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At least 991 records · Page 55

PS3: The Pheno-Synthesis software suite for integration and analysis of multi-scale, multi-platform phenological data

Phenology is the study of recurring plant and animal life-cycle stages which can be observed across spatial and temporal scales that span orders of magnitude (e.g., organisms to landscapes). The variety of scales at which phenological processes operate is reflected in the range of methods for collecting phenologically relevant data, and the programs focused on these collections. Consideration of the scale at which phenological observations are made, and the platform used for observation, is critical for the interpretation of phenological data and the application of these data to both research questions and land management objectives. However, there is currently little capacity to facilitate access, integration and analysis of cross-scale, multi-platform phenological data. This paper reports on a new suite of software and analysis tools – the “Pheno-Synthesis Software Suite,” or PS3 – to facilitate integration and analysis of phenological and ancillary data, enabling investigation and interpretation of phenological processes at scales ranging from organisms to landscapes and from days to decades. We use PS3 to investigate phenological processes in a semi-aride, mixed shrub-grass ecosystem, and find that the apparent importance of seasonal precipitation to vegetation activity (i.e., “greenness”) is affected by the scale and platform of observation. We end by describing potential applications of PS3 to phenological modeling and forecasting, understanding patterns and drivers of phenological activity in real-world ecosystems, and supporting agricultural and natural resource management and decision-making.

54 ENVIRONMENTAL SCIENCES↗

EDX ClaiMM

EDX ClaiMM is a centralized data & analytical platform designed to revolutionize U.S. critical minerals and materials (CMM) activities. By providing a robust digital infrastructure, ClaiMM will accelerate the combination, leveraging, and rapid utilization of vital data, advanced tools, and cutting-edge research advancements in CMM. This adaptive digital research hub connects the CMM community to essential knowledge products and offers access to interoperable datasets, databases, models, software, and tools from the National Energy Technology’s (NETL’s) Energy Data eXchange (EDX) and other authoritative sources, serving both public and private sectors. EDX ClaiMM delivers AI-informed solutions to address fundamental knowledge gaps and fosters the innovation of new techniques for enhanced characterization and recovery of CMMs within the U.S. By leveraging cloud-hosted, scalable digital infrastructure, ClaiMM meets public–private applied energy needs. It equips the CMM community with priority digital resources that harness on-site and cloud compute capabilities, enabling big data storage, advanced processing, analytics, and visualization.

Critical Materials; Critical Minerals; Rare Earth ↗

PIPES (Pipeline for Integrated Projects in Energy Systems) [SWR-24-89]

The Pipeline for Integrated Projects in Energy Systems (PIPES) is a comprehensive project, data, and workflow management tool designed for integrated modeling teams. PIPES facilitates the management of data requirements, tasks, and progress tracking, serving as a higher-level integration layer that works across various data and modeling software. This tool integrates models, data, and tools to perform large-scale, integrated analysis work at scale. PIPES is designed to streamline integrated modeling projects, enhance collaboration, and ensure the quality and efficiency of data management and workflow processes. https://github.com/nrel-pipes/pipes-api https://github.com/nrel-pipes/pipes-web https://github.com/nrel-pipes/nrel-pipes

Gu, Jianli↗

Pipeline for Integrated Projects in Energy Systems (PIPES): A Tool for Integrated System Planning [Slides]

The Pipeline for Integrated Projects in Energy Systems (PIPES) is a comprehensive project, data, and workflow management tool designed for integrated modeling teams. PIPES facilitates the management of data requirements, tasks, and progress tracking, serving as a higher-level integration layer that works across various data and modeling software. This tool integrates models, data, and tools to perform large-scale, integrated analysis work at scale. PIPES is designed to streamline integrated modeling projects, enhance collaboration, and ensure the quality and efficiency of data management and workflow processes. This presentation introduces PIPES a multi-model tool for integrated system planning; it describes the underlying architecture, deep dives into common user workflows, and outlines the upcoming development roadmap beyond its current alpha state.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Advanced Transmission Technologies – GETs and HPCs Session 2: Advanced Power Flow Control and Transmission Topology Optimization

