗

Changes in land use driven by urbanization impact nitrogen cycling and the microbial community composition in soils

Transition of populations from rural to urban living causes landscape changes and alters the functionality of soil ecosystems. It is unclear how this urbanization disturbs the microbial ecology of soils and how the disruption influences nitrogen cycling. In this study, microbial communities in turfgrass-grown soils from urban and suburban areas around Xiamen City were compared to microbial communities in the soils from rural farmlands. The potential N 2 O emissions, potential denitrification activity, and abundances of denitrifiers were higher in the rural farmland soils compared with the turfgrass soils. Ammonia oxidizing archaea (AOA) were more abundant than ammonia oxidizing bacteria (AOB) in turfgrass soils. Within turfgrass soils, the potential nitrification activities and AOA abundances were higher in the urban than in the suburban soils. These results indicate a more pivotal role of AOA in nitrification, especially in urban soils. Microbial community composition was distinctly grouped along urbanization categories (urban, suburban, and rural) classified according to the population density, which can in part be attributed to the differences in soil properties. These observed changes could potentially have a broader impact on soil nutrient availability and greenhouse gas emissions.

59 BASIC BIOLOGICAL SCIENCES↗

Quantifying vegetation and canopy structural complexity from terrestrial LiDAR data using the FORESTR R package

Terrestrial LiDAR (light detection and ranging) technologies have created new means of quantifying forest canopy structure, allowing not only the estimation of biomass, but also descriptions of the position and variability in canopy elements in space. Such measures provide novel structural information broadly useful to ecologists. There is a growing need for both a detailed taxonomy of forest canopy structural complexity (CSC) and open, transparent, and flexible tools to quantify complexity in ways that will advance foundational ecological knowledge of structure-function relationships. The CSC taxonomy we present groups structural descriptors into five categories: leaf area and density, canopy height, canopy arrangement, canopy openness, and canopy variability. This paper also introduces the r package forestr, the first open-source r package for the calculation of CSC metrics from terrestrial LiDAR data. The r package forestr is an analysis toolbox that works with portable canopy LiDAR (PCL) data and other pixelated/voxelized point clouds derived from terrestrial LiDAR scanning (TLS) data to calculate CSC metrics of interest to ecologists, modellers, forest managers, and remote sensing scientists.

52 ecosystem↗

Intelligent Buildings of the Future: Cyberaware, Deep Learning Powered, and Human Interacting

This study discuss, intelligent buildings are quickly becoming cohesive and integral entities of cyber-physical ecosystems. Modern buildings adapt to internal and external elements and thrive on ever increasing data sources such as ubiquitous smart devices and sensors while mimicking various approaches previously known in software, hardware, and bio inspired systems. This article provides an overview of intelligent buildings of the future from a range of perspectives. First, a brief overview of prospects of U.S. and world energy consumption, concepts of smart buildings as integral entities of smart grids is presented. This is followed by a discussion of the role of connectivity and interoperability as well as current issues and solutions in the areas of security, resilience, and humans in realm of intelligent buildings. The article dives into detail about the intelligence aspect of intelligent buildings of the future. The learning and predictive Artificial Intelligence (AI) techniques behind many of the concepts of intelligent buildings are reviewed, including the latest techniques such as deep learning. As a concrete application of AI in the realm of intelligent buildings, prediction of energy consumption/load/demand, which is a much researched application of AI in the realm of intelligent buildings, is elaborated. The discussion is focused on most recent advancements of AI based demand prediction and the overview consists of existing research and a case study conducted by the authors for deep learning based demand prediction. Then, the article discusses the role of humans in intelligent buildings. Different types of human-building interactions are identified. Further, the article presents how each type of human-building interaction can benefit the overall control of intelligent buildings. The section is concluded by elaborating a case study conducted by the authors to achieve effective and efficient human-building interaction. The article is concluded with compilation of future insights based on latest technological advancements in U.S. industry and government.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

On the predictability of turbulent fluxes from land: PLUMBER2 MIP experimental description and preliminary results

Accurate representation of the turbulent exchange of carbon, water, and heat between the land surface and the atmosphere is critical for modelling global energy, water, and carbon cycles in both future climate projections and weather forecasts. Evaluation of models' ability to do this is performed in a wide range of simulation environments, often without explicit consideration of the degree of observational constraint or uncertainty and typically without quantification of benchmark performance expectations. We describe a Model Intercomparison Project (MIP) that attempts to resolve these shortcomings, comparing the surface turbulent heat flux predictions of around 20 different land models provided with in situ meteorological forcing evaluated with measured surface fluxes using quality-controlled data from 170 eddy-covariance-based flux tower sites. Predictions from seven out-of-sample empirical models are used to quantify the information available to land models in their forcing data and so the potential for land model performance improvement. Sites with unusual behaviour, complicated processes, poor data quality, or uncommon flux magnitude are more difficult to predict for both mechanistic and empirical models, providing a means of fairer assessment of land model performance. When examining observational uncertainty, model performance does not appear to improve in low-turbulence periods or with energy-balance-corrected flux tower data, and indeed some results raise questions about whether the energy balance correction process itself is appropriate. In all cases the results are broadly consistent, with simple out-of-sample empirical models, including linear regression, comfortably outperforming mechanistic land models. In all but two cases, latent heat flux and net ecosystem exchange of CO 2 are better predicted by land models than sensible heat flux, despite it seeming to have fewer physical controlling processes. Land models that are implemented in Earth system models also appear to perform notably better than stand-alone ecosystem (including demographic) models, at least in terms of the fluxes examined here. The approach we outline enables isolation of the locations and conditions under which model developers can know that a land model can improve, allowing information pathways and discrete parameterisations in models to be identified and targeted for future model development.

