Glycosyl residue composition of cell wall extracts from tillers of switchgrass WT and PvGAUT4-KD plants
Glycosyl residue composition of cell wall extracts from tillers of switchgrass WT and PvGAUT4-KD plants
bio engineered↗
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Glycosyl residue composition and total carbohydrate in cell wall extracts from WT and PvGAUT4-KD lines
Glycosyl residue composition and total carbohydrate in cell wall extracts from WT and PvGAUT4-KD lines
bio engineered↗
Glycosyl residue composition of cell wall extracts from stems of P. deltoides WT, vector control and PdGAUT4-KD plants
Glycosyl residue composition of cell wall extracts from stems of P. deltoides WT, vector control and PdGAUT4-KD plants
bio engineered↗
Glycosyl residue composition and total carbohydrate of cell wall extracts from WT and PdGAUT4-KD lines
Glycosyl residue composition and total carbohydrate of cell wall extracts from WT and PdGAUT4-KD lines
bio engineered↗
Thermophilic Geobacillus WSUCF1 Secretome for Saccharification of Ammonia Fiber Expansion and Extractive Ammonia Pretreated Corn Stover
A thermophilic Geobacillus bacterial strain, WSUCF1 contains different carbohydrate-active enzymes (CAZymes) capable of hydrolyzing hemicellulose in lignocellulosic biomass. We used proteomic, genomic, and bioinformatic tools, and genomic data to analyze the relative abundance of cellulolytic, hemicellulolytic, and lignin modifying enzymes present in the secretomes. Results showed that CAZyme profiles of secretomes varied based on the substrate type and complexity, composition, and pretreatment conditions. The enzyme activity of secretomes also changed depending on the substrate used. The secretomes were used in combination with commercial and purified enzymes to carry out saccharification of ammonia fiber expansion (AFEX)-pretreated corn stover and extractive ammonia (EA)-pretreated corn stover. When WSUCF1 bacterial secretome produced at different conditions was combined with a small percentage of commercial enzymes, we observed efficient saccharification of EA-CS, and the results were comparable to using a commercial enzyme cocktail (87% glucan and 70% xylan conversion). It also opens the possibility of producing CAZymes in a biorefinery using inexpensive substrates, such as AFEX-pretreated corn stover and Avicel, and eliminates expensive enzyme processing steps that are used in enzyme manufacturing. Implementing in-house enzyme production is expected to significantly reduce the cost of enzymes and biofuel processing cost.
Bhalla, Aditya↗
Canadian Oil Sands Extraction and Upgrading: A Synthesis of the Data on Energy Consumption, CO 2 Emissions, and Supply Costs
As Canadian crude bitumen production from oil sands has increased in recent decades, the nation’s oil and gas industry has become a significant contributor to national greenhouse gas emissions. Canada has developed carbon emission reduction targets to meet its Nationally Determined Contributions and Mid-Century Strategy goals. A detailed profile of energy consumption pathways in the oil sands industry is necessary to identify potential areas of improvement and to monitor progress toward meeting emissions reduction targets. Much of the existing literature for oil sands modeling provides input assumptions with different technological boundaries. For a set of oil sands extraction and upgrading technologies, this study first reviews the literature and then quantifies energy input requirements, CO 2 emissions, and operating costs for a set of consistent technological boundaries and energy units. Summary results refer to requirements and costs at the production facility, excluding transportation and blending costs. An energy system diagram of oil sands production that matches these boundaries is provided, which can be used by integrated assessment models, oil sands companies, and government ministries to evaluate the present and future energy consumption and emissions pathways of the oil sands industry.
02 PETROLEUM↗
Solid Wastes from Geothermal Energy Production and Implications for Direct Lithium Extraction
Direct lithium extraction (DLE) of brines after geothermal power production offers opportunities to produce environmentally benign “green” lithium; however, some environmental impact is inevitable. We examined solid waste production at geothermal power plants in southern California that are also locations for planned DLE facilities. Currently, the geothermal plants in this region produce approximately 79,800 metric tons (wet weight) per year of solid waste, which represents about 28 metric tons per GWh of net electricity production or approximately 500 mg solids per kg geothermal brine. Approximately 15% of this waste requires management as hazardous waste. Solids produced during power production represent about 0.2% of the total dissolved solids in the brine. Lithium production will require the removal of silica, iron, and other metals as part of the DLE process. Using a mass balance approach, we calculate that precipitation of silica and metals could produce up to an additional 6800 mg solids per kg brine. Calcium occurs at very high concentrations, and the amount of solids disposed in landfills will be dependent on the amount of calcium removed during lithium recovery. Our analysis shows that evaluation of brine chemistry in the context of the DLE process is useful for evaluating the potential solid waste impacts of producing lithium from brines.
