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At least 991 records · Page 55

Evaluating the contribution of plant metabolic pathways in the light to the ATP:NADPH demand using a meta-analysis of isotopically non-stationary metabolic flux analyses

Abstract Balancing the ATP: NADPH demand from plant metabolism with supply from photosynthesis is essential for preventing photodamage and operating efficiently, so understanding its drivers is important for integrating metabolism with the light reactions of photosynthesis and for bioengineering efforts that may radically change this demand. It is often assumed that the C3 cycle and photorespiration consume the largest amount of ATP and reductant in illuminated leaves and as a result mostly determine the ATP: NADPH demand. However, the quantitative extent to which other energy consuming metabolic processes contribute in large ways to overall ATP: NADPH demand remains unknown. Here, we used the metabolic flux networks of numerous recently published isotopically non-stationary metabolic flux analyses (INST-MFA) to evaluate flux through the C3 cycle, photorespiration, the oxidative pentose phosphate pathway, the tricarboxylic acid cycle, and starch/sucrose synthesis and characterize broad trends in the demand of energy across different pathways and compartments as well as in the overall ATP:NADPH demand. These data sets include a variety of species including Arabidopsis thaliana , Nicotiana tabacum , and Camelina sativa as well as varying environmental factors including high/low light, day length, and photorespiratory levels. Examining these datasets in aggregate reveals that ultimately the bulk of the energy flux occurred in the C3 cycle and photorespiration, however, the energy demand from these pathways did not determine the ATP: NADPH demand alone. Instead, a notable contribution was revealed from starch and sucrose synthesis which might counterbalance photorespiratory demand and result in fewer adjustments in mechanisms which balance the ATP deficit.

59 BASIC BIOLOGICAL SCIENCES↗

Meso-scale modeling of irradiated concrete in test reactor

In this paper, we detail a numerical model accounting for the effects of neutron irradiation on concrete at the mesoscale. Irradiation experiments in test reactor (Elleuch et al.,1972), i.e., in accelerated conditions, are simulated. Concrete is considered as a two-phase material made of elastic inclusions (aggregate) subjected to thermal and irradiation-induced swelling and embedded in a cementitious matrix subjected to shrinkage and thermal expansion. The role of the hardened cement paste in the post-peak regime (brittle-ductile transition with decreasing loading rate), and creep effects are investigated. Radiation-induced volumetric expansion (RIVE) of the aggregate cause the development and propagation of damage around the aggregate which further develops in bridging cracks across the hardened cement paste between the individual aggregate particles. The development of damage is aggravated when shrinkage occurs simultaneously with RIVE during the irradiation experiment. The post-irradiation expansion derived from the simulation is well correlated with the experimental data and, the obtained damage levels are fully consistent with previous estimations based on a micromechanical interpretation of the experimental post-irradiation elastic properties (Le Pape et al.,2015). In conclusion, the proposed modeling opens new perspectives for the interpretation of test reactor experiments in regards to the actual operation of light water reactors.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Characterization of Aβ Monomers through the Convergence of Ensemble Properties among Simulations with Multiple Force Fields

We found that amyloid β (Aβ) monomers represent a base state in the pathways of aggregation that result in the fibrils and oligomers implicated in the pathogenesis of Alzheimer’s disease (AD). The structural properties of these intrinsically disordered peptides remain unclear despite extensive experimental and computational investigations. Further, there are mutations within Aβ that change the way the peptide aggregates and are known to cause familial AD (FAD). Here, we analyze the ensembles of different isoforms (Aβ42 and Aβ40) and mutants (E22Δ, D23N, E22K, E22G, and A2T in Aβ40) of Aβ generated with all-atom replica exchange molecular dynamics (REMD) simulations on the μs/replica time scale. These were run using three different force field/water model combinations: OPLS-AA/L and TIP3P (“OPLS”), AMBER99sb-ILDN and TIP4P-Ew (“ILDN”), as well as CHARMM22* and TIP3SP (“CHARMM”). Despite fundamental changes in simulation parameters, we find that the resulting ensembles demonstrate a strong convergence in structural properties. In particular, antiparallel contacts between L17–A21 and A30–L34 are prevalent in ensembles of Aβ40, directly forming β sheets in the OPLS and ILDN combinations. A21–A30 commonly forms an interceding region that rarely interacts with the rest of the peptide. Further, Aβ42 contributes new β hairpin motifs involving V40–I41 in both OPLS and ILDN. However, the structural flexibility of the central region and the electrostatic interactions that characterize it are notably different between the different conditions. Further, for OPLS, each of the FAD mutations disrupts central bend character and increases the polymorphism of antiparallel contacts across the central region. However, the studied mutations in the ILDN set primarily encourage more global contacts involving the N-terminus and the central region, and promote the formation of new β topologies that may seed different aggregates involved in disease phenotypes. Furthermore, these differences aside, the large degree of agreement between simulation sets across multiple force fields provides a generalizable characterization of Aβ that is also consistent with experimental data and models.