The INL TADA GETs Cohort Session 2, held on November 7, 2025, conducted in collaboration with ScottMadden, focused on two core Advanced Transmission Technologies (ATTs): Advanced Power Flow Control (APFC) and Transmission Topology Optimization (TTO). These technologies are pivotal in enhancing grid flexibility, reliability, and cybersecurity resilience. APFC, particularly through modular FACTS devices like Modular Static Synchronous Series Compensators (M-SSSCs), enables dynamic voltage injection to reroute power flows. The session highlighted the deployment benefits of APFC, such as rapid installation, minimal civil works, and re-deployability. Regulatory drivers like FERC Order 2023 mandate the inclusion of Grid-Enhancing Technologies (GETs) in interconnection studies. Case studies from Central Hudson, CAISO, and National Grid (UK) demonstrated APFC’s effectiveness in congestion relief and cost savings. The session also addressed cybersecurity concerns, including firmware vulnerabilities, SCADA integration risks, and supply chain dependencies. Participants engaged in interactive exercises to rank cybersecurity and supply chain risks, emphasizing the need for robust digital assurance strategies. TTO involves software-based reconfiguration of transmission networks to optimize power flow without new infrastructure. The session showcased its operational value, with examples from SPP, PJM, and MISO showing significant congestion cost reductions. Cybersecurity vulnerabilities were discussed, particularly in API security and software supply chains, referencing incidents like SolarWinds and attacks on Danish utilities. Digital assurance exercises explored worst-case scenarios, attack paths, and mitigation responsibilities between vendors and utilities. Reliability challenges such as algorithm stability, vendor dependency, and operator trust were also examined. Cross-cutting themes emphasized the importance of digital assurance tools, including Software Bills of Materials (SBOMs) and hardware-in-loop testing. Human performance, training, and operational confidence were identified as critical enablers of technology adoption. The session concluded with a preview of Session 3, which will focus on High Performance Conductors (HPCs) and risk-based cybersecurity tools. Session 2 of 3.

24 - POWER TRANSMISSION AND DISTRIBUTION↗

Recent Advances in Analytical Electron Microscopy for Irradiated Materials

Analytical electron microscopy (AEM) in the scanning transmission electron microscope (STEM) has long been a staple of post-irradiation examination (PIE) and materials development campaigns. Recently, new advances in both STEM hardware and post-processing data-analysis software, along with ancillary advances such as in focused ion beam (FIB) sample preparation, has led to exciting advances in the quantity and quality of data that can be obtained. This talk will summarize recent experiments performed at Oak Ridge National Laboratory (ORNL), especially work on neutron-irradiated materials and fuels taking advantage of a newly-installed latest-generation AEM tool in the ORNL irradiated materials laboratories. ORNL installed a new FEI Talos F200X microscope, a 200 keV, high-brightness Schottky emission AEM system optimized for high-speed, high-efficiency X-ray mapping experiments. The F200X features the FEI 'SuperX' four-sector silicon drift detector (SDD) X-ray detector, which provides 0.9 sr solid angle of collection. By combining the high-brightness electron source, latest-generation electron optics, and fast computers and pulse processors, X-ray mapping speed is increased by a factor of 50-100 x compared to the previous-generation instruments. In addition to improvements in hardware, data mining via multivariate statistical analysis (MVSA) allows for maximum insight to the data obtained from the new hardware. MVSA data mining of the X-ray maps allows, for instance, unbiased computational identification of the phases present, and discovery of small phases or precipitates not expected by the human analyst. This talk will present examples of experiments performed using the most modern AEM tools and software. Silicon carbide is a major candidate for next-generation nuclear applications. Nano-infiltration by transient eutectic (NITE) SiC requires low sintering temperatures. X-ray mapping of the NITE structure find pockets of different oxides, such as Zr-Y-oxide, Y-Al-oxide, and yttria. MVSA data mining finds the regions where different oxides are present and indicates that Y additions preferentially wet grain boundaries, where Zr additions are preferentially concentrated at grain triple points. SiC coatings from AGR-I experiment TRISO particles were found to contain significant quantities of fission products (e.g., Pd) as well as actinides (U, Pu). MVSA data mining found complex precipitates and grain boundary films of the fission products and actinides deep (∼several microns) into the SiC layer. Advanced AEM methods, combined with MVSA data mining, makes possible both rapid and detailed PIE. Ferritic alloys, such as accident-tolerant FeCrAl grades, benefit greatly from advanced AEM examination. Neutron-irradiated FeCrAl precipitates the detrimental Cr-rich α' phase. Because the SuperX SDD system has four detectors, it is possible to obtain high X-ray count rates even on a highly tilted specimen, as might be needed to obtain STEM images of dislocation loops. Results on neutron-irradiated FeCrAl indicates that α' size and number density can be obtained by AEM, and MVSA results determine that minor elements (such as Si) has complex radiation-induced segregation behavior at grain boundaries. We have also developed and validated computer models of the AEM experiment, allowing different microstructures' X-ray map results to be simulated for different STEM instruments. This allows X-ray mapping to be more quantitative, such as by estimating what size nanoclusters in an oxide-dispersion strengthened steel would be visible or invisible in STEM. In summary, new advanced AEM technology provides a major leap forward in experiments possible in PIE of irradiated materials. (authors)

