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At least 991 records · Page 55

Protein solubility modeling

A thermodynamic framework (UNIQUAC model with temperature dependent parameters) is applied to model the salt-induced protein crystallization equilibrium, i.e., protein solubility. The framework introduces a term for the solubility product describing protein transfer between the liquid and solid phase and a term for the solution behavior describing deviation from ideal solution. Protein solubility is modeled as a function of salt concentration and temperature for a four-component system consisting of a protein, pseudo solvent (water and buffer), cation, and anion (salt). Two different systems, lysozyme with sodium chloride and concanavalin A with ammonium sulfate, are investigated. Comparison of the modeled and experimental protein solubility data results in an average root mean square deviation of 5.8%, demonstrating that the model closely follows the experimental behavior. Model calculations and model parameters are reviewed to examine the model and protein crystallization process. Copyright 1999 John Wiley & Sons, Inc.

Proteins/chemistry↗

Towards a distributed information architecture for avionics data

Avionics data at the National Aeronautics and Space Administration's (NASA) Jet Propulsion Laboratory (JPL consists of distributed, unmanaged, and heterogeneous information that is hard for flight system design engineers to find and use on new NASA/JPL missions. The development of a systematic approach for capturing, accessing and sharing avionics data critical to the support of NASA/JPL missions and projects is required. We propose a general information architecture for managing the existing distributed avionics data sources and a method for querying and retrieving avionics data using the Object Oriented Data Technology (OODT) framework. OODT uses XML messaging infrastructure that profiles data products and their locations using the ISO-11179 data model for describing data products. Queries against a common data dictionary (which implements the ISO model) are translated to domain dependent source data models, and distributed data products are returned asynchronously through the OODT middleware. Further work will include the ability to 'plug and play' new manufacturer data sources, which are distributed at avionics component manufacturer locations throughout the United States.

Information architecture↗

Centrifugal acceleration of the polar wind

The effect of parallel ion acceleration associated with convection was first applied to energization of test particle polar ions by Cladis (1986). However, this effect is typically neglected in 'self-consistent' models of polar plasma outflow, apart from the fluid simulation by Swift (1990). Here we include approximations for this acceleration, which we broadly characterize as centrifugal in nature, in our time-dependent, semikinetic model of polar plasma outflow and describe the effects on the bulk parameter profiles and distribution functions of H+ and O+. For meridional convection across the pole the approximate parallel force along a polar magnetic field line may be written as F(sub cent, pole) = 1.5m(E(sub i))/B(sub i))squared (r(squared)/r(sup 3)(sub i)) where m is ion mass, r is geometric distance; and E(sub i), B(sub i) and r(sub i) refer to the electric and magnetic field magnitudes and geocentric distance at the ionosphere, respectively. For purely longitudinal convection along a constant L shell the parallel force is F(cent. long) = F(sub cent, pole)(1 - (r/(r(sub i)L))(sup 3/2)/(1 - 3r/(4 r(sub i)L))(sup 5/2). For high latitudes the difference between these two cases is relatively unimportant below approximately 5 R(sub E). We find that the steady state O+ bulk velocities and parallel temperatures strongly increase and decrease, respectively, with convection strength. In particular, the bulk velocities increase from near 0 km/s at 4000 km altitude to approximately 10 km/s at 5 R(sub E) geocentric distance for 50-mV/m ionospheric convection electric field. However, the centrifugal effect on the steady O+ density profiles depends on the exobase ion and electron temperatures: for low-base temperatures (T(sub i) = T(sub e) = 3000 K) the O+ density at high altitudes increases greatly with convection, while for higher base temperatures (T(sub i) = 5000 K, T(sub e) = 9000 K), the high-altitude O+ density decreases somewhat as convection is enhanced. The centrifugal force further has a pronounced effect on the escaping O+ flux, especially for cool exobase conditions; as referenced to the 4000-km altitude, the steady state O+ flux increases from 10(exp 5) ions/sq cm/s when the ionospheric convection field E(sub i) = 0 mV/m to approximately 10(exp 7) ions/sq cm/s when E(sub i) = 100 mV/m. The centrifugal effect also decreases the time scale for approach to steady-state. For example, in the plasma expansion for T(sub i) = T(sub e) = 3000 K, the O+ density at 7 R(sub E) reaches only 10(exp -7) of it final value approximately 1.5 hours after expansion onset for E(sub i) = 0. For meridional convection driven by E(sub i) = 50 mV/m, the density at the same time after initial injection is 30-50% of its asymptotic level. The centrifugal acceleration described here is a possible explanation for the large (up to approximately 10 km/s or more) o+ outflow velocities observed in the midlatitude polar magnetosphere with the Dynamics Explorer 1 and Akebono spacecraft.

