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DOE OSTI2022

Castanha et al. 2018: Hopland Lysimeter 13C-Labeled Root Litter Decomposition Study.

The breakdown and decomposition of plant inputs are critical for nutrient cycling, soil development, and climate-ecosystem feedbacks, but uncertainties persist in how the rates and products of litter decomposition are affected by soil temperature, rhizosphere, and depth of input. To elucidate these questions we measured the effects of soil warming (+ 4 °C), rhizosphere, and depth of litter placement on the decomposition of Avena fatua (wild oat grass) root litter in a Mediterranean grassland ecosystem. Field lysimeters were subjected to three environmental treatments (heating, control, and plant removal) and three 13C-labeled root litter addition treatments (to A horizon, to B horizon, and no-addition disturbance control) for each of two harvest time points. We buried root litter in February 2014 and measured loss of 13C in CO2 from the soil surface and in leachate as dissolved organic carbon (DOC) over two growing seasons. At the end of each of the 2014 and 2015 growing seasons we recovered the 13C remaining in the soil. Loss of root litter C occurred almost entirely via heterotrophic respiration, with an estimated < 2% lost as DOC during the initial decay period. The added roots were broken down and incorporated into bulk soil material very quickly; only ~ 30% of added root was visible after 6 months. In the first growing season, decomposition occurred faster in the B than in the A horizon, the latter having greater moisture limitation. Subsequently, there was almost no further decomposition in the B horizon. After two growing seasons, less than 20% of the added root litter C remained in the A or B horizons of all environmental treatments. Heating did not stimulate decomposition, likely because it exacerbated the moisture limitation. However, while plots without plants dried down more slowly than plots with plants, their decomposition rate was not significantly greater, possibly due to the lack of rhizosphere processes such as priming. We conclude that in this Mediterranean grassland ecosystem, soil moisture, which is affected by season, depth, heating, and rhizosphere, plays a dominant role in mediating the effect of those factors on root litter decomposition, which after two seasons did not differ by depth or by treatment.The files in this dataset comprise (1) 13C-labeled litter additions made to each plot, (2) litter recovery after each of 2 growing seasons, (3) periodical soil flux measurements, (4) leachate measurements, and continuously monitored soil (5) temperature and (6) moisture.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Raw soil carbon dioxide, moisture, temperature and micrometeorological data in the East River Watershed, Colorado June 2021-June 2024. (DE-SC0021139)

This dataset contains raw data from four tripod stations along an elevation gradient on Snodgrass Mountain in the East River Watershed, CO, USA. Each station contains a datalogger connected to 3 soil Carbon Dioxide CO2 gas probes, 3 soil temperature/moisture sensors and a micrometeorological station. Sensors are scanned every minute, and the 30 minute average is reported. The file snodgrass_soil_ESS.csv contains raw data, a row of column descriptors, and units of measurements. some data processing and QA/QC was done to filter out data from sensors that went bad and extreme outliers. CO2 sensors that went bad were replaced with new sensors as soon as possible. This research was performed to investigate the ecohydrological linkages of belowground carbon processes in the East River watershed forested communities to better understand how these ecosystems will respond to a changing cold-season moisture input. This is the second version of this data set and was modified on 10/01/2024. The primary change in the data was the addition of data from the fall of 2022 to June of 2024. In addition, minor QA/QC was done to filter out data from sensors that went bad and extreme outliers. THe filtered data are now NA's in this data frame and primarily the CO2 sensors. Limited to no QA/QC has been done on the other environmental data. This is now the third version of the data set, and was modified 03/25/2026. The primary change in the data was the addition of data from the June of 2024 to December 2025. Further r QA/QC was done with the new data to filter out bad data from faulty sensors and extreme outliers. The filtered data are now NA's in this data frame and primarily the CO2 sensors. Limited to no QA/QC has been done on the other environmental data. ##This additional data was funded under DE-SC0024218( Responses of Plant and Microbial Respiration Sources to Changing Cold Season Climate Drivers in the East River Watershed)

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Substantial and overlooked greenhouse gas emissions from deep Arctic lake sediment - supporting data and code

