Evidence of multiple bacterial, viral, and parasitic infectious disease agents in Mastomys natalensis rodents in riverine areas in selected parts of Zambia
Not Available
Munjita, Samuel Munalula [Department of Biomedical↗
SEARCH · Engineering Papers
Results for “Multiple”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Multiple interacting stressors influence development, growth, and morphology of Pacific Chorus Frog ( Pseudacris regilla ) larvae
Not provided.
Environmental Sciences & Ecology↗
Identification of multiple eigenmode growth rates towards real time detection in DIII-D and KSTAR tokamak plasmas
Abstract The successful application of three-dimensional (3D) magnetohydrodynamic (MHD) spectroscopy enables us to identify the multi-mode eigenvalues in DIII-D and KSTAR tokamak experiments with stable plasmas. The temporal evolution of the multi-modes’ stabilities have been detected. The new method is numerically efficient allowing the real time detection of MHD modes’ stabilities during the discharge. The method performs active detection of the plasma stability by utilizing the upper and lower rows of internal non-axisymmetric coils to apply a wide variety of 3D fields. Multi-mode eigenvalues are extracted using subspace system identification of the plasma response measured by 3D-field magnetic sensors distributed at different poloidal locations. The equivalence of this new method with the one introduced by Wang (2019 Nucl. Fusion 59 024001) has been numerically corroborated. The more robust and efficient calculation developed here will enable real time monitoring of the plasma stability based on the extracted eigenvalues of stable modes.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Stellarator coil optimization supporting multiple magnetic configurations
Abstract We present a technique that can be used to design stellarators with a high degree of experimental flexibility. For our purposes, flexibility is defined by the range of values the rotational transform can take on the magnetic axis of the vacuum field while maintaining satisfactory quasisymmetry. We show that accounting for configuration flexibility during the modular coil design improves flexibility beyond that attained by previous methods. Careful placement of planar control coils and the incorporation of an integrability objective enhance the quasisymmetry and nested flux surface volume of each configuration. We show that it is possible to achieve flexibility, quasisymmetry, and nested flux surface volume to reasonable degrees with a relatively simple coil set through an NCSX-like example. This example coil design is optimized to achieve three rotational transform targets and nested flux surface volumes in each magnetic configuration larger than the NCSX design plasma volume. Our work suggests that there is a tradeoff between flexibility, quasisymmetry, and volume of nested flux surfaces.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
ANNIE: Neutron multiplicity in neutrino interactions and new technologies
The Accelerator Neutrino Neutron Interaction Experiment (ANNIE) aims at measuring the neutron abundance in the final state of neutrino-nucleus interactions. This measurement will have a direct impact on our understanding of neutrino interactions and will lead to a better reduction of systematic errors and an improvement of signal-background discrimination in future large neutrino detectors, thus impacting long baseline oscillation experiments as well as proton decay searches and supernova detection. With a volume of about 26 tons of pure water doped with gadolinium to enhance neutron tagging efficiency, ANNIE will provide a measurement of the neutron yield of neutrino interactions as a function of the neutrino energy in the well-characterized Booster Neutrino Beam at Fermilab. The modularity of ANNIE will allow it to perform several fundamental tests of new technologies to be used in neutrino detectors, such as a novel kind of photodetectors called Large Area Picosecond Photodetectors and Water-based Liquid Scintillator, a newly-developed detection medium. The technology behind the ANNIE detector will have a noticeable impact on the development of future large water Cherenkov detectors as well as on detection techniques for neutrino physics.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
On possibility of space-charge compensation in the Fermilab Booster with multiple electron columns
In this paper we study the possibility of the space-charge compensation in the Fermilab Booster rapid cycling synchrotron with the use of several electron columns and show the significant promise of such technique.