Horwitz, J. L.↗

Responses in the Subpolar North Atlantic in Two Climate Model Sensitivity Experiments with Increased Stratospheric Aerosols

Abstract The subpolar North Atlantic (SPNA) shows contrasting responses in two sensitivity experiments with increased stratospheric aerosols, offering insight into the physical processes that may impact the Atlantic meridional overturning circulation (AMOC) in a warmer climate. In one, the upper ocean becomes warm and salty, but in the other it becomes cold and fresh. The changes are accompanied by diverging AMOC responses. The first experiment strengthens the AMOC, opposing the weakening trend in the reference simulation. The second experiment shows a much smaller impact. Both simulations use the Community Earth System Model with the Whole Atmosphere Community Climate Model component (CESM-WACCM) but differ in model versions and stratospheric aerosol specifications. Despite both experiments using similar approaches to increase stratospheric aerosols to counteract the rising global temperature, the contrasting SPNA and AMOC responses indicate a considerable dependency on model physics, climate states, and model responses to forcings. This study focuses on examining the physical processes involved with the impact of stratospheric aerosols on the SPNA salinity changes and their potential connections with the AMOC and the Arctic. We find that in both cases, increased stratospheric aerosols act to enhance the SPNA upper-ocean salinity by reducing freshwater export from the Arctic, which is closely tied to the Arctic sea ice changes. The impact on AMOC is primarily through the thermal component of the surface buoyancy fluxes, with negligible contributions from the freshwater component. These experiments shed light on the physical processes that dictate the important connections between the SPNA, the Arctic, the AMOC, and their subsequent feedbacks on the climate system.

54 ENVIRONMENTAL SCIENCES↗

Cloud draft structure and trace gas transport

During the second Amazon Boundary Layer Experiment (ABLE 2B), meteorological observations, chemical measurements, and model simulations are utilized in order to interpret convective cloud draft structure and to analyze its role in transport and vertical distribution of trace gases. One-dimensional photochemical model results suggest that the observed poststorm changes in ozone concentration can be attributed to convective transports rather than photochemical production and the results of a two-dimensional time-dependent cloud model simulation are presented for the May 6, 1987 squall system. The mesoscale convective system exhibited evidence of significant midlevel detrainment in addition to transports to anvil heights. Chemical measurements of O3 and CO obtained in the convective environment are used to predict photochemical production within the troposphere and to corroborate the cloud model results.

Scala, John R.↗

The BESS Program

In nine flights between 1993 and 2002, the Balloon Borne Experiment with a Superconducting Spectrometer (BESS) has measured the energy spectrum of cosmic-ray antiprotons between 0.18 and 4.20 GeV, and the spectra of protons and helium to several hundred GeV. BESS has also placed stringent upper limits on the existence of antihelium and antiduterons. Above about 1 GeV, models in which antiprotons are secondary products of the interactions of primary cosmic rays with the ISM agree with the BESS spectrum. Below 1 GeV, BESS data suggest the presence of an additional source of antiprotons. The antiproton/proton ratios measured between 1993 and 1999, during the Sun's positive-polarity phase, are consistent with simple models of solar modulation. Results from the 2000 flight, following the solar magnetic field reversal, show a sudden increase in the antiproton/proton ratio and tend to favor a charge-sign-dependent drift model. To extend BESS measurements to lower energies, a new instrument, BESS-Polar, is under construction for a flight from Antarctica in 2004.