This data package contains data, descriptions, and code-based analyses that were used to support conclusions drawn in “Substantial and overlooked greenhouse gas emissions from deep Arctic lake sediment”, by Freitas et al. (2025) (https://doi.org/10.1038/s41561-024-01614-y). The study evaluated greenhouse gas production along a deep sediment core (20 m) taken in 2018 from below Goldstream Lake, a field site approximately 15 km north of Fairbanks, Alaska.The file “ESSDive_NFreitas_2024_flmd.csv” includes an overview of all other csv files in this data package, namely: sediment descriptions (depth and type of sediment), sediment characterizations (bulk density, gravimetric water content, total carbon, etc.), calculated respiration and temperature sensitivity values associated with year-long incubations of the sediment core, and the R code used to process the dataset. Additional details regarding the content of these files and how the calculations were performed are described in the Methods section of this archive. The “data_dictionary_ESSDive_NFreitas_2024_dd.csv” is a data dictionary for all files included in the data package. Each row in the data dictionary represents a column name in a given file. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).Data package updates- August 2024: Title was updated, R code now includes a process for calculating potential production across the whole sediment column, the "sediment_column_production_potentials_ESSDive_NFreitas_2024.csv" is the associated data output file, and the file level metadata and data dictionaries were updated to reflect the contents of the additional csv file.- October 2024: Title was updated, and a statement was added to Step 2 of the Methods that describes that samples were collected (and exported) in a responsible manner and in accordance with relevant permits and local laws.- January 2025: Updated the associated manuscript details in the Abstract (manuscript title, publication date, DOI link) and in the Related References section (full citation).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Shrub Expansion Simulations at Trail Valley Creek Tundra site using E3SM Land Model (ELM) Arctic-focused Version

The warming of the Arctic is causing substantial compositional, structural, and functional changes in tundra vegetation including shrub and densification in parts of the Arctic. Assessing the impact of these changes in vegetation composition on the Arctic’s carbon and energy budgets is important to constrain projected local and global surface-atmosphere exchanges. We conduct a sensitivity analysis of the projected surface energy fluxes, soil carbon pools, and carbon dioxide fluxes (net ecosystem exchange, gross primary production, and ecosystem respiration) between present day and 2100 to different shrub expansion rates and air temperature increases under future emission scenarios (intermediate – RCP4.5, and high – RCP8.5) using the Arctic-focused version of the Energy Exascale Earth System Model (E3SM) Land Model (ELM). We focus on Trail Valley Creek (TVC), a mineral upland tundra site located in the western Canadian Arctic, which is experiencing tall shrub densification and expansion. In this study, we run TVC under two different warming scenarios RCP4.5 and RCP 8.5 and simulate different shrubification rates projected until year 2100. In this repository, we include all the forcing, input, parameters, and output data corresponding to all the simulations performed. flmd.csv includes a detailed description of the datasets files.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

The Global Spectra-Trait Initiative: A database of paired leaf spectroscopy and functional traits associated with leaf photosynthetic capacity (v1.0.0)

The Global Spectra-Trait Initiative (GSTI) aims to generate generalizable spectra trait models using reflectance data to predict leaf traits associated with the photosynthesis capacity of leaves. It comprises a synthesized dataset of leaf trait data, input datasets and code. Leaf traits include the maximum carboxylation rate of rubisco (Vcmax), the maximum electron transport rate (Jmax), the dark respiration, as well as the prediction of leaf nitrogen, leaf mass per area (LMA), and leaf water content (LWC). The dataset comprises >7500 paired observations from around 400 species from a broad range of biomes. This dataset comprises a zip file of the GSTI GitHub repository (https://github.com/plantphys/gsti), the synthesized database (.csv) and database metadata files. This dataset was updated on 2025-12-12 with minor edits to mirror the accepted manuscript version and GitHub release (Version 1.0.0 (ESSD accepted version)). Edits included minor changes to the project documentation on GitHub and removal of 12 duplicate entries from the database.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Walker Branch Watershed: Daily Stream Metabolism and Organic Carbon Spiraling Metrics in the West Fork of Walker Branch, Tennessee, USA, 2004-2010