59 BASIC BIOLOGICAL SCIENCES↗

Characterization of the structural forces governing the reversibility of the thermal unfolding of the human acidic fibroblast growth factor

Human acidic fibroblast growth factor (hFGF1) is an all beta-sheet protein that is involved in the regulation of key cellular processes including cell proliferation and wound healing. hFGF1 is known to aggregate when subjected to thermal unfolding. In this study, we investigate the equilibrium unfolding of hFGF1 using a wide array of biophysical and biochemical techniques. Systematic analyses of the thermal and chemical denaturation data on hFGF1 variants (Q54P, K126N, R136E, K126N/R136E, Q54P/K126N, Q54P/R136E, and Q54P/K126N/R136E) indicate that nullification of charges in the heparin-binding pocket can significantly increase the stability of wtFGF1. Triple variant (Q54P/K126N/R136E) was found to be the most stable of all the hFGF1 variants studied. With the exception of triple variant, thermal unfolding of wtFGF1 and the other variants is irreversible. Thermally unfolded triple variant refolds completely to its biologically native conformation. Microsecond-level molecular dynamic simulations reveal that a network of hydrogen bonds and salt bridges linked to Q54P, K126N, and R136E mutations, are responsible for the high stability and reversibility of thermal unfolding of the triple variant. In our opinion, the findings of the study provide valuable clues for the rational design of a stable hFGF1 variant that exhibits potent wound healing properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Zero-deadtime processing in beta spectroscopy for measurement of the non-zero neutrino mass

The Project 8 collaboration seeks to measure, or more tightly bound, the mass of the electron antineutrino by applying a novel spectroscopy technique to precisely measure the tritium beta-decay spectrum. The current system produces a single analog signal, which is digitized and processed in several stages before being saved to local disk storage. Online processing includes two stages, an FPGA connected to the analog to digital converter reduces the data down to the region of interest before shipping over the local network for further processing and storage. A normal CPU-based processing stage applies triggering logic to only save data at times when a signal is present, further reducing the total volume of data which needs to be written to disk or transferred for long-term storage. The next stage of the project will need to process many input channels and will integrate a necessary aggregation and combination step prior to applying the event search and triggering logic. We present the online processing system which has successfully been deployed for the current, singlechannel, phase. We also present the status and design for a many-channel platform.

Project 8 Collaboration↗

Impact of Floating PV (FPV) System on Water Evaporation: Case Study of an Open Loop Reservoir in North Carolina

Fresh water scarcity is becoming one of the important concerns worldwide. This situation of water scarcity is further exacerbated by the increase in water evaporation due to climate change. This manuscript will address this concern by considering the impact of floating photovoltaics (FPVs) systems on water evaporation. The installation of PV modules on the water bodies can help reduce the water evaporation rate from reservoirs by reducing the evaporating area of the water surface. This work evaluates the effect of FPV on water evaporation rates in the TuckerTown reservoir located in North Carolina state of United States. Meteorological data, such as mean temperature and dew-point, are used to calculate the rate of the water evaporation by Linacre method. The simulation results for the TuckerTown case study showed that the aggregated avoided evaporated volume for one year is 9 million gallons.