54 ENVIRONMENTAL SCIENCES↗

Climate change alters slug abundance but not herbivory in a temperate grassland

Climate change will significantly impact the world’s ecosystems, in part by altering species interactions and ecological processes, such as herbivory and plant community dynamics, which may impact forage quality and ecosystem production. Yet relatively few field experimental manipulations assessing all of these parameters have been performed to date. To help fill this knowledge gap, we evaluated the effects of increased temperature (+3°C day and night, year-round) and precipitation (+30% of mean annual rainfall) on slug herbivory and abundance and plant community dynamics biweekly in a pasture located in central Kentucky, U.S.A. Warming increased slug abundance once during the winter, likely due to improving conditions for foraging, whereas warming reduced slug abundance at times in late spring, mid-summer, and early fall (from 62–95% reduction depending on month). We found that warming and increased precipitation did not significantly modify slug herbivory at our site, despite altering slug abundance and affecting plant community composition and forage quality. Climate change will alter seasonal patterns of slug abundance through both direct effects on slug biology and indirect effects mediated by changes in the plant community, suggesting that pasture management practices may have to adapt.

59 BASIC BIOLOGICAL SCIENCES↗

Evaluation of VEGETATION and PROBA-V Phenology Using PhenoCam and Eddy Covariance Data

High-quality retrieval of land surface phenology (LSP) is increasingly important for understanding the effects of climate change on ecosystem function and biosphere–atmosphere interactions. We analyzed four state-of-the-art phenology methods: threshold, logistic-function, moving-average and first derivative based approaches, and retrieved LSP in the North Hemisphere for the period 1999–2017 from Copernicus Global Land Service (CGLS) SPOT-VEGETATION and PROBA-V leaf area index (LAI) 1 km V2.0 time series. We validated the LSP estimates with near-surface PhenoCam and eddy covariance FLUXNET data over 80 sites of deciduous forests. Results showed a strong correlation (R 2 > 0.7) between the satellite LSP and ground-based observations from both PhenoCam and FLUXNET for the timing of the start (SoS) and R 2 > 0.5 for the end of season (EoS). The threshold-based method performed the best with a root mean square error of ~9 d with PhenoCam and ~7 d with FLUXNET for the timing of SoS (30th percentile of the annual amplitude), and ~12 d and ~10 d, respectively, for the timing of EoS (40th percentile).

47 OTHER INSTRUMENTATION↗

Carcass appearance does not influence scavenger avoidance of carnivore carrion

Abstract The selection or avoidance of certain carrion resources by vertebrate scavengers can alter the flow of nutrients in ecosystems. Evidence suggests higher trophic level carrion is scavenged by fewer vertebrate species and persists longer when compared to lower trophic level carrion, although it is unclear how scavengers distinguish between carcasses of varying species. To investigate carnivore carrion avoidance and explore sensory recognition mechanisms in scavenging species, we investigated scavenger use of intact and altered (i.e., skin, head, and feet removed) coyote— Canis latrans (carnivore) and wild pig— Sus scrofa (omnivore) carcasses experimentally placed at the Savannah River Site, SC, USA. We predicted carnivore carcasses would persist longer due to conspecific and intraguild scavenger avoidance. Further, we hypothesized visually modifying carcasses would not reduce avoidance of carnivore carrion, given scavengers likely depend largely on chemical cues when assessing carrion resources. As expected, mammalian carnivores largely avoided scavenging on coyote carcasses, resulting in carnivore carcasses having longer depletion times than wild pig carcasses at intact and altered trials. Therefore, nutrients derived from carnivore carcasses are not as readily incorporated into higher trophic levels and scavengers largely depend on olfactory cues when assessing benefits and risks associated with varying carrion resources.

60 APPLIED LIFE SCIENCES↗

Building an open source software ecosystem for cross-disciplinary plasma research and education

Software is crucial to all areas of modern plasma science research. Laboratory plasma physicists use software to interpret plasma diagnostics, analyze experimental results, and glean insights using advanced techniques from data science. Space scientists use software to reduce and understand in situ observations. Numericists use software to simulate the behavior of laboratory, heliospheric, and astrophysical plasmas, and then analyze or visualize the results. Theorists use symbolic manipulation software to perform or check derivations. Cross-disciplinary research and cross-comparisons between experiments, observations, simulations, and theories all require software. Despite our heavy reliance on software, funding agencies have traditionally had few avenues available to support development of general purpose research software infrastructure.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