42 ENGINEERING↗
Chitosan Coating Functionalized with Flaxseed Oil and Green Tea Extract as a Bio-Based Solution for Beef Preservation
Ecological and safe packaging solutions arise as pivotal points in the development of an integrated system for sustainable meat production. The aim of this study was to assess the effect of a combined chitosan (Ch) + green tea extract (GTE) + essential oil (thyme oil, TO; flaxseed oil, FO; or oregano oil, OO) coating on the safety and quality of vacuum-packaged beef during storage at 4 °C. An optimized bio-based coating formulation was selected (2% Ch + 2% GTE + 0.1% FO) to be applied to three fresh beef cuts (shoulder, Sh; knuckle, Kn; Striploin, St) based on its pH (5.8 ± 0.1), contact angle (22.3 ± 0.4°) and rheological parameters (viscosity = 0.05 Pa.s at shear rate > 20 s−1). Shelf-life analysis showed that the Ch–GTE–FO coating delayed lipid oxidation and reduced total viable counts (TVC) and Enterobacteriaceae growth compared with uncoated beef samples over five days. In addition, Ch–GTE–FO coating decreased total color changes of beef samples (e.g., ∆E* = 9.84 and 3.94, for non-coated and coated Kn samples, respectively) for up to five days. The original textural parameters (hardness, adhesiveness and springiness) of beef cuts were maintained during storage when Ch–GTE–FO coating was applied. Based on the physicochemical and microbial characterization results, the combination of the Ch–GTE–FO coating developed was effective in preserving the quality of fresh beef cuts during refrigerated storage along with vacuum packaging.
Mendes, Cíntia G.↗
Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi
Many macrofungi are impractical or impossible to culture. Consequently, DNA for long-read sequencing required for the assembly of high-quality genomes must be isolated from samples taken from the environment. Collection is often in remote locations, limiting the options for stabilising samples to methods that do not require refrigeration. Fungi contain species-specific arrays of metabolites that may complicate purification techniques and call for judgement to be made to apply appropriate modifications to the DNA extraction protocol in specific cases. The protocols and commentary we describe are informed by the preparation of DNA from a range of Australasian ectomycorrhizal and saprotrophic macrofungi. We collect samples into isopropanol at ambient temperature and employ a strategy of chromatin isolation followed by the sequential removal of unwanted molecular components to purify DNA.
Burgoyne, Leigh A↗
Removal of Iron from Pyrite-Rich Coal Refuse by Calcination and Magnetic Separation for Hydrometallurgical Extraction of Rare Earth Elements
In the metallurgical extraction of rare earth elements (REEs), the ratio of contaminant ions to REEs in the leachate dictates the cost and operational efficiency of the downstream processes. The current study investigated the potential iron contamination removal from the feed to the hydrometallurgical process by calcination followed by magnetic separation. The 2.20 specific gravity sink fraction of Baker coal seam coarse refuse was pulverized to finer than 180 μm, calcined at various temperatures, and separated into magnetic and non-magnetic fractions using a wet high-intensity magnetic separator at different field strengths. The untreated feed, calcined products, and their subsequent magnetic and non-magnetic fractions were subjected to acid leaching tests with 1.2 M sulfuric acid at 75 °C and 1% w/v solids concentration. The recovery of light and heavy rare earth elements (LREEs and HREEs, respectively) along with the concentration of common contaminant ions (Al, Ca, and Fe) were measured as output variables. The weight percent of magnetic material was maximized at approximately 29% by calcination at a temperature of 400 °C. Magnetic removal of this fraction using a field strength of 1.15 Tesla resulted in the rejection of 81% of the iron. Leaching of the magnetic fraction provided significantly higher Fe recovery relative to untreated feed material and the non-magnetic fraction. The non-magnetic fraction was subsequently calcined at 600 °C to dehydroxylate the clays and released the REE minerals in the same manner as the treatment of the original coarse refuse material. A comparison of the leachate elemental concentrations resulting from the leaching of both the calcined non-magnetic and original coarse refuse showed only a slight reduction in the iron content from the non-magnetic material. This finding combined with the REE loss in the magnetic fraction resulted in the conclusion that the magnetic removal step was unfavorable.