36 MATERIALS SCIENCE↗

Dynamic Contingency Analysis Tool 2.0 User Manual with Test System Examples

This document introduces Version 2 of the Dynamic Contingency Analysis Tool (DCAT) software package developed by Pacific Northwest National Laboratory and serves as a guide for using this package to conduct cascading failure simulations for the electric power system. The DCAT is an open-platform and publicly available software; it is intended to help develop applications that aim to improve the capabilities of power system planning engineers to assess the impact and likelihood of extreme contingencies and potential cascading events across their systems and interconnections. Outputs from the DCAT will support finding mitigating actions to reduce the risk of cascading outages in technically sound and effective ways. This manual provides detailed instructions on how to use this tool on multicore Windows workstations or servers. In the public version of DCAT, several improvements have been made over the previous version: (1) it was modularized; (2) a graphical user interface (GUI) was developed; (3) a new version of the MPjobs parallel processing module was incorporated; and (4) a batch-processing function was added. The features of the DCAT GUI are described, including some examples of how to use the GUI to perform simulations. A full explanation of the DCAT methodology is available in the Phase 1 report.

24 POWER TRANSMISSION AND DISTRIBUTION↗

An Extensible Reduced Order Model Builder for Simulation and Modeling

REVEAL is a software framework for building reduced order models (surrogate models) for high fidelity complex scientific simulations. REVEAL is designed to do reduced order modeling and sensitivity analysis for scientific simulations. REVEAL incorporates a range of sampling and regression methods. It provides complete user environment and is adaptable to new simulators, runs jobs on any computing platform of choice, automatically post processes simulation results and provides a range of data analysis tools. The software is generic and can easily be extended to incorporate new methods, simulators.

Source record↗

Resilience Design Patterns: A Structured Approach to Resilience at Extreme Scale

Reliability is a serious concern for future extreme-scale high-performance computing (HPC) systems. Projections based on the current generation of HPC systems and technology roadmaps suggest the prevalence of very high fault rates in future systems. While the HPC community has developed various resilience solutions, application-level techniques as well as system-based solutions, the solution space remains fragmented. There are no formal methods and metrics to integrate the various HPC resilience techniques into composite solutions, nor are there methods to holistically evaluate the adequacy and efficacy of such solutions in terms of their protection coverage, and their performance \& power efficiency characteristics. Additionally, few of the current approaches are portable to newer architectures and software environments that will be deployed on future systems. In this paper, we develop a structured approach to the design, evaluation and optimization of HPC resilience using the concept of design patterns. A design pattern is a general repeatable solution to a commonly occurring problem. We identify the problems caused by various types of faults, errors and failures in HPC systems and the techniques used to deal with these events. Each well-known solution that addresses a specific HPC resilience challenge is described in the form of a pattern. We develop a complete catalog of such resilience design patterns, which may be used by system architects, system software and tools developers, application programmers, as well as users and operators as essential building blocks when designing and deploying resilience solutions. We also develop a design framework that enhances a designer's understanding the opportunities for integrating multiple patterns across layers of the system stack and the important constraints during implementation of the individual patterns. It is also useful for defining mechanisms and interfaces to coordinate flexible fault management across hardware and software components. The resilience patterns and the design framework also enable exploration and evaluation of design alternatives and support optimization of the cost-benefit trade-offs among performance, protection coverage, and power consumption of resilience solutions. Here, the overall goal of this work is to establish a systematic methodology for the design and evaluation of resilience technologies in extreme-scale HPC systems that keep scientific applications running to a correct solution in a timely and cost-efficient manner despite frequent faults, errors, and failures of various types.