14 SOLAR ENERGY↗

The strain-dependent spatial evolution of garnet in a high- P ductile shear zone from the Western Gneiss Region (Norway): a synchrotron X-ray microtomography study

Reaction and deformation microfabrics provide key information to understand the thermodynamic and kinetic controls of tectono-metamorphic processes, however they are usually analysed in two dimensions, omitting important information regarding the third spatial dimension. We applied synchrotron-based X-ray microtomography to document the evolution of a pristine olivine gabbro into a deformed omphacite-garnet eclogite in four dimensions, where the 4th dimension is represented by the degree of strain. In the investigated samples, which cover a strain gradient into a shear zone from the Western Gneiss Region (Norway), we focused on the spatial transformation of garnet coronas into elongated clusters of garnets with increasing strain. Our microtomographic data allowed quantification of garnet volume, shape and spatial arrangement evolution with increasing strain. We combined microtomographic observations with light microscope- and backscatter electron images as well as electron microprobe- (EMPA) and electron backscatter diffraction (EBSD) analysis to correlate mineral composition and orientation data with the X-ray absorption signal of the same mineral grains. With increasing deformation, the garnet volume almost triples. In the low strain domain, garnets form a well interconnected large garnet aggregate that develops throughout the entire Page 1 of 52 sample. We also observed that garnet coronas in the gabbros never completely encapsulate olivine grains. In the most highly deformed eclogites, the oblate shapes of garnet clusters reflect a deformational origin of the microfabrics. We interpret the aligned garnet aggregates to direct synkinematic fluid flow and consequently influence the transport of dissolved chemical components. EBSD analyses reveal that garnet show a near-random crystal preferred orientation that testifies no evidence for crystal plasticity. There is, however evidence for minor fracturing, neo-nucleation and overgrowth. Microprobe chemical analysis revealed that garnet compositions progressively equilibrate to eclogite facies, becoming more almandine-rich. We interpret these observations as pointing to a mechanical disintegration of the garnet coronas during strain localisation, and their rearrangement into individual garnet clusters through a combination of garnet coalescence and overgrowth while the rock was deforming.

garnet↗

CEC Quest: Long Duration Energy Storage Impact Analysis Tool

SAND2025-14389O CEC Quest is a Python tool with a user interface designed to analyze the greenhouse gas impacts of long-duration energy storage projects in California. The tool automates data collection from public sources and uses an Application Programming Interface (API) to enable users to download photovoltaic resource availability, marginal operating emissions rate, and utility rate data. It guides users in inputting parameters for a battery energy storage model and uploading site electrical load data, while also prompting for relevant analysis parameters like timestep and grid limits. CEC Quest performs monthly optimization of one year of data to assess impacts on the site’s electrical bill and the grid’s greenhouse gas emissions. Finally, it conducts a lifecycle analysis to evaluate changes over a defined quantification period, with results aggregated through automated report generation. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Rosewater, David [Sandia National Lab. (SNL-CA), L↗

Prospective Seal Name Catalog for U.S. Sedimentary Basins V1.0

The Prospective Seal Name Catalog for U.S. Sedimentary Basins V1.0 is an aggregation of prospective seal units for prospective storage resources within the USA for geologic carbon storage in both onshore and offshore basins. The catalog is intended to guide users to available literature and data resources. Prospective seal names are displayed with respect to the associated prospective storage resource target, for which the specified prospective seal may act as a confining layer for CO2 storage. A prospective seal unit’s lithology, position with respect to the reservoir (Primary, Secondary, Intraformational, etc.), and age (Geologic Period) are included when stated in the original literature or data resource. The information source for each record in the catalog includes the published citation, year of publication, resource type (Journal Article, Event Proceedings, etc.) and additional record notes.