43 PARTICLE ACCELERATORS↗
Drosophila melanogaster pigmentation demonstrates adaptive phenotypic parallelism over multiple spatiotemporal scales
Abstract Populations are capable of responding to environmental change over ecological timescales via adaptive tracking. However, the translation from patterns of allele frequency change to rapid adaptation of complex traits remains unresolved. We used abdominal pigmentation in Drosophila melanogaster as a model phenotype to address the nature, genetic architecture, and repeatability of rapid adaptation in the field. We show that D. melanogaster pigmentation evolves as a highly parallel and deterministic response to shared environmental variation across latitude and season in natural North American populations. We then experimentally evolved replicate, genetically diverse fly populations in field mesocosms to remove any confounding effects of demography and/or cryptic structure that may drive patterns in wild populations; we show that pigmentation rapidly responds, in parallel, in fewer than 15 generations. Thus, pigmentation evolves concordantly in response to spatial and temporal climatic axes. We next examined whether phenotypic differentiation was associated with allele frequency change at loci with established links to genetic variance in pigmentation in natural populations. We found that across all spatial and temporal scales, phenotypic patterns were associated with variation at pigmentation-related loci, and the sets of genes we identified at each scale were largely nonoverlapping. Therefore, our findings suggest that parallel phenotypic evolution is associated with distinct components of the polygenic architecture shifting across each environmental axis to produce redundant adaptive patterns.
Evolutionary Biology↗
Ubiquity and functional uniformity in CO2 concentrating mechanisms in multiple phyla of Bacteria is suggested by a diversity and prevalence of genes encoding candidate dissolved inorganic carbon transporters
ABSTRACT Autotrophic microorganisms catalyze the entry of dissolved inorganic carbon (DIC; = CO2 + HCO3− + CO32−) into the biological component of the global carbon cycle, despite dramatic differences in DIC abundance and composition in their sometimes extreme environments. “Cyanobacteria” are known to have CO2 concentrating mechanisms (CCMs) to facilitate growth under low CO2 conditions. These CCMs consist of carboxysomes, containing enzymes ribulose 1,5-bisphosphate oxygenase and carbonic anhydrase, partnered to DIC transporters. CCMs and their DIC transporters have been studied in a handful of other prokaryotes, but it was not known how common CCMs were beyond “Cyanobacteria”. Since it had previously been noted that genes encoding potential transporters were found neighboring carboxysome loci, α-carboxysome loci were gathered from bacterial genomes, and potential transporter genes neighboring these loci are described here. Members of transporter families whose members all transport DIC (CHC, MDT and Sbt) were common in these neighborhoods, as were members of the SulP transporter family, many of which transport DIC. 109 of 115 taxa with carboxysome loci have some form of DIC transporter encoded in their genomes, suggesting that CCMs consisting of carboxysomes and DIC transporters are widespread not only among “Cyanobacteria”, but also among members of “Proteobacteria” and “Actinobacteria”.
Scott, Kathleen M.↗
Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium
The “genomic shock” hypothesis posits that unusual challenges to genome integrity such as whole genome duplication may induce chaotic genome restructuring. Decades of research on polyploid genomes have revealed that this is often, but not always the case. While some polyploids show major chromosomal rearrangements and derepression of transposable elements in the immediate aftermath of whole genome duplication, others do not. Nonetheless, all polyploids show gradual diploidization over evolutionary time. To evaluate these hypotheses, we produced a chromosome-scale reference genome for the natural allotetraploid grass Brachypodium hybridum, accession “Bhyb26.” We compared 2 independently derived accessions of B. hybridum and their deeply diverged diploid progenitor species Brachypodium stacei and Brachypodium distachyon. The 2 B. hybridum lineages provide a natural timecourse in genome evolution because one formed 1.4 million years ago, and the other formed 140 thousand years ago. The genome of the older lineage reveals signs of gradual post-whole genome duplication genome evolution including minor gene loss and genome rearrangement that are missing from the younger lineage. In neither B. hybridum lineage do we find signs of homeologous recombination or pronounced transposable element activation, though we find evidence supporting steady post-whole genome duplication transposable element activity in the older lineage. Gene loss in the older lineage was slightly biased toward 1 subgenome, but genome dominance was not observed at the transcriptomic level. We propose that relaxed selection, rather than an abrupt genomic shock, drives evolutionary novelty in B. hybridum, and that the progenitor species’ similarity in transposable element load may account for the subtlety of the observed genome dominance.