This dataset contains daily metabolism estimates of gross primary production (GPP), ecosystem respiration (ER), and net ecosystem production (NEP), in addition to organic carbon spiraling length (SOC) and mineralization velocity (VfOC) estimates at the West Fork of Walker Branch, a small headwater stream, in the Walker Branch Watershed, Tennessee, USA. Observations were made from 2004-2010 (2004-01-01 to 2010-12-31). These data were generated to assess seasonal and interannual variability in metabolism and organic carbon spiraling and to explore potential driver variables, as analyses of intra- and interannual variability in metabolism and organic carbon spiraling are currently limited, leaving knowledge gaps in the driving mechanisms of and future changes to stream metabolism and carbon processing under climate change. Additionally, measurements of discharge (Q), stream width, stream- and canopy-level photosynthetically active radiation (PAR), water temperature, and precipitation from this time frame are included. This dataset contains one data file in comma separated (*.csv) format.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Gross and Net Soil Methane Flux and Ancillary Data, Edgewater, MD, USA, summer 2022

This data package contains measurements used to quantify methane cycling and environmental conditions in coastal forest soils during the 2022 growing season. It includes time‑series data of soil methane flux, soil respiration, soil temperature, and volumetric water content collected from soil monoliths transplanted along an inundation and salinity gradient. The package also provides one‑time measurements from a stable‑isotope pool‑dilution incubation, including gravimetric water content, methane headspace concentrations, and ¹³CH₄ enrichment over time. Data files are provided in comma‑separated values (CSV) format, with accompanying metadata and readme documentation in PDF and plain‑text formats. All files can be opened with standard software such as R, Python, or spreadsheet programs capable of handling CSV files. The metadata file describes variable definitions, units, processing steps, and the structure of each data table to support reuse and integration with other datasets.

13-C↗

DOE OSTI2015

Final Scientific/Technical Report

The potential for developing commercially viable microbial H 2 -production systems as a renewable source of biofuel has been limited by the need for an anaerobic environment to enable photobiological H 2 -production in capable bacterial and algal species. In this project, we have shown that the cyanobacterium Cyanothece sp. ATCC 51142 has the capacity for highly efficient H 2 -production under natural aerobic conditions. The marine cyanobacterium Cyanothece sp. ATCC 51142 has a diurnal metabolic cycle; photosynthesis and carbon fixation occur during daylight hours and then at night, high rates of respiration create a suboxic intracellular environment that enables O 2 -sensitive processes to occur, including N2-fixation and H 2 -production. We developed a two-stage approach to monitor H 2 -production by Cyanothece 51142. In the first stage, we grew the bacteria aerobically in an alternating 12 hour light/dark cycle. A second ‘incubation’ stage was then carried out in which we took cells from the end of a 12 hour light growth period and incubated them in air-tight vials for a further 12 hours under continuous illumination. Analysis of the headspace in the vial revealed high specific rates of H 2 -production (>150 μmol of H 2 per mg chlorophyll per hour) during this incubation period. Furthermore, the rate of H 2 -production could be enhanced by growing the cells in the presence of high levels of CO 2 or glycerol. We also confirmed that H 2 -production was mediated by the nitrogenase system found in these Cyanothece cells. Interestingly, in the absence of molecular N 2 , nitrogenase systems channel all available electrons towards H 2 -production. Accordingly, when we incubated glycerol-supplemented Cyanothece 51142 cells in the absence of N 2 , the rate of H 2 -production increased up to 467 μmol of H 2 per mg chlorophyll per hour, which is an order of magnitude greater than those rates previously observed in other wild type H 2 producing model photosynthetic microorganisms under anaerobic conditions. As glycerol and CO 2 are both abundantly available as industrial waste products, the fact that they substantially enhance aerobic H 2 -production suggests that Cyanothece 51142 is a potentially viable system for producing biohydrogen as a renewable fuel source. During this project, we have conducted a detailed systems level analysis of this interesting cyanobacterial system, and have created a rich knowledgebase for the use of Cyanothece cells as efficient biohydrogen producers in large scale.

08 HYDROGEN↗

DOE OSTI2017

Aerosol Physics Considerations for Using Cerium Oxide CeO 2 as a Surrogate for Plutonium Oxide PuO 2 in Airborne Release Fraction Measurements for Storage Container Investigations