Basin↗

Harnessing Condorcet Methods to Improve Decision-making Based on Ranked Data

Decision-makers must often choose between multiple alternatives based on their relative merits across a variety of criteria. These multiple-criteria decision-making (MCDM) problems must be approached in an objective, measurable, and transparent fashion to obtain well-supported outcomes. The challenge of using sets of ranked data to identify the optimal choice is not unlike the challenge of using ranked ballots to identify the winner of an election in a preference voting system. As such, the methods of rank aggregation used in elections can be applied to help resolve MCDM problems. Previous research into the design of elections and ballots has yielded many algorithms with well-understood properties. A subset of these, called Condorcet methods, reliably identify the “Condorcet winner,” if it exists, giving the result that would defeat any other in a pairwise comparison. That, in addition to several other desirable qualities, makes Condorcet methods like the Schulze method, Ranked Pairs, and Copeland’s method, effective and scalable means for tackling MCDM problems. These rank aggregation methods have been implemented in JavaScript functions for incorporation into a web-based MCDM decision tool. These algorithms can be applied in a wide variety of contexts (for example, determining the “best” environmental remediation method or selecting a subcontractor) to facilitate effective decision-making. The performance of the JavaScript Condorcet prototype tool was compared across the implemented algorithms and with both a non-Condorcet rank aggregation method as well as an implementation of the Simple Multi-Attribute Rating Technique (SMART) algorithm.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

ENDF/B-VIII.0 Testing With AMPX and SCALE

As the new ENDF/B-VIII.0 data has continued development from its initial beta release into the final release version, it has subsequently undergone processing and testing at Oak Ridge National Laboratory with AMPX and SCALE. Each of the beta releases has been processed with AMPX to create both multigroup (MG) and continuous-energy (CE) libraries. The MG libraries were all processed using the SCALE 252-group structure. These libraries were then used with the VALID suite for benchmarking the new data library’s performance against the currently distributed ENDF/B-VII.1 (VII.1)-based SCALE libraries. Here, we compare the MG and CE VALID results for the two current ENDF releases, versions VII.1 and the most recent beta release of ENDF/B-VIII.0 as of this writing (VIII.0.β4). Generally, both the MG and CE VALID aggregate results for VIII.0.β4 compare reasonably well with their VII.1-derived counterparts. As can be expected of any new ENDF release, some of the individual cases have substantially different computed neutron multiplicity (k eff ) values between the two releases, although typically the differences are less than 100 percent-milli (pcm). However, changes to the plutonium cross sections have induced much larger changes in the ratio of the computed k eff to the experimental value (C/E) for thermal spectrum plutonium solution critical systems. This paper details the comparative performance of the VII.1 and VIII.0.β4 data for the broad range of test cases covered by the VALID suite. A companion paper at this conference provides details of the baseline validation of SCALE 6.2, including the first release of the VII.1 data.

97 MATHEMATICS AND COMPUTING↗

ENDF/B-VIII.0 testing with AMPX and SCALE

As the new ENDF/B-VIII.0 data has continued development from its initial beta release into the final release version, it has subsequently undergone processing and testing at Oak Ridge National Laboratory with AMPX and SCALE. Each of the beta releases has been processed with AMPX to create both multigroup (MG) and continuous-energy (CE) libraries. The MG libraries were all processed using the SCALE 252-group structure. These libraries were then used with the VALID suite for benchmarking the new data library's performance against the currently distributed ENDF/B-VII.1 (VII.1)-based SCALE libraries. Here, we compare the MG and CE VALID results for the two current ENDF releases, versions VII.1 and the most recent beta release of ENDF/B-VIII.0 as of this writing (VIII.0.β4). Generally, both the MG and CE VALID aggregate results for VIII.0.β4 compare reasonably well with their VII.1-derived counterparts. As can be expected of any new ENDF release, some of the individual cases have substantially different computed neutron multiplicity (k{sub eff}) values between the two releases, although typically the differences are less than 100 percent-milli (pcm). However, changes to the plutonium cross sections have induced much larger changes in the ratio of the computed k{sub eff} to the experimental value (C/E) for thermal spectrum plutonium solution critical systems. This paper details the comparative performance of the VII.1 and VIII.0.β4 data for the broad range of test cases covered by the VALID suite. A companion paper at this conference provides details of the baseline validation of SCALE 6.2, including the first release of the VII.1 data. (authors)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

TU-C-17A-01: A Data-Based Development for Pratical Pareto Optimality Assessment and Identification

