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All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

A Review on Quantitative Multiplexed Proteomics

Over the last few decades, mass spectrometry-based proteomics has become an increasingly powerful tool that is now able to routinely detect and quantify thousands of proteins. A major advance for global protein quantification was the introduction of isobaric tags, which in a single experiment enable the global quantification of proteins across multiple samples. We refer to these methods as multiplexed proteomics. We discuss the principles, advantages, and drawbacks of various multiplexed proteomics techniques, and compare them to alternative approaches. We discuss how the emerging combination of multiplexing with targeted proteomics might enable the reliable and high-quality quantification of very low-abundance proteins across multiple conditions. We suggest that fusing multiplexed proteomics with data-independent acquisition approaches might enable the comparison of hundreds of different samples without missing values while maintaining the superb measurement precision and accuracy obtainable with isobaric tag quantification.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Search for new phenomena in final states with b-jets and missing transverse momentum in $ \sqrt{\mathrm{s}} $ = 13 TeV pp collisions with the ATLAS detector

The results of a search for new phenomena in final states with b -jets and missing transverse momentum using 139 fb - 1 of proton-proton data collected at a centre-of-mass energy s = 13 TeV by the ATLAS detector at the LHC are reported. The analysis targets final states produced by the decay of a pair-produced supersymmetric bottom squark into a bottom quark and a stable neutralino. The analysis also seeks evidence for models of pair production of dark matter particles produced through the decay of a generic scalar or pseudoscalar mediator state in association with a pair of bottom quarks, and models of pair production of scalar third-generation down-type leptoquarks. No significant excess of events over the Standard Model background expectation is observed in any of the signal regions considered by the analysis. Bottom squark masses below 1270 GeV are excluded at 95% confidence level if the neutralino is massless. In the case of nearly mass-degenerate bottom squarks and neutralinos, the use of dedicated secondary-vertex identification techniques permits the exclusion of bottom squarks with masses up to 660 GeV for mass splittings between the squark and the neutralino of 10 GeV. These limits extend substantially beyond the regions of parameter space excluded by similar ATLAS searches performed previously.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2018

Search for top squarks and dark matter particles in opposite-charge dilepton final states at $\sqrt{s}=$ 13 TeV

A search for new physics is presented in final states with two oppositely charged leptons (electrons or muons), jets identified as originating from b quarks, and missing transverse momentum (pTmiss). The search uses proton-proton collision data at s=13 TeV amounting to 35.9 fb-1 of integrated luminosity collected using the CMS detector in 2016. Hypothetical signal events are efficiently separated from the dominant tt¯ background with requirements on pTmiss and transverse-mass variables. No significant deviation is observed from the expected background. Exclusion limits are set in the context of simplified supersymmetric models with pair-produced top squarks. For top squarks, decaying exclusively to a top quark and a neutralino, exclusion limits are placed at 95% confidence level on the mass of the lightest top squark up to 800 GeV and on the lightest neutralino up to 360 GeV. These results, combined with searches in the single-lepton and all-jet final states, raise the exclusion limits up to 1050 GeV for the lightest top squark and up to 500 GeV for the lightest neutralino. For top squarks undergoing a cascade decay through charginos and sleptons, the mass limits reach up to 1300 GeV for top squarks and up to 800 GeV for the lightest neutralino. The results are also interpreted in a simplified model with a dark matter (DM) particle coupled to the top quark through a scalar or pseudoscalar mediator. For light DM, mediator masses up to 100 (50) GeV are excluded for scalar (pseudoscalar) mediators. The result for the scalar mediator achieves some of the most stringent limits to date in this model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Coordinate-Based Seismic Interpolation in Irregular Land Survey: A Deep Internal Learning Approach

Physical and budget constraints often result in irregular sampling, which complicates accurate subsurface imaging. Preprocessing approaches, such as missing trace or shot interpolation, are typically employed to enhance seismic data in such cases. Recently, deep learning has been used to address the trace interpolation problem at the expense of large amounts of training data to adequately represent typical seismic events. Nonetheless, most research in this area has focused on trace reconstruction, with little attention having been devoted to shot interpolation. Furthermore, existing methods assume regularly spaced receivers/sources failing in approximating seismic data from real (irregular) surveys. This work presents a novel shot gather interpolation approach which uses a continuous coordinate-based representation of the acquired seismic wavefield parameterized by a neural network. The proposed unsupervised approach, which we call coordinate-based seismic interpolation (CoBSI), enables the prediction of specific seismic characteristics in irregular land surveys without using external data during neural network training. Importantly, experimental results on real and synthetic 3-D data validate the ability of the proposed method to estimate continuous smooth seismic events in the time-space and frequency-wavenumber domains, improving sparsity or low-rank-based interpolation methods.