58 GEOSCIENCES↗
Thresholding Analysis and Feature Extraction from 3D Ground Penetrating Radar Data for Noninvasive Assessment of Peanut Yield
This study explores the efficacy of utilizing a novel ground penetrating radar (GPR) acquisition platform and data analysis methods to quantify peanut yield for breeding selection, agronomic research, and producer management and harvest applications. Sixty plots comprising different peanut market types were scanned with a multichannel, air-launched GPR antenna. Image thresholding analysis was performed on 3D GPR data from four of the channels to extract features that were correlated to peanut yield with the objective of developing a noninvasive high-throughput peanut phenotyping and yield-monitoring methodology. Plot-level GPR data were summarized using mean, standard deviation, sum, and the number of nonzero values (counts) below or above different percentile threshold values. Best results were obtained for data below the percentile threshold for mean, standard deviation and sum. Data both below and above the percentile threshold generated good correlations for count. Correlating individual GPR features to yield generated correlations of up to 39% explained variability, while combining GPR features in multiple linear regression models generated up to 51% explained variability. The correlations increased when regression models were developed separately for each peanut type. This research demonstrates that a systematic search of thresholding range, analysis window size, and data summary statistics is necessary for successful application of this type of analysis. The results also establish that thresholding analysis of GPR data is an appropriate methodology for noninvasive assessment of peanut yield, which could be further developed for high-throughput phenotyping and yield-monitoring, adding a new sensor and new capabilities to the growing set of digital agriculture technologies.
54 ENVIRONMENTAL SCIENCES↗
Extracting Vehicle Trajectories from Partially Overlapping Roadside Radar
This work presents a methodology for extracting vehicle trajectories from six partially-overlapping roadside radars through a signalized corridor. The methodology incorporates radar calibration, transformation to the Frenet space, Kalman filtering, short-term prediction, lane-classification, trajectory association, and a covariance intersection-based approach to track fusion. The resulting dataset contains 79,000 fused radar trajectories over a 26-h period, capturing diverse driving scenarios including signalized intersections, merging behavior, and a wide range of speeds. Compared to popular trajectory datasets such as NGSIM and highD, this dataset offers extended temporal coverage, a large number of vehicles, and varied driving conditions. The filtered leader–follower pairs from the dataset provide a substantial number of trajectories suitable for car-following model calibration. The framework and dataset presented in this work has the potential to be leveraged broadly in the study of advanced traffic management systems, autonomous vehicle decision-making, and traffic research.
33 ADVANCED PROPULSION SYSTEMS↗
Effect of Foot-and-Mouth Disease Virus 2B Viroporin on Expression and Extraction of Mammalian Cell Culture Produced Foot-and-Mouth Disease Virus-like Particles
To improve the production of foot-and-mouth disease (FMD) molecular vaccines, we sought to understand the effects of the FMD virus (FMDV) 2B viroporin in an experimental, plasmid-based, virus-like particle (VLP) vaccine. Inclusion of the FMDV viroporin 2B into the human Adenovirus 5 vectored FMD vaccine enhanced transgene expression despite independent 2B expression negatively affecting cell viability. Evaluating both wildtype 2B and mutants with disrupted viroporin activity, we confirmed that viroporin activity is detrimental to overall transgene expression when expressed independently. However, the incorporation of 2B into an FMD molecular vaccine construct containing a wildtype FMDV 3C protease, a viral encoded protease responsible for processing structural proteins, resulted in enhancement of transgene expression, validating previous observations. This benefit to transgene expression was negated when using the FMDV 3CL127P mutant, which has reduced processing of host cellular proteins, a reversion resulting from 2B viroporin activity. Inclusion of 2B into VLP production constructs also adversely impacted antigen extraction, a possible side effect of 2B-dependent rearrangement of cellular membranes. These results demonstrate that inclusion of 2B enhanced transgene expression when a wildtype 3C protease is present but was detrimental to transgene expression with the 3CL127P mutant. This has implications for future molecular FMD vaccine constructs, which may utilize mutant FMDV 3C proteases.
2B↗
Multiple Explanations for the Single Transit of KIC 5951458 Based on Radial Velocity Measurements Extracted with a Novel Matched-template Technique
Planetary systems that show single-transit events are a critical pathway to increasing the yield of long-period exoplanets from transit surveys. From the primary Kepler mission, KIC 5951458 b (Kepler-456b) was thought to be a single-transit giant planet with an orbital period of 1310 days. However, radial velocity (RV) observations of KIC 5951458 from the HIRES instrument on the Keck telescope suggest that the system is far more complicated. To extract precise RVs for this V≈13 star, we develop a novel matched-template technique that takes advantage of a broad library of template spectra acquired with HIRES. We validate this technique and measure its noise floor to be 4–8 m s{sup −1} (in addition to internal RV error) for most stars that would be targeted for precision RVs. For KIC 5951458, we detect a long-term RV trend that suggests the existence of a stellar companion with an orbital period greater than a few thousand days. We also detect an additional signal in the RVs that is possibly caused by a planetary or brown dwarf companion with mass in the range of 0.6–82 M {sub Jup} and orbital period below a few thousand days. Curiously, from just the data on hand, it is not possible to determine which object caused the single “transit” event. We demonstrate how a modest set of RVs allows us to update the properties of this unusual system and predict the optimal timing for future observations.