Purpose: To develop an efficient Pareto optimality assessment scheme to support plan comparison and practical determination of best-achievable practical treatment plan goals. Methods: Pareto efficiency reflects the tradeoffs among competing target coverage and normal tissue sparing in multi-criterion optimization (MCO) based treatment planning. Assessing and understanding Pareto optimality provides insightful guidance for future planning. However, current MCO-driven Pareto estimation makes relaxed assumptions about the Pareto structure and insufficiently account for practical limitations in beam complexity, leading to performance upper bounds that may be unachievable. This work proposed an alternative data-driven approach that implicitly incorporates the practical limitations, and identifies the Pareto frontier subset by eliminating dominated plans incrementally using the Edgeworth Pareto hull (EPH). The exactness of this elimination process also permits the development of a hierarchical procedure for speedup when the plan cohort size is large, by partitioning the cohort and performing elimination in each subset before a final aggregated elimination. The developed algorithm was first tested on 2D and 3D where accuracy can be reliably assessed. As a specific application, the algorithm was applied to compare systematic plan quality for lower head-and-neck, amongst 4 competing treatment modalities. Results: The algorithm agrees exactly with brute-force pairwise comparison and visual inspection in low dimensions. The hierarchical algorithm shows sqrt(k) folds speedup with k being the number of data points in the plan cohort, demonstrating good efficiency enhancement for heavy testing tasks. Application to plan performance comparison showed superiority of tomotherapy plans for the lower head-and-neck, and revealed a potential nonconvex Pareto frontier structure. Conclusion: An accurate and efficient scheme to identify Pareto frontier from a plan cohort has been developed. This implementation would guide generating good yet practically achievable plan quality goals for further planning. The observation of a systematic performance bias and a nonconvex Pareto frontier warrants further investigation.

60 APPLIED LIFE SCIENCES↗

Field Trial of a Low-Cost, Distributed Plug Load Monitoring System

Researchers have struggled to inventory and characterize the energy use profiles of the ever-growing category of so-called miscellaneous electric loads (MELs) because plug-load monitoring is cost-prohibitive to the researcher and intrusive to the homeowner. However, these data represent a crucial missing link to understanding how homes use energy. Detailed energy use profiles would enable the nascent automated home energy management (AHEM) industry to develop effective control algorithms that target consumer electronics and other plug loads. If utility and other efficiency programs are to incent AHEM devices, they need large-scale datasets that provide statistically meaningful justification of their investments by quantifying the aggregate energy savings achievable. To address this need, NREL researchers investigated a variety of plug-load measuring devices available commercially and tested them in the laboratory to identify the most promising candidates for field applications. This report centers around the lessons learned from a field validation of one proof-of-concept system, called Smartenit (formerly SimpleHomeNet). The system was evaluated based on the rate of successful data queries, reliability over a period of days to weeks, and accuracy. This system offers good overall performance when deployed with up to 10 end nodes in a residential environment, although deployment with more nodes and in a commercial environment is much less robust. NREL concludes that the current system is useful in selected field research projects, with the recommendation that system behavior is observed over time.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

New compositional data on ancient mortars and plasters from Pompeii (Campania – Southern Italy): Archaeometric results and considerations about their time evolution

Highlights: • Mortar samples from Pompeii, with different constructive functions, were studied. • Characterization of the materials can be used for preparing compatible mortars. • Analogies and differences were highlighted to identify the constructive phases. • Preliminary statistic models were proposed to discriminate materials and constructive phases. Twenty-six samples of mortar used for various construction applications (joint mortars, floor mortars, filling mortars and plasters) were collected from different areas of the archaeological site of Pompeii (Campania - Sothern Italy). The mortar samples belong to various historical periods covering approximately 2000 years, from the 2nd century BC to the post excavation period (18–19th century). The samples were characterized employing Optical Microscopy (OM), X-ray Powder Diffraction (XRPD), X-ray Fluorescence (XRF), Electron Probe Micro Analysis (EPMA) and Raman Spectroscopy. Moreover, image analysis was carried out using JMicroVision software in order to determine the percentages of binder, macropores and aggregate, in terms of crushed ceramic fragments (cocciopesto), rock fragments and monocrystals. The application of these techniques allowed obtaining a complete chemical and minero-petrographic characterization of the samples, which may prove useful for preparing compatible repair mortars for future restoration works. The archaeometric study provided new data on the production technology of the mortars and the analogies and differences observed among the samples, enabled us to distinguish different constructive phases, thus confirming or rebutting the archaeological hypothesis on the dating of some samples. By combining compositional variables through the discriminant analysis, it was also possible to analyse the time evolution of the materials and to construct preliminary multivariate statistical models, helpful to identify the various typologies of mortars used in the different historical periods.