Cerium oxide (CeO2) dust is recommended as a surrogate for plutonium oxide (PuO2) in airborne release fraction experiments. The total range of applicable particle sizes for PuO2 extends from 0.0032 μm (the diameter of a single PuO2 molecule) to 10 μm (the defined upper boundary for respirable particles). For particulates with a physical particle diameter of 1.0 μm, the corresponding aerodynamic diameters for CeO2 and PuO2 are 2.7 μm and 3.4 μm, respectively. Cascade impactor air samplers are capable of measuring the size distributions of CeO2 or PuO2 particulates. In this document, the aerodynamic diameters for CeO2 and PuO2 were calculated for seven different physical diameters (0.0032, 0.02, 0.11, 0.27, 1.0, 3.2, and 10 μm). For cascade impactor measurements, CeO2 and PuO2 particulates with the same physical diameter would be collected onto the same or adjacent collection substrates. The difference between the aerodynamic diameter of CeO2 and PuO2 particles (that have the same physical diameter) is 39% of the resolution of a twelve-stage MSP Inc. 125 cascade impactor, and 34% for an eight-stage Andersen impactor. An approach is given to calculate the committed effective dose (CED) coefficient for PuO2 aerosol particles, compared to a corresponding aerodynamic diameter of CeO2 particles. With this approach, use of CeO2 as a surrogate for PuO2 material would follow a direct conversion based on a molar equivalent. In addition to the analytical information developed for this document, several US national labs have published articles about the use of CeO2 as a PuO2 surrogate. Different physical and chemical aspects were considered by these investigators, including thermal properties, ceramic formulations, cold pressing, sintering, molecular reactions, and mass loss in high temperature gas flows. All of those US national lab studies recommended the use of CeO2 as a surrogate material for PuO2.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

DOE OSTI2019

A multiscale approach to modeling carbon cycling within a high-elevation watershed (Final Report)

This report is to summarize the technical work completed during the project entitled "A Multiscale Approach to Modeling Carbon and Nitrogen Cycling within a High Elevation Watershed" (Award: DE-SC0014556). The report covers work completed between 08/01/2015 and 07/31/2018. The overarching objective of the work was to conduct a multi-scale reactive transport investigation of C and N in a high-elevation catchment in Colorado for the purposes of evaluating modeling approaches for describing net fluxes of C and N and their relationship to measurable hydrologic parameters. To accomplish this objective, we developed two microcatchment observatories where we have characterized the inventories of carbon and nitrogen and the fluxes of carbon into and out of the soil zone in tandem with environmental parameters, including soil moisture and temperature. We further evaluated watershed-scale carbon fluxes using measured concentration-discharge observations. To characterize the inventories of carbon and nitrogen, we developed a new approach for molecular characterization of soil organic carbon functional group abundance (SOC-fga) and applied this approach to bulk soil and density fractions from 4 profiles across the catchments. The speciation data was paired with radiocarbon and NMR measurements. To characterize fluxes, soil gas concentrations and carbon dioxide flux measurements were made throughout three growing seasons (2016, 2017, 2018) and combined with ground-based and remote sensing estimates of plant phenology. Paired laboratory studies investigated the response of microbial respiration to changing soil moisture as a function of soil depth and landscape position. Two modeling approaches have been developed. The first approach uses a diffusion-reaction approach to calculate the depth profile of carbon dioxide production rates based on measured profiles and surface efflux rates. The second modeling approach, a dormancy-enabled microbial model describes the microbial response to soil moisture by accounting for two distinct microbial strategists.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Implementing an aerosol dynamic shape factor for cerium oxide powder

The shape factor (X B ) of bulk powder CeO 2 (cerium oxide) particles is estimated to be X B = 1.34 (dimensionless). This is defined in relation to the measured aerated bulk density (0.91 g cm -3 , Hosokawa Micron, Summit NJ, 2018) of the CeO 2 powder. This information is used to determine the RRF (respirable release factor), and other parameters during drop test experiments of nuclear material storage containers at Los Alamos National Laboratory. The calculation is based on an experimental shape factor (X P = 2.66 dimensionless) for CeO 2 particles of the same (chain aggregate) morphology studied by other researchers. In that work, the shape factor was defined in terms of the maximum possible (compacted) density of CeO 2 material (7.13 g cm -3 ).