59 BASIC BIOLOGICAL SCIENCES↗
Mixed waste contamination selects for a mobile genetic element population enriched in multiple heavy metal resistance genes
Abstract Mobile genetic elements (MGEs) like plasmids, viruses, and transposable elements can provide fitness benefits to their hosts for survival in the presence of environmental stressors. Heavy metal resistance genes (HMRGs) are frequently observed on MGEs, suggesting that MGEs may be an important driver of adaptive evolution in environments contaminated with heavy metals. Here, we report the meta-mobilome of the heavy metal-contaminated regions of the Oak Ridge Reservation subsurface. This meta-mobilome was compared with one derived from samples collected from unimpacted regions of the Oak Ridge Reservation subsurface. We assembled 1615 unique circularized DNA elements that we propose to be MGEs. The circular elements from the highly contaminated subsurface were enriched in HMRG clusters relative to those from the nearby unimpacted regions. Additionally, we found that these HMRGs were associated with Gamma and Betaproteobacteria hosts in the contaminated subsurface and potentially facilitate the persistence and dominance of these taxa in this region. Finally, the HMRGs were associated with conjugative elements, suggesting their potential for future lateral transfer. We demonstrate how our understanding of MGE ecology, evolution, and function can be enhanced through the genomic context provided by completed MGE assemblies.
59 BASIC BIOLOGICAL SCIENCES↗
Retrieval of energy spectra for all flavours of neutrinos from core-collapse supernova with multiple detectors
ABSTRACT We present a new method by which to retrieve energy spectrum for all falvours of neutrinos from core-collapse supernova (CCSN). In the retrieval process, we do not assume any analytic formulas to express the energy spectrum of neutrinos but rather take a direct way of spectrum reconstruction from the observed data; the singular value decomposition algorithm with a newly developed adaptive energy-gridding technique is adopted. We employ three independent reaction channels having different flavour sensitivity to neutrinos. Two reaction channels, inverse beta decay on proton and elastic scattering on electrons, from a water Cherenkov detector such as Super-Kamiokande (SK) and Hyper-Kamiokande (HK), and a charged current reaction channel with Argon from the Deep Underground Neutrino Experiment (DUNE) are adopted. Given neutrino oscillation models, we iteratively search the neutrino energy spectra at the CCSN source until they provide the consistent event counts in the three reaction channels. We test the capability of our method by demonstrating the spectrum retrieval to a theoretical neutrino data computed by our recent three-dimensional CCSN simulation. Although the energy spectrum with either electron-type or electron-type antineutrinos at the CCSN source has relatively large error compared to that of other species, the joint analysis with HK + DUNE or SK + DUNE will provide precise energy spectrum of all flavours of neutrinos at the source. Finally, we discuss perspectives for improvements of our method by using neutrino data of other detectors.
79 ASTRONOMY AND ASTROPHYSICS↗
Discovery of multiple p-mode pulsation frequencies in the roAp star, HD 86181
ABSTRACT We report the frequency analysis of a known roAp star, HD 86181 (TIC 469246567), with new inferences from Transiting Exoplanet Survey Satellite (TESS) data. We derive the rotation frequency to be νrot = 0.48753 ± 0.00001 d−1. The pulsation frequency spectrum is rich, consisting of two doublets and one quintuplet, which we interpret to be oblique pulsation multiplets from consecutive, high-overtone dipole, quadrupole, and dipole modes. The central frequency of the quintuplet is 232.7701 d−1 (2.694 mHz). The phases of the sidelobes, the pulsation phase modulation, and a spherical harmonic decomposition all show that the quadrupole mode is distorted. Following the oblique pulsator model, we calculate the rotation inclination, i, and magnetic obliquity, β, of this star, which provide detailed information about the pulsation geometry. The i and β derived from the best fit of the pulsation amplitude and phase modulation to a theoretical model, including the magnetic field effect, slightly differ from those calculated for a pure quadrupole, indicating the contributions from ℓ = 4, 6, 8,... are small. Non-adiabatic models with different envelope convection conditions and physics configurations were considered for this star. It is shown that models with envelope convection almost fully suppressed can explain the excitation at the observed pulsation frequencies.