36 MATERIALS SCIENCE↗

ABT737 enhances cholangiocarcinoma sensitivity to cisplatin through regulation of mitochondrial dynamics

Cholangiocarcinoma responses weakly to cisplatin. Mitochondrial dynamics participate in the response to various stresses, and mainly involve mitophagy and mitochondrial fusion and fission. Bcl-2 family proteins play critical roles in orchestrating mitochondrial dynamics, and are involved in the resistance to cisplatin. Here we reported that ABT737, combined with cisplatin, can promote cholangiocarcinoma cells to undergo apoptosis. We found that the combined treatment decreased the Mcl-1 pro-survival form and increased Bak. Cells undergoing cisplatin treatment showed hyperfused mitochondria, whereas fragmentation was dominant in the mitochondria of cells exposed to the combined treatment, with higher Fis1 levels, decreased Mfn2 and OPA1 levels, increased ratio of Drp1 60 kD to 80 kD form, and more Drp1 located on mitochondria. More p62 aggregates were observed in cells with fragmented mitochondria, and they gradually translocated to mitochondria. Mitophagy was induced by the combined treatment. Knockdown p62 decreased the Drp1 ratio, increased Tom20, and increased cell viability. Our data indicated that mitochondrial dynamics play an important role in the response of cholangiocarcinoma to cisplatin. ABT737 might enhance cholangiocarcinoma sensitivity to cisplatin through regulation of mitochondrial dynamics and the balance within Bcl-2 family proteins. Furthermore, p62 seems to be critical in the regulation of mitochondrial dynamics. - Highlights: • Cholangiocarcinoma may adapt to cisplatin through mitochondrial fusion. • ABT737 sensitizes cholangiocarcinoma to cisplatin by promoting fission and mitophagy. • p62 might participate in the regulation of mitochondrial fission and mitophagy.

60 APPLIED LIFE SCIENCES↗

Einstein@Home discovers a radio-quiet gamma-ray millisecond pulsar

Millisecond pulsars (MSPs) are old neutron stars that spin hundreds of times per second and appear to pulsate as their emission beams cross our line of sight. To date, radio pulsations have been detected from all rotation-powered MSPs. Here, in an attempt to discover radio-quiet gamma-ray MSPs, we used the aggregated power from the computers of tens of thousands of volunteers participating in the Einstein@Home distributed computing project to search for pulsations from unidentified gamma-ray sources in Fermi Large Area Telescope data. This survey discovered two isolated MSPs, one of which is the only known rotation-powered MSP to remain undetected in radio observations. These gamma-ray MSPs were discovered in completely blind searches without prior constraints from other observations, raising hopes for detecting MSPs from a predicted Galactic bulge population.

79 ASTRONOMY AND ASTROPHYSICS↗

Radiation-induced Alteration of Meta-chert

Concrete aggregate identified as “meta-chert” was irradiated with gamma-rays and neutrons. To identify the volume expansion of the aggregate under neutron irradiation, herein the following analyses were performed for pristine and irradiated α-quartz and meta-chert: X-ray diffraction (XRD)/Rietveld analysis, dimension change, water pycnometry, He-pycnometry, light optical microscopy (LOM), and scanning electron microscopy (SEM). From the difference of volume expansion observed from dimension change and water / helium pycnometry, the crack opening inside the aggregate subjected to irradiation was elucidated, and this was confirmed by LOM and SEM analysis. The crack contribution to the expansion of the aggregate was significant for neutron fluence > 6.99 × 1019 n/cm 2 , for E ≥ 0.01 MeV. Based on the XRD analysis, changes in lattice parameters were identified and the cell volume expansion was compared with the data by helium pycnometry. Based on the density change calculation and phase calculation data, the density of X-ray amorphous phase was consistent with that of expanded crystal α-quartz.

36 MATERIALS SCIENCE↗