79 ASTRONOMY AND ASTROPHYSICS↗
A Method to Extract Spatially Resolved Polycyclic Aromatic Hydrocarbon Emission from Spitzer Spectra: Application to M51
The mid-infrared spectrum contains rich diagnostics to probe the physical properties of galaxies, among which the pervasive emission features from polycyclic aromatic hydrocarbons (PAHs) offer promising means of estimating the star formation rate (SFR) relatively immune from dust extinction. This paper investigates the effectiveness of PAH emission as a SFR indicator on subkiloparsec scales by studying the Spitzer/IRS mapping-mode observations of the nearby grand-design spiral galaxy M51. We present a new approach of analyzing the spatial elements of the spectral data cube that simultaneously maximizes spatial resolution and spatial coverage, while yielding reliable measurements of the total, integrated 5–20 μm PAH emission. We devise a strategy of extracting robust PAH emission using spectra with only partial spectral coverage, complementing missing spectral regions with properly combined mid-infrared photometry. We find that in M51 the PAH emission correlates tightly with the extinction-corrected far-ultraviolet, near-ultraviolet, and Hα emission, from scales of ∼0.4 kpc close to the nucleus to 6 kpc out in the disk of the galaxy, indicating that PAH serves as an excellent tracer of SFR over a wide range of galactic environments. But regional differences exist. Close to the active nucleus of M51 the 6.2 μm feature is weaker, and the overall level of PAH emission is suppressed. The spiral arms and the central star-forming region of the galaxy emit stronger 7.7 and 8.6 μm PAH features than the inter-arm regions.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
A bi-level spatiotemporal clustering approach and its application to drought extraction
We present a novel flexible bi-level spatiotemporal clustering algorithm to extract events based on their intensity and spatiotemporal structures. Our algorithm consists of using (i) a novel space-time k-means clustering to obtain spatiotemporally coherent intensity clusters, and (ii) a density-based spatial clustering of applications with noise (DBSCAN) to spatiotemporally section the intensity clusters into individual events. We discuss the development of the algorithm, the selection, tuning and meaning of the parameters within each step, as well as its validation. Finally, we apply the algorithm to a spatiotemporal drought index, standardized vapor pressure deficit drought index (SVDI), over the continental United States (US) from 1980–2021 and show that it captures historical drought events over the continental United States and their spatiotemporal extents.
17 WIND ENERGY↗
Decreasing wind speed extrapolation error via domain-specific feature extraction and selection
Abstract. Model uncertainty is a significant challenge in the wind energy industry and can lead to mischaracterization of millions of dollars' worth of wind resources. Machine learning methods, notably deep artificial neural networks (ANNs), are capable of modeling turbulent and chaotic systems and offer a promising tool to produce high-accuracy wind speed forecasts and extrapolations. This paper uses data collected by profiling Doppler lidars over three field campaigns to investigate the efficacy of using ANNs for wind speed vertical extrapolation in a variety of terrains, and it quantifies the role of domain knowledge in ANN extrapolation accuracy. A series of 11 meteorological parameters (features) are used as ANN inputs, and the resulting output accuracy is compared with that of both standard log-law and power-law extrapolations. It is found that extracted nondimensional inputs, namely turbulence intensity, current wind speed, and previous wind speed, are the features that most reliably improve the ANN's accuracy, providing up to a 65 % and 52 % increase in extrapolation accuracy over log-law and power-law predictions, respectively. The volume of input data is also deemed important for achieving robust results. One test case is analyzed in depth using dimensional and nondimensional features, showing that the feature nondimensionalization drastically improves network accuracy and robustness for sparsely sampled atmospheric cases.
17 WIND ENERGY↗
GUC CSU X-Band Precipitation Extracted Radar Columns and In-Situ Sensors (RadCLss)
For the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign, a scanning X-Band dual-polarimetric radar provided by Colorado State University (CSU) was deployed to estimate precipitation within the Upper Colorado River Basin. In order to evaluate precipitation estimates from the CSU X-Band Radar (XPRECIPRADAR), radar columns are extracted above field sites of interest to the SAIL campaign. These radar columns are then matched to in-situ sensors at these locations.
54 ENVIRONMENTAL SCIENCES↗