Shi, Fangfei (ORCID:0000000323998216)↗
Photometric identification of compact galaxies, stars, and quasars using multiple neural networks
We present MargNet, a deep learning-based classifier for identifying stars, quasars, and compact galaxies using photometric parameters and images from the Sloan Digital Sky Survey Data Release 16 catalogue. MargNet consists of a combination of convolutional neural network and artificial neural network architectures. Using a carefully curated data set consisting of 240 000 compact objects and an additional 150 000 faint objects, the machine learns classification directly from the data, minimizing the need for human intervention. MargNet is the first classifier focusing exclusively on compact galaxies and performs better than other methods to classify compact galaxies from stars and quasars, even at fainter magnitudes. This model and feature engineering in such deep learning architectures will provide greater success in identifying objects in the ongoing and upcoming surveys, such as Dark Energy Survey and images from the Vera C. Rubin Observatory.
79 ASTRONOMY AND ASTROPHYSICS↗
The DESI One-Percent Survey: exploring a generalized SHAM for multiple tracers with the UNIT simulation
We perform SubHalo Abundance Matching (SHAM) studies on UNIT simulations with {σ, V ceil , v smear }-SHAM and {σ, V ceil , $f$ sat }-SHAM. They are designed to reproduce the clustering on 5–30 h -1 Mpc of luminous red galaxies (LRGs), emission-line galaxies (ELGs), and quasi-stellar objects (QSOs) at 0.4 < z < 3.5 from DESI (Dark Energy Spectroscopic Instrument) One Percent Survey. V ceil is the incompleteness of the massive host (sub)haloes and is the key to the generalized SHAM. v smear models the clustering effect of redshift uncertainties, providing measurements consistent with those from repeat observations. A free satellite fraction $f$ sat is necessary to reproduce the clustering of ELGs. We find ELGs present a more complex galaxy–halo mass relation than LRGs reflected in their weak constraints on σ. LRGs, QSOs, and ELGs show increasing V ceil values, corresponding to the massive galaxy incompleteness of LRGs, the quenched star formation of ELGs and the quenched black hole accretion of QSOs. For LRGs, a Gaussian v smear presents a better profile for subsamples at redshift bins than a Lorentzian profile used for other tracers. The impact of the statistical redshift uncertainty on ELG clustering is negligible. The best-fitting satellite fraction for DESI ELGs is around 4 per cent, lower than previous estimations for ELGs. The mean halo mass log 10 ($\langle$M vir $\rangle$) in h -1 M ⊙ for LRGs, ELGs, and QSOs are 13.16 ± 0.01, 11.90 ± 0.06, and 12.66 ± 0.45, respectively. Our generalized SHAM algorithms facilitate the production of multitracer galaxy mocks for cosmological tests.
