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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 991 records · Page 55
All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Complete genome sequence of Pelosinus sp. strain UFO1 assembled using single-molecule real-time DNA sequencing technology

Pelosinus fermentans strain R7 was isolated from Russian kaolin clays as the type strain and it can reduce Fe(III) during fermentative growth (1). Draft genome sequences for P. fermentans R7 and four strains from Hanford, Washington, USA, have been published (2–4). The P. fermentans 16S rRNA sequence dominated the lactate-based enrichment cultures from three geochemically contrasting soils from the Melton Branch Watershed, Oak Ridge, Tennessee, USA (5) and also at another stimulated, uraniumcontaminated field site near Oak Ridge (6). For the current work, strain UFO1 was isolated from pristine sediments at a background field site in Oak Ridge and characterized as facilitating U(VI) reduction and precipitation with phosphate (7).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain

We present the complete genome assembly of Escherichia coli ATCC 25922 as submitted to NCBI under accession no. CP009072. This strain was originally isolated from a clinical sample in Seattle, Washington (1946), and is often used in quality control testing. The assembled genome is 5.20 Mb (50.4% GC content) and includes two plasmids.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum

The genome of Pelosinus fermentans JBW45, isolated from a chromium-contaminated site in Hanford, Washington, USA, has been completed with PacBio sequencing. Finally, nine copies of the rRNA gene operon and multiple transposase genes with identical sequences resulted in breaks in the original draft genome and may suggest genomic instability of JBW45.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition

Intraspecific variation in plant nutrient and defensive traits can regulate ecosystem-level processes, such as decomposition and transformation of plant carbon and nutrients. Understanding the regulatory mechanisms of ecosystem functions at local scales may facilitate predictions of the resistance and resilience of these functions to change. We evaluated how riverine bacterial community assembly and predicted gene content corresponded to decomposition rates of green leaf inputs from red alder trees into rivers of Washington State, USA. Previously, we documented accelerated decomposition rates for leaves originating from trees growing adjacent to the site of decomposition versus more distant locales, suggesting that microbes have a “home-field advantage” in decomposing local leaves. Here, we identified repeatable stages of bacterial succession, each defined by dominant taxa with predicted gene content associated with metabolic pathways relevant to the leaf characteristics and course of decomposition. “Home” leaves contained bacterial communities with distinct functional capacities to degrade aromatic compounds. Given known spatial variation of alder aromatics, this finding helps explain locally accelerated decomposition. Bacterial decomposer communities adjust to intraspecific variation in leaves at spatial scales of less than a kilometer, providing a mechanism for rapid response to changes in resources such as range shifts among plant genotypes. Such rapid responses among bacterial communities in turn may maintain high rates of carbon and nutrient cycling through aquatic ecosystems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes

Soil viruses are abundant, but the influence of the environment and climate on soil viruses remains poorly understood. Here, we addressed this gap by comparing the diversity, abundance, lifestyle, and metabolic potential of DNA viruses in three grassland soils with historical differences in average annual precipitation, low in eastern Washington (WA), high in Iowa (IA), and intermediate in Kansas (KS). Bioinformatics analyses were applied to identify a total of 2,631 viral contigs, including 14 complete viral genomes from three deep metagenomes (1 terabase [Tb] each) that were sequenced from bulk soil DNA. An additional three replicate metagenomes (~0.5 Tb each) were obtained from each location for statistical comparisons. Identified viruses were primarily bacteriophages targeting dominant bacterial taxa. Both viral and host diversity were higher in soil with lower precipitation. Viral abundance was also significantly higher in the arid WA location than in IA and KS. More lysogenic markers and fewer clustered regularly interspaced short palindromic repeats (CRISPR) spacer hits were found in WA, reflecting more lysogeny in historically drier soil. More putative auxiliary metabolic genes (AMGs) were also detected in WA than in the historically wetter locations. The AMGs occurring in 18 pathways could potentially contribute to carbon metabolism and energy acquisition in their hosts. Structural equation modeling (SEM) suggested that historical precipitation influenced viral life cycle and selection of AMGs. The observed and predicted relationships between soil viruses and various biotic and abiotic variables have value for predicting viral responses to environmental change.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere

Luteolibacter sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa, from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Measurement of the helicity asymmetry $${\mathbb {E}}$$ for the $$\vec {\gamma }\vec {p} \rightarrow p \pi ^0$$ reaction in the resonance region: The CLAS Collaboration

Abstract The double-spin-polarization observable $${\mathbb {E}}$$ E for $$\vec {\gamma }\vec {p}\rightarrow p\pi ^0$$ γ → p → → p π 0 has been measured with the CEBAF Large Acceptance Spectrometer (CLAS) at photon beam energies $$E_\gamma $$ E γ from 0.367 to $$2.173~\textrm{GeV}$$ 2.173 GeV (corresponding to center-of-mass energies from 1.240 to $$2.200~\textrm{GeV}$$ 2.200 GeV ) for pion center-of-mass angles, $$\cos \theta _{\pi ^0}^{c.m.}$$ cos θ π 0 c . m . , between $$-$$ - 0.86 and 0.82. These new CLAS measurements cover a broader energy range and have smaller uncertainties compared to previous CBELSA data and provide an important independent check on systematics. These measurements are compared to predictions as well as new global fits from The George Washington University, Mainz, and Bonn-Gatchina groups. Their inclusion in multipole analyses will allow us to refine our understanding of the single-pion production contribution to the Gerasimov-Drell-Hearn sum rule and improve the determination of resonance properties, which will be presented in a future publication.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Inclusion of $K\Lambda $ electroproduction data in a coupled channel analysis

Exclusive electroproduction reactions provide an access to the structure of excited baryons. To extract electroproduction multipoles encoding this information, the Julich-Bonn-Washington (JBW) analysis framework is extended to the analysis of differential cross sections in KΛ electroproduction. Here this update enlarges the scope of previous coupled-channel analyses of pions and eta mesons, with photoproduction reactions as boundary condition in all analyzed electroproduction reactions. Polarization observables are predicted and compared to recent CLAS data. The comparison shows the relevance of these data to pin down baryon properties.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2019

Mobility Pattern Analysis for Power Restoration Activities Using Geo-Tagged Tweets

In this study, we analyzed mobility patterns of at-risk populations affected by an extreme event using geotagged tweets to geo-target power restoration efforts. Unlike other studies that have used tweets to facilitate emergency management activities, we used 1.5 million geotagged tweets generated during Hurricane Sandy (2012) to determine the mobility patterns and geospatial distribution of impacted populations who experienced power outage before, during and after the hurricane. We implemented a three-step analytical framework to: (i) analyze tweet contents with visual methods, including dendrograms, word clouds to identify common keywords pertaining to power outage; (ii) identify target users whose tweets contained information about power outages; and (iii) create a user-tweet locations matrix and an origin-destination matrix to examine clusters of target users and their mobility patterns. Preliminary results indicate that potential clusters were present in and around New York city, Philadelphia, Washington D.C. and Baltimore, which were used as potential evacuation destination cities after hurricane Sandy. The travel pattern and destination information can be used to (i) mobilize restoration efforts by utility companies and (ii) address resource allocation needs both in impacted and destination cities. Future work will focus on analyzing potential destinations for different origins and travel-time to identify evacuation routing patterns.

Kar, Bandana↗
DOE OSTI2020

Collective Risk Ranking of Highway Segments on the Basis of Severity-Weighted Crash Rates

This study is intended to focus on the major factors affecting traffic crash rates and severity levels, in addition to identifying crash-prone locations (i.e., black spots) based on the two indicators. The available crash data for different road segments used for the analysis were obtained from the Washington state database provided by the Highway Safety Information System (HSIS) for the years 2006 to 2011. A Random Forest (RF) classifier was used to predict the outcome level of crash severity, while crash rates were predicted by applying RF regressor. Certain features were selected for each model besides the abstraction of new features to check if there are unobserved correlations affecting the independent variables, such as accounting for the number and weight of crashes within 1 km2 area by implementing the Getis-Ord Gi∗ index. Moreover, to calculate the collective risk (CR) score, crash rates were adjusted to incorporate crash severity weights (cost per severity type) and regression-to-the-mean (RTM) bias via Empirical Bayes (EB) method. Finally, segments were ranked according to their CR score.