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2021

Maturation of Rhodobacter capsulatus Multicopper Oxidase CutO Depends on the CopA Copper Efflux Pathway and Requires the cutF Product (Final Report)

The goal is to achieve a comprehensive understanding of the nature, mechanism of function and biogenesis of c-type cytochromes and their oligomeric complexes. These cytochrome are ubiquitous heme proteins that are required for cellular bioenergetics, including photosynthesis (Ps) and respiration (Res), which are central to chemical energy (ATP) production by oxidative- and photophosphorylation. We contribute to the molecular characterization of individual and membrane-integral cytochromes as parts of Ps and Res electron transport (ET) pathways, using the facultative phototrophic bacteria of as excellent models for multidisciplinary investigations. Supported by this grant we discovered novel membrane-bound cytochromes and cyts c complexes that are important for Ps- and Res-ET. We worked out their biogenesis including maturation (covalent heme addition) and assembly of mature subunits into complexes. These involve fundamental process found virtually in all organisms and are fundamental processes with major significance to the “Photosynthetic Systems” program of DOE-BES, because the cytochromes are integral components of natural energy production systems. Elucidation of basic principles, and the knowledge gained by their study greatly impact on our ability to design, engineer, and create new natural, bio-hybrid, bio-inspired and artificial systems to better capture light, transduce and store its energy with improved efficacy and are of broad significance.

14 SOLAR ENERGY↗

DOE OSTI2019

BY-110 Headspace Sampling Comparison Test: Volume 1

The Hanford Tank Operations Contractor, Washington River Protection Solutions, conducted comparison tests of two Hanford Waste tank vapor sampling systems to determine the relative differences in quantifying Chemicals of Potential Concern (COPC) while sampling the same waste tank. The systems are the traditional in situ, inline headspace sampling (HS) method and the recently developed slipstream sampling unit for testing respirator chemical cartridges known as the cartridge test (CT) rig. The comparison test was performed to determine if results obtained using the CT rig are similar to results obtained using the traditional HS method. Using the CT rig would provide efficiencies in headspace vapors sampling such as applying ALARA principles, minimizing worker entries to the tank farms, and eliminating the physical strain of manually lowering the headspace sampling bundles into the waste tanks. Six sampling events were conducted during January and February 2018 to collect headspace vapor samples from Hanford tank BY-110 with the two systems. Pacific Northwest National Laboratory was tasked with conducting an analysis of the analytical results to assess the comparability of the sampling methods and make recommendations on future testing or deployment of the CT method.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2019

BY-110 Headspace Sampling Comparison Test: Volume 2: Raw Data

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2017

SPRUCE S1 Bog Sphagnum CO2 Flux Measurements and Partitioning into Re and GPP

This data set provides (1) the results of in-situ Sphagnum-peat hourly net ecosystem exchange (NEE) measured using a LICOR 8100 gas exchange system and (2) the component fluxes -- gross primary production (GPP) and ecosystem respiration (Re), derived using empirical regressions. NEE measurements were made from 6 June to 6 November 2014 and 20 March to 10 May 2015. Three 8100 chambers per dominant species (S. magellanicum or S. fallax) were placed in the S1 Bog in relatively open ground where there was no obvious hummock-hollow microtopography. The 8100 chambers were not located in the SPRUCE experimental enclosures. Measured site meteorological data used as model drivers are also included. All measurements were made at the 8.1-ha S1 bog forest site in northern Minnesota, 40 km north of Grand Rapids, in the USDA Forest Service Marcell Experimental Forest (MEF).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2016

Microbes as engines of ecosystem function: When does community structure enhance predictions of ecosystem processes?

In this study, microorganisms are vital in mediating the earth’s biogeochemical cycles; yet, despite our rapidly increasing ability to explore complex environmental microbial communities, the relationship between microbial community structure and ecosystem processes remains poorly understood. Here, we address a fundamental and unanswered question in microbial ecology: ‘When do we need to understand microbial community structure to accurately predict function?’ We present a statistical analysis investigating the value of environmental data and microbial community structure independently and in combination for explaining rates of carbon and nitrogen cycling processes within 82 global datasets. Environmental variables were the strongest predictors of process rates but left 44% of variation unexplained on average, suggesting the potential for microbial data to increase model accuracy. Although only 29% of our datasets were significantly improved by adding information on microbial community structure, we observed improvement in models of processes mediated by narrow phylogenetic guilds via functional gene data, and conversely, improvement in models of facultative microbial processes via community diversity metrics. Our results also suggest that microbial diversity can strengthen predictions of respiration rates beyond microbial biomass parameters, as 53% of models were improved by incorporating both sets of predictors compared to 35% by microbial biomass alone. Our analysis represents the first comprehensive analysis of research examining links between microbial community structure and ecosystem function. Taken together, our results indicate that a greater understanding of microbial communities informed by ecological principles may enhance our ability to predict ecosystem process rates relative to assessments based on environmental variables and microbial physiology.