79 ASTRONOMY AND ASTROPHYSICS↗
Auriga Streams – I: disrupting satellites surrounding Milky Way-mass haloes at multiple resolutions
In a hierarchically formed Universe, galaxies accrete smaller systems that tidally disrupt as they evolve in the host’s potential. We present a complete catalogue of disrupting galaxies accreted onto Milky Way-mass haloes from the Auriga suite of cosmological magnetohydrodynamic zoom-in simulations. We classify accretion events as intact satellites, stellar streams, or phase-mixed systems based on automated criteria calibrated to a visually classified sample, and match accretions to their counterparts in haloes re-simulated at higher resolution. Most satellites at the present day have lost substantial amounts of stellar mass – 67 per cent have $f_\text{bound} < 0.97$ (our threshold of lost stellar mass to no longer be considered intact), while 53 per cent satisfy a more stringent $f_\text{bound} < 0.8$. Streams typically outnumber intact systems, contribute a smaller fraction of overall accreted stars, and are substantial contributors at intermediate distances from the host centre ($\sim$0.1 to $\sim 0.7R_\text{200m}$, or $\sim$35 to $\sim$250 kpc for the Milky Way). We also identify accretion events that disrupt to form streams around massive intact satellites instead of the main host. Streams are more likely than intact or phase-mixed systems to have experienced pre-processing, suggesting this mechanism is important for setting disruption rates around Milky Way-mass haloes. All of these results are preserved across different simulation resolutions, though we do find some hints that satellites disrupt more readily at lower resolution. The Auriga haloes suggest that disrupting satellites surrounding Milky Way-mass galaxies are the norm and that a wealth of tidal features waits to be uncovered in upcoming surveys.
galaxies: haloes↗
Successive common envelope events from multiple planets
ABSTRACT Many stars harbour multiplanet systems. As these stars expand late in their evolutions, the innermost planet may be engulfed, leading to a common envelope (CE) event. Even if this is insufficient to eject the envelope, it may expand the star further, causing additional CE events, with the last one unbinding what remains of the envelope. This multiplanet CE scenario may have broad implications for stellar and planetary evolution across a range of systems. We develop a simplified version and show that it may be able to explain the recently observed planet WD 1856 b.
79 ASTRONOMY AND ASTROPHYSICS↗
Predictive models of the genetic bases underlying budding yeast fitness in multiple environments
Abstract The ability of organisms to adapt and survive depends on the effects of genes and the environment on fitness. However, the multigenic nature of fitness and genotype-by-environment interactions hinder our understanding of the genetic basis of fitness. Here, we established fitness prediction models for 35 environments using machine learning and existing fitness data and different genetic variant types for a Saccharomyces cerevisiae population. Models revealed that the predictive ability of genetic variants varied across environments, with copy number variants explaining the majority of fitness variation in most cases. Model interpretation showed that different variant types identified distinct gene sets associated with predictive variants. These gene sets were significantly enriched in experimentally validated genes affecting fitness in only a subset of environments, indicating that many genes influencing fitness remain unexplored. Notably, non-experimentally validated genes were more important than validated ones for fitness predictions. Gene contributions to predictions were both isolate- and environment-dependent, pointing to gene-by-gene and gene-by-environment interactions. Furthermore, models uncovered experimentally validated and novel candidate genetic interactions for a well-characterized stress, the fungicide benomyl. These findings highlight the feasibility of identifying the genetic basis of fitness by using different genetic variant types and offer novel targets for future functional analysis.
DNA copy number variations↗
Optimizing genomic prediction for complex traits via investigating multiple factors in switchgrass
Genomic prediction has accelerated breeding processes and provided mechanistic insights into the genetic bases of complex traits. To further optimize genomic prediction, we assess the impact of genome assemblies, genotyping approaches, variant types, allelic complexities, polyploidy levels, and population structures on the prediction of 20 complex traits in switchgrass (Panicum virgatum L.), a perennial biofuel feedstock. Surprisingly, short read-based genome assembly performs comparably to or even better than long read-based assembly. Due to higher gene coverage, exome capture and multi-allelic variants outperform genotyping-by-sequencing and bi-allelic variants, respectively. Tetraploid models show higher prediction accuracy than octoploid models for most traits, likely due to the greater genetic distances among tetraploids. Depending on the trait in question, different types of variants need to be integrated for optimal predictions. Furthermore, our study provides insights into the factors influencing genomic prediction outcomes, guiding best practices for future studies and for improving agronomic traits in switchgrass and other species through selective breeding.
60 APPLIED LIFE SCIENCES↗