Mitchell, J. W.↗

Evaluation of Mid-Size Male Hybrid III Models for use in Spaceflight Occupant Protection Analysis

In an effort to improve occupant safety during dynamic phases of spaceflight, the National Aeronautics and Space Administration (NASA) has worked to develop occupant protection standards for future crewed spacecraft. One key aspect of these standards is the identification of injury mechanisms through anthropometric test devices (ATDs). Within this analysis, both physical and computational ATD evaluations are required to reasonably encompass the vast range of loading conditions any spaceflight crew may encounter. In this study the accuracy of publically available mid-size male HIII ATD finite element (FE) models are evaluated within applicable loading conditions against extensive sled testing performed on their physical counterparts. Methods: A series of sled tests were performed at the Wright Patterson Air force Base (WPAFB) employing variations of magnitude, duration, and impact direction to encompass the dynamic loading range for expected spaceflight. FE simulations were developed to the specifications of the test setup and driven using measured acceleration profiles. Both fast and detailed FE models of the mid-size male HIII were ran to quantify differences in their accuracy and thus assess the applicability of each within this field. Results: Preliminary results identify the dependence of model accuracy on loading direction, magnitude, and rate. Additionally the accuracy of individual response metrics are shown to vary across each model within evaluated test conditions. Causes for model inaccuracy are identified based on the observed relationships. Discussion: Computational modeling provides an essential component to ATD injury metric evaluation used to ensure the safety of future spaceflight occupants. The assessment of current ATD models lays the groundwork for how these models can be used appropriately in the future. Identification of limitations and possible paths for improvement aid in the development of these effective analysis tools.

Putnam, Jacob B.↗

Evaluation of Mid-Size Male Hybrid III Models for use in Spaceflight Occupant Protection Analysis

Introduction: In an effort to improve occupant safety during dynamic phases of spaceflight, the National Aeronautics and Space Administration (NASA) has worked to develop occupant protection standards for future crewed spacecraft. One key aspect of these standards is the identification of injury mechanisms through anthropometric test devices (ATDs). Within this analysis, both physical and computational ATD evaluations are required to reasonably encompass the vast range of loading conditions any spaceflight crew may encounter. In this study the accuracy of publically available mid-size male HIII ATD finite element (FE) models are evaluated within applicable loading conditions against extensive sled testing performed on their physical counterparts. Methods: A series of sled tests were performed at the Wright Patterson Air force Base (WPAFB) employing variations of magnitude, duration, and impact direction to encompass the dynamic loading range for expected spaceflight. FE simulations were developed to the specifications of the test setup and driven using measured acceleration profiles. Both fast and detailed FE models of the mid-size male HIII were ran to quantify differences in their accuracy and thus assess the applicability of each within this field. Results: Preliminary results identify the dependence of model accuracy on loading direction, magnitude, and rate. Additionally the accuracy of individual response metrics are shown to vary across each model within evaluated test conditions. Causes for model inaccuracy are identified based on the observed relationships. Discussion: Computational modeling provides an essential component to ATD injury metric evaluation used to ensure the safety of future spaceflight occupants. The assessment of current ATD models lays the groundwork for how these models can be used appropriately in the future. Identification of limitations and possible paths for improvement aid in the development of these effective analysis tools.

Putnam, J.↗

Modular Linear Thermoviscoelastic Model

Time-dependent, viscoelastic responses of materials like polymers and glasses have long been studied. As such, a variety of models have been put forth to describe the behavior including simple rheological models (e.g. Maxwell, Kelvin), linear "fading memory" theories, and hereditary integral based linear thermal viscoelastic approaches as well as more recent nonlinear theories that are either integral, fictive temperature, or differential internal state variable based. The current work details a new LINEAR_THERMOVISCOELASTIC model that has been added to LAME. This formulation represents a viscoelastic theory that neglects some of the phenomenological details of the PEC/SPEC models in favor of efficiency and simplicity. Furthermore, this new model is a first step towards developing "modular" viscoelastic capabilities akin to those available with hardening descriptions for plasticity models in LAME. Specifically, multiple different (including user-defined) shift-factor forms are implemented with each being easily selected via parameter specification rather than requiring distinct material models.

36 MATERIALS SCIENCE↗

The Discrepancy Between Measured and Modeled Downwelling Solar Irradiance at the Ground: Dependence on Water Vapor

Moderate resolution spectra of the downwelling solar irradiance at the ground in north central Oklahoma were measured during the Department of Energy Atmospheric Radiation Measurement Program Intensive Observation Period in the fall of 1997. Spectra obtained under-cloud-free conditions were compared with calculations using a coarse resolution radiative transfer model to examine the dependency of model-measurement bias on water vapor. It was found that the bias was highly correlated with water vapor and increased at a rate of 9 Wm per cm of water. The source of the discrepancy remains undetermined because of the complex dependencies of other variables, most notably aerosol optical depth, on water vapor.