respiration↗

DOE OSTI2022

Iodate Reduction by Shewanella oneidensis Requires Genes Encoding an Extracellular Dimethylsulfoxide Reductase

Microbial iodate (IO 3 – ) reduction is a major component of the iodine biogeochemical reaction network in anaerobic marine basins and radioactive iodine-contaminated subsurface environments. Alternative iodine remediation technologies include microbial reduction of IO 3 – to iodide (I – ) and microbial methylation of I – to volatile gases. The metal reduction pathway is required for anaerobic IO 3 – respiration by the gammaproteobacterium Shewanella oneidensis . However, the terminal IO 3 – reductase and additional enzymes involved in the S. oneidensis IO 3 – electron transport chain have not yet been identified. In this study, gene deletion mutants deficient in four extracellular electron conduits (EECs; Δ mtrA , Δ mtrA -Δ mtrDEF , Δ mtrA -Δ dmsEF , Δ mtr A-ΔSO4360) and DMSO reductase (Δ dmsB ) of S. oneidensis were constructed and examined for anaerobic IO 3 – reduction activity with either 20 mM lactate or formate as an electron donor. IO 3 – reduction rate experiments were conducted under anaerobic conditions in defined minimal medium amended with 250 μM IO 3 – as anaerobic electron acceptor. Only the Δ mtrA mutant displayed a severe deficiency in IO 3 – reduction activity with lactate as the electron donor, which suggested that the EEC-associated decaheme cytochrome was required for lactate-dependent IO 3 – reduction. The Δ mtrA -Δ dmsEF triple mutant displayed a severe deficiency in IO 3 – reduction activity with formate as the electron donor, whereas Δ mtrA -Δ mtrDEF and Δ mtr A-ΔSO4360 retained moderate IO 3 – reduction activity, which suggested that the EEC-associated dimethylsulfoxide (DMSO) reductase membrane-spanning protein DmsE, but not MtrA, was required for formate-dependent IO 3 – reduction. Furthermore, gene deletion mutant Δ dmsB (deficient in the extracellular terminal DMSO reductase protein DmsB) and wild-type cells grown with tungsten replacing molybdenum (a required co-factor for DmsA catalytic activity) in defined growth medium were unable to reduce IO 3 – with either lactate or formate as the electron donor, which indicated that the DmsAB complex functions as an extracellular IO 3 – terminal reductase for both electron donors. Results of this study provide complementary genetic and phenotypic evidence that the extracellular DMSO reductase complex DmsAB of S. oneidensis displays broad substrate specificity and reduces IO 3 – as an alternate terminal electron acceptor.

, Shewanella oneidensis↗

DOE OSTI2014

CO2 and CH4 Fluxes across Polygon Geomorphic Types, Barrow, Alaska, 2006-2010

Carbon flux data are reported as Net Ecosystem Exchange (NEE), Gross Ecosystem Exchange (GEE), Ecosystem Respiration (ER), and Methane (CH4) flux. Measurements were made at 82 plots across various polygon geomorphic classes at research sites on the Barrow Environmental Observatory (BEO), the Biocomplexity Experiment site on the BEO, and the International Biological Program (IBP) site a little west of the BEO. ArcView GIS files available of the Land Cover Type Classifications.This product is a compilation of data from 27 plots as presented in Lara et al. (2012), data from six plots presented in Olivas et al. (2010); and from 49 plots described in (Lara et al. 2014). Measurements were made during the peak of the growing seasons during 2006 to 2010. At each of the measurement plots (except Olivas et al., 2010) four different thicknesses of shade cloth were used to generate CO2 light response curves. Light response curves were used to normalize photosynthetically active radiation that is diurnally variable to a peak growing season average ~400 umolm-2sec-1. At the Olivas et al. (2010) plots, diurnal patterns were characterized by repeated sampling. CO2 measurements were made using a closed-chamber photosynthesis system and CH4 measurements were made using a photo-acoustic multi-gas analyzer. In addition, plot-level measurements for thaw depth (TD), water table depth (WTD), leaf area index (LAI), and normalized difference vegetation index (NDVI) are summarized by geomorphic polygon type. Citations can be found within the related references field. This dataset includes one zipped file, one pdf, and one .txt file.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