Li, Dawei↗
DOE OSTI2018

bifacialVF - Bifacial PV View Factor model [SWR 17-58]

bifacialvf is a self-contained view factor (or configuration factor) model which replicates a 5-row PV system of infinite extent perpendicular to the module rows. Single-axis tracking is supported, and hourly output files based on TMY inputs are saved. Spatial nonuniformity is reported, with multiple rear-facing irradiances collected on the back of each module row. Bilinear interpolation code add-on to bifacialvf (description below) to pre-generate IV arrays and bifacial coefficients, and to examine the energy production with back side irradiance mismatch for either a portrait or landscape module. Included are IV curves and bifacial info for a Yingli (standard) module. Based on the publication: "A Practical Irradiance Model for Bifacial PV Modules" B. Marion, S. MacAlpine, C. Deline, A. Asgharzadeh, F. Toor, D. Riley, J. Stein, C. Hansen 2017 IEEE Photovoltaic Specialists Conference, Washington DC, 2017 URL: https://www.nrel.gov/docs/fy17osti/67847.pdf

Deline, Chris↗
DOE OSTI2022

bifacialVF - Bifacial PV View Factor model 2022 [SWR 17-58]

bifacialvf is a self-contained view factor (or configuration factor) model which replicates a 5-row PV system of infinite extent perpendicular to the module rows. Single-axis tracking is supported, and hourly output files based on TMY inputs are saved. Spatial nonuniformity is reported, with multiple rear-facing irradiances collected on the back of each module row. Bilinear interpolation code add-on to bifacialvf (description below) to pre-generate IV arrays and bifacial coefficients, and to examine the energy production with back side irradiance mismatch for either a portrait or landscape module. Included are IV curves and bifacial info for a Yingli (standard) module. Based on the publication: "A Practical Irradiance Model for Bifacial PV Modules" B. Marion, S. MacAlpine, C. Deline, A. Asgharzadeh, F. Toor, D. Riley, J. Stein, C. Hansen 2017 IEEE Photovoltaic Specialists Conference, Washington DC, 2017 URL: https://www.nrel.gov/docs/fy17osti/67847.pdf

Deline, Chris↗
DOE OSTI2024

Established Regulatory Limits for Surface Water and Groundwater

The regulatory limits for surface water and groundwater contained in this database comprise chemical-specific preliminary remediation goals (PRGs) based on potential Applicable or Relevant and Appropriate Requirements (ARARs). These values should be used in conjunction with PRGs based on risk assessment to ensure that the PRGs for a site meet the residual risk requirements for protection of human health and the environment in the National Oil and Hazardous Substance Pollution Contingency Plan (NCP). In some cases, the values presented in this database may be To-Be-Considered (TBC) Guidance because these values are superseded by site-specific state requirements. ARARs are available for the Federal government, California, Georgia, Illinois, Kentucky, New Jersey, New Mexico, Nevada, New York, Ohio, South Carolina, Tennessee, Washington, and Wisconsin. The dataset provides maximum contaminant levels for drinking water and water quality criteria for fresh and marine environments based on acute and chronic exposures. Users can select ARAR sources, drinking water standards and water quality standards, individual chemicals, and retrieve results in tabular or spreadsheet formats for analysis. ARARs are derived from authoritative sources, including federal and state government agencies. The dataset supports environmental risk assessments, regulatory decision-making, and environmental planning, with tools for benchmarking against promulgated standards. This structured approach ensures a robust evaluation of environmental risks tailored to regulatory needs.