Pilewski, P.↗

The Discrepancy Between Measured and Modeled Downwelling Solar Irradiance at the Ground: Dependence on Water Vapor

Moderate resolution spectra of the downwelling solar irradiance at the around in north central Oklahoma were measured during the Department of Energy Atmospheric Radiation Measurement Program Intensive Observation Period in the fall of 1997. Spectra obtained under cloud-free conditions were compared with calculations using a coarse resolution radiative transfer model to examine the dependency of model-measurement bias on water vapor. It was found that the bias was highly correlated with water vapor and increased at a rate of 9 W/sq m per cm of water. The source of the discrepancy remains undetermined because of the complex dependencies of other variables, most notably aerosol optical depth, on water vapor.

Pilewskie, P.↗

The Discrepancy Between Measured and Modeled Downwelling Solar Irradiance at the Ground: Dependence on Water Vapor

Moderate resolution spectra of the downwelling solar irradiance at the ground in north central Oklahoma were measured during the Department of Energy Atmospheric Radiation Measurement Program Intensive Observation Period in the fall of 1997. Spectra obtained under cloud-free conditions were compared with calculations using a coarse resolution radiative transfer model to examine the dependency of model-measurement bias on water vapor. It was found that the bias was highly correlated with water vapor and increased at a rate of 9 Wm(exp -2) per cm of water. The source of the discrepancy remains undetermined because of the complex dependencies of other variables, most notably aerosol optical depth, on water vapor.

Pilewskie, P.↗

The lunar conductivity profile and the nonuniqueness of electromagnetic data inversion.

A review of the theory for the electromagnetic functional used to date to determine the lunar conductivity profile from spectral analyses of lunar magnetometer data. The 'hard' boundary condition used by Sonett et al. (1971) and others appears to be a good approximation for the sunlit lunar hemisphere. The use of the spectral data in conjunction with the functional to find a least squares conductivity profile is examined from the point of view of the nonuniqueness of nonlinear estimation. An unsuccessful search was carried out to find models that were both geophysically reasonable and consistent with the data. It is asserted that the failure to find these models is due to the inadequacy of the functional. Of the models generated, those that best fit the data all have a conductivity peak at a depth of 240 km similar to that of the model discussed by Sonett et al. However, all of these models are quite distinct elsewhere in the profile. It is shown how such models are dependent on both the nature of the functional as well as the initial guess in the least squares procedure. A correlation analysis shows that the only resolvable features from this type of model are a low conductivity crust, a high conductivity peak of limited radial extent, and a low conductivity zone beneath the peak.

Phillips, R. J.↗

Precise Measurements of the Cosmic Ray Antiproton Spectrum with BESS Including the Effects of Solar Modulation

The Balloon Borne Experiment with a Superconducting Spectrometer (BESS) has measured the energy spectrum of cosmic-ray antiprotons between 0.18 and 4.20 GeV in eight flights between 1993 and 2002. Above about 1 GeV, models in which antiprotons are secondary products of the interactions of primary cosmic rays with the interstellar gas agree with the BESS antiproton spectrum. Below 1 GeV, the data show a possible excess antiproton flux compared to secondary model predictions, suggesting the presence of an additional source of antiprotons. The antiproton/proton ratios measured between 1993 and 1999, during the Sun's positive-polarity phase, are consistent with simple models of solar modulation. However, results from the 2000 flight, following the solar magnetic field reversal, show a sudden increase in the antiproton/proton ratio and tend to favor a charge-sign-dependent drift model. To extend BESS measurements to lower energies, an evolutionary instrument, BESS-Polar, is under construction for polar flight in 2004.

Mitchell, J. W.↗

X-ray Binary Luminosity Function Scaling Relations for Local Galaxies Based on Subgalactic Modeling