97 MATHEMATICS AND COMPUTING↗

Linking in silico MS/MS spectra with chemistry data to improve identification of unknowns

Confident identification of unknown chemicals in high resolution mass spectrometry (HRMS) screening studies requires cohesive workflows and complementary data, tools, and software. Chemistry databases, screening libraries, and chemical metadata have become fixtures in identification workflows. To increase confidence in compound identifications, the use of structural fragmentation data collected via tandem mass spectrometry (MS/MS or MS2) is vital. However, the availability of empirically collected MS/MS data for identification of unknowns is limited. Researchers have therefore turned to in silico generation of MS/MS data for use in HRMS-based screening studies. This paper describes the generation en masse of predicted MS/MS spectra for the entirety of the US EPA’s DSSTox database using competitive fragmentation modelling and a freely available open source tool, CFM-ID. The generated dataset comprises predicted MS/MS spectra for ~700,000 structures, and mappings between predicted spectra, structures, associated substances, and chemical metadata. Together, these resources facilitate improved compound identifications in HRMS screening studies. These data are accessible via an SQL database, a comma-separated export file (.csv), and EPA’s CompTox Chemicals Dashboard.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

URC Assessment Method

This tool evaluates the potential occurrence of URC resources using a series of validated heuristics as outlined in "Creason, C.G., Justman, D., Rose, K. et al. A Geo-Data Science Method for Assessing Unconventional Rare-Earth Element Resources in Sedimentary Systems. Nat Resour Res (2023). https://doi.org/10.1007/s11053-023-10163-x"

Critical Minerals↗

Accelerated Climate Modeling For Energy

This is the final report on the work of the New York University team to the DOE Accelerated Climate Modeling For Energy (ACME) project. NYU was one of the original developers of the UV-CDAT tool for climate data analysis, which is being used in ACME. NYU primarily focused on the analysis package graphical user interface, workflow and provenance functionality. The most significant activities in the last year of the grant were the development of the new plotting system in UVCMetrics package and the package EzLinePlot for 1D plots which are described in detail.

54 ENVIRONMENTAL SCIENCES↗

AIMFAST: Alignment Implementation for Manufacturing

AIMFAST is a software code used to align facets on a dish concentrator to a specific aimpoint strategy to minimize peak fluxes and maximize system optical performance. AIMFAST uses a large monitor or projections screen to display fringe patterns, and a machine vision camera to image the reflection of these patterns in the subject dish mirrors. From these images, a detailed map of surface normals can be generated and compared to design or fitted mirror shapes. This fitted comparison is then used to develop a single vector representing the orientation of the facets relative to the design orientation, and provide near-real-time adjustment information to a communicating computer. The communicating computer can display adjustments or directly interface with adjustment tools. The software for the communicating computer is specific to the implementation and is not a part of AIMFAST.

Source record↗

SOWFA Super-Controller: A High-Fidelity Tool for Evaluating Wind Plant Control Approaches

This paper presents a new tool for testing wind plant controllers in the Simulator for Offshore Wind Farm Applications (SOWFA). SOWFA is a high-fidelity simulator for the interaction between wind turbine dynamics and the fluid flow in a wind plant. The new super-controller testing environment in SOWFA allows for the implementation of the majority of the wind plant control strategies proposed in the literature.

17 WIND ENERGY↗

eLog analysis for accelerators: status and future outlook

This work demonstrates electronic logbook (eLog) systems leveraging modern AI-driven information retrieval capabilities at the accelerator facilities of Fermilab, Jefferson Lab, Lawrence Berkeley National Laboratory (LBNL), SLAC National Accelerator Laboratory. We evaluate contemporary tools and methodologies for information retrieval with Retrieval Augmented Generation (RAGs), focusing on operational insights and integration with existing accelerator control systems. The study addresses challenges and proposes solutions for state-of-the-art eLog analysis through practical implementations, demonstrating applications and limitations. We present a framework for enhancing accelerator facility operations through improved information accessibility and knowledge management, which could potentially lead to more efficient operations.

Accelerator Physics↗

WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans

WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member.

59 BASIC BIOLOGICAL SCIENCES↗