Stewart, Debra [Oak Ridge National Laboratory (ORN↗
DOE OSTI2013

Reexamination of the State of the Art Cloud Modeling Shows Real Improvements

Following up on an almost thirty year long history of International Cloud Modeling Workshops, that started out with a meeting in Irsee, Germany in 1985, the 8th International Cloud Modeling Workshop was held in July 2012 in Warsaw, Poland. The workshop, hosted by the Institute of Geophysics at the University of Warsaw, was organized by Szymon Malinowski and his local team of students and co-chaired by Wojciech Grabowski (NCAR/MMM) and Andreas Muhlbauer (University of Washington). International Cloud Modeling Workshops have been held traditionally every four years typically during the week before the International Conference on Clouds and Precipitation (ICCP) . Rooted in the World Meteorological Organization’s (WMO) weather modification program, the core objectives of the Cloud Modeling Workshop have been centered at the numerical modeling of clouds, cloud microphysics, and the interactions between cloud microphysics and cloud dynamics. In particular, the goal of the workshop is to provide insight into the pertinent problems of today’s state-of-the-art of cloud modeling and to identify key deficiencies in the microphysical representation of clouds in numerical models and cloud parameterizations. In recent years, the workshop has increasingly shifted the focus toward modeling the interactions between aerosols and clouds and provided case studies to investigate both the effects of aerosols on clouds and precipitation as well as the impact of cloud and precipitation processes on aerosols. This time, about 60 (?) scientists from about 10 (?) different countries participated in the workshop and contributed with discussions, oral and poster presentations to the workshop’s plenary and breakout sessions. Several case leaders contributed to the workshop by setting up five observationally-based case studies covering a wide range of cloud types, namely, marine stratocumulus, mid-latitude squall lines, mid-latitude cirrus clouds, Arctic stratus and winter-time orographic clouds and precipitation. Interested readers are encouraged to visit the workshop website at http://www.atmos.washington.edu/~andreasm/workshop2012/ and browse through the list of case studies. The web page also provides a detailed list of participants and the workshop agenda. Aside from contributed oral and poster presentations during the workshop’s plenary sessions, parallel breakout sessions focused on presentations and discussions of the individual cases. A short summary and science highlights from each of the cases is presented below.

Cloud↗
DOE OSTI2015

Evolving Obs4MIPs to Support Phase 6 of the Coupled Model Intercomparison Project (CMIP6)

Over the past four years, an initiative known as Observations for Model Intercomparison Projects (Obs4MIPs) has successfully completed its pilot phase by adopting a set of technical protocols (dataset format, metadata standards, and documentation requirements) for dataset contributions, producing datasets that conform to these standards and archiving them for distribution on the Earth System Grid Federation (ESGF) alongside the fifth phase of the Coupled Model Intercomparison Project (CMIP5) model output. This pilot phase of Obs4MIPs, initiated by the National Aeronautics and Space Administration’s (NASA) Jet Propulsion Laboratory (JPL) and the Department of Energy’s (DOE) Program for Climate Model Diagnosis and Intercomparison (PCMDI) at Lawrence Livermore National Laboratory, supported CMIP5 and provided a path to improve the coordination between observational communities and major climate modeling intercomparison projects such as CMIP. Obs4MIPs is now being embraced by the international community, with the World Climate Research Programme (WCRP) Data Advisory Council (WDAC) empaneling a task team to provide guidance and governance for Obs4MIPs at an international level, in conjunction with the existing NASA Science Working Group that is more tightly focused on NASA satellite data products. Here, following the example of the first DOE–NASA Obs4MIPs meeting, and with an initial design of CMIP6 being published, a meeting of over 50 experts in both climate modeling and satellite data from the United States, Europe, Japan, and Australia convened at NASA headquarters in Washington, D.C., for the purpose of planning the evolution of Obs4MIPs and its connection to the CMIP6 experiments.

54 ENVIRONMENTAL SCIENCES↗