We present new Chandra constraints on the X-ray luminosity functions(XLFs)of X-ray binary(XRB)populations, as well as their scaling relations, for a sample of 38 nearby galaxies(D = 3.4–29 Mpc). Our galaxy sample is drawn primarily from the Spitzer Infrared Nearby Galaxies Survey(SINGS)and contains a wealth of Chandra(5.8 Ms total)and multiwavelength data, allowing for star formation rates(SFRs)and stellar masses(M⁎)to be measured on subgalactic scales. We divided the 2478 X-ray-detected sources into 21 subsamples in bins of specific SFR(sSFR ≡ SFR/M⁎)and constructed XLFs. To model the XLF dependence on sSFR, we fit a global XLF model, containing contributions from high-mass XRBs(HMXBs), low-mass XRBs(LMXBs), and background sources from the cosmic X-ray background that respectively scale with SFR, M⁎, and sky area. We find an HMXB XLF that is more complex in shape than previously reported and an LMXB XLF that likely varies with sSFR, potentially due to an age dependence. When applying our global model to XLF data for each individual galaxy, we discover a few galaxy XLFs that significantly deviate from our model beyond statistical scatter. Most notably, relatively low-metallicity galaxies have an excess of HMXBs above≈10^(38)erg/s, and elliptical galaxies that have relatively rich populations of globular clusters(GCs)show excesses of LMXBs compared to the global model. Additional modeling of how the XRB XLF depends on stellar age, metallicity, and GC specific frequency is required to sufficiently characterize the XLFs of galaxies.

Bret D. Lehmer↗

An Io thermal model with intermittent volcanism

Observations have indicated that heat flow out of Io at present may be several times greater than the heat input from enhanced tidal heating; this may indicate that the observed heat flow is intermittent, rather than continuous. A two-dimensional time-dependent thermal model of Io was constructed to examine the relationship between enhanced tidal heating, heat flow within the body, and surface volcanism. From the models one can conclude that (1) a simple homogeneous body cannot maintain enhanced tidal heating in a thin crust, but such heating is possible if the crust contains an insulating layer, as of sulfur; (2) this sulfur layer will be subject to melting by heat from the interior, resulting in hotspots which can expel heat much more rapidly than tidal heating inputs it; and (3) the location of these hotspots will vary in time and space; they can appear anywhere on the surface, even if tidal heating is concentrated at the poles, and they seem to occur roughly 10% of the time.

Consolmagno, G. J.↗

Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection

Understanding the dynamics of acute HIV infection can offer valuable insights into the early stages of viral behavior, potentially helping uncover various aspects of HIV pathogenesis. The standard viral dynamics model explains HIV viral dynamics during acute infection reasonably well. However, the model makes simplifying assumptions, neglecting some aspects of HIV infection. For instance, in the standard model, target cells are infected by a single HIV virion. Yet, cellular multiplicity of infection (MOI) may have considerable effects in pathogenesis and viral evolution. Further, when using the standard model, we take constant infected cell death rates, simplifying the dynamic immune responses. Here, we use four models—1) the standard viral dynamics model, 2) an alternate model incorporating cellular MOI, 3) a model assuming density-dependent death rate of infected cells and 4) a model combining (2) and (3)—to investigate acute infection dynamics in 43 people living with HIV very early after HIV exposure. We find that all models qualitatively describe the data, but none of the tested models is by itself the best to capture different kinds of heterogeneity. Instead, different models describe differing features of the dynamics more accurately. For example, while the standard viral dynamics model may be the most parsimonious across study participants by the corrected Akaike Information Criterion (AICc), we find that viral peaks are better explained by a model allowing for cellular MOI, using a linear regression analysis as analyzed by R 2 . These results suggest that heterogeneity in within-host viral dynamics cannot be captured by a single model. Depending on the specific aspect of interest, a corresponding model should be employed.

60 APPLIED LIFE SCIENCES↗

Modeling plasticity-mediated void growth at the single crystal scale: A physics-informed machine learning approach

Modeling the evolution of voids during plastic flow as well as their effects on plastic dissipation is critical for both component manufacturing and lifetime estimation purposes. To this end, we propose a rate-dependent constitutive model to homogenize the effects of semi-randomly distributed voids on single crystal plasticity whilst capturing void interaction and plastic anisotropy. Here, this present work focuses on the case of face centered cubic crystals to introduce an anisotropic gauge function applicable within the crystal plasticity formalism. The approach combines analytical methods to describe the micromechanics of the system in combination with symbolic regression to capture analytically intractable mechanisms from data. The hybrid framework uses a physics-informed genetic programming-based symbolic regression algorithm to solve a multiform optimization problem simultaneously producing a new gauge function and a new strain rate equation. This is also a multi-objective optimization problem with many competing objectives. A new search and selection step is introduced to the genetic algorithm that promotes convergence toward a global solution that better satisfies all the objectives. Overall, the symbolic equations produced leverage data-driven methods to achieve greater accuracy than comparable alternatives on an analytically intractable problem while maintaining model transparency.

36 MATERIALS SCIENCE↗