58 GEOSCIENCES↗
DOE OSTI2015

WE-G-204-08: Optimized Digital Radiographic Technique for Lost Surgical Devices/Needle Identification

Purpose: Small surgical devices and needles are used in many surgical procedures. Conventionally, an x-ray film is taken to identify missing devices/needles if post procedure count is incorrect. There is no data to indicate smallest surgical devices/needles that can be identified with digital radiography (DR), and its optimized acquisition technique. Methods: In this study, the DR equipment used is a Canon RadPro mobile with CXDI-70c wireless DR plate, and the same DR plate on a fixed Siemens Multix unit. Small surgical devices and needles tested include Rubber Shod, Bulldog, Fogarty Hydrogrip, and needles with sizes 3-0 C-T1 through 8-0 BV175-6. They are imaged with PMMA block phantoms with thickness of 2–8 inch, and an abdomen phantom. Various DR techniques are used. Images are reviewed on the portable x-ray acquisition display, a clinical workstation, and a diagnostic workstation. Results: all small surgical devices and needles are visible in portable DR images with 2–8 inch of PMMA. However, when they are imaged with the abdomen phantom plus 2 inch of PMMA, needles smaller than 9.3 mm length can not be visualized at the optimized technique of 81 kV and 16 mAs. There is no significant difference in visualization with various techniques, or between mobile and fixed radiography unit. However, there is noticeable difference in visualizing the smallest needle on a diagnostic reading workstation compared to the acquisition display on a portable x-ray unit. Conclusion: DR images should be reviewed on a diagnostic reading workstation. Using optimized DR techniques, the smallest needle that can be identified on all phantom studies is 9.3 mm. Sample DR images of various small surgical devices/needles available on diagnostic workstation for comparison may improve their identification. Further in vivo study is needed to confirm the optimized digital radiography technique for identification of lost small surgical devices and needles.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

Search for squarks and gluinos in final states with jets and missing transverse momentum at √s =13 TeV with the ATLAS detector

A search for squarks and gluinos in final states containing hadronic jets, missing transverse momentum but no electrons or muons is presented. The data were recorded in 2015 by the ATLAS experiment in √s=13 TeV proton–proton collisions at the Large Hadron Collider. No excess above the Standard Model background expectation was observed in 3.2 fb -1 of analyzed data. Results are interpreted within simplified models that assume R-parity is conserved and the neutralino is the lightest supersymmetric particle. An exclusion limit at the 95 % confidence level on the mass of the gluino is set at 1.51 TeV for a simplified model incorporating only a gluino octet and the lightest neutralino, assuming the lightest neutralino is massless. For a simplified model involving the strong production of mass-degenerate first- and second-generation squarks, squark masses below 1.03 TeV are excluded for a massless lightest neutralino. Finally, these limits substantially extend the region of supersymmetric parameter space excluded by previous measurements with the ATLAS detector.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Search for dark matter produced in association with a leptonically decaying Z boson in proton-proton collisions at $\sqrt{s} =$ 13 TeV

A search for dark matter particles is performed using events with a Z boson candidate and large missing transverse momentum. The analysis is based on proton–proton collision data at a center-of-mass energy of 13$\,\text {Te}\text {V}$, collected by the CMS experiment at the LHC in 2016–2018, corresponding to an integrated luminosity of 137$\,\text {fb}^{-1}$. The search uses the decay channels ${\mathrm{Z}} \rightarrow {\mathrm{e}} {\mathrm{e}} $ and ${\mathrm{Z}} \rightarrow {{\upmu }{}{}} {{\upmu }{}{}} $. No significant excess of events is observed over the background expected from the standard model. Limits are set on dark matter particle production in the context of simplified models with vector, axial-vector, scalar, and pseudoscalar mediators, as well as on a two-Higgs-doublet model with an additional pseudoscalar mediator. In addition, limits are provided for spin-dependent and spin-independent scattering cross sections and are compared to those from direct-detection experiments. The results are also interpreted in the context of models of invisible Higgs boson decays, unparticles, and large extra dimensions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2019

Evaluation of IMIS7

In 1995 there was an effort to make the IFR Material Information System (IMIS) to allow researchers to easily access the data generated by the IFR program. This was cut short due to funding issues. Now there is a new effort to make this data available to support the qualification of generation IV reactors. This will require migrating IMIS to a new system, and to make updates to IMIS. Some issues with the database structure have been identified as well as minor data holes that would affect models based on these data. Most of the existing documentation that supports these data, and which exist have been found. The database should be redesigned by an expert in database normalization, and NQA-1 compliance. In addition, an archive search needs to be conducted to find critical burnup and fluence data for approximately 2% of the fuel in the database. The database will only need to undergo a small redesign in order to become reactor agnostic, and capable of hosting additional data provided by FFTF. Further research is needed to determine if missing documentation is recoverable.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
NASA NTRS1980

Cytochemical studies of planetary microorganisms explorations in exobiology

Experiments to identify free living organisms in soils that may be substantially simpler in genetic content, and mirroring a more primitive stage of evolution than the species with which we are familiar to date, were designed. Organic chemical studies on the composition and disposition of elementary carbon leave nothing wanting as an aboriginal substrate for the original of life and early chemical evolution. Such studies were missed when it came to the interpretation of the Viking lander data, and needed for conceptual planning of future planetary missions.

Levinthal, E. C.↗
NASA NTRS1986

Tropical synoptic interpretation of inter-channel correlations from Tiros N

Synoptic variability contained in a set of Tiros N channel brightness temperatures was analyzed for a nine-day period during January 1979, between the dateline and 90 deg W and between 30 deg N and 20 deg S. In the procedure, the spatial coherence of each channel is first described in terms of functions of interchannel differences and geographic and synoptic variations. Second, horizontal and vertical pattern of individual channels are examined through empirical orthogonal functional decomposition. Finally, response surface regression models are developed to predict missing Tiros N channels from available Tiros N and NOAA-5 data. The percentage variance was predicted for each channel from the Tiros N microwave and stratospheric channels. Generally speaking, about 80 percent of the variance in each channel can be predicted for the Tiros model, excepting the two tropospheric moisture channels, where prediction was less successful.

Mcguirk, J. P.↗
NASA NTRS2006

CCSDS Time-Critical Onboard Networking Service

The Consultative Committee for Space Data Systems (CCSDS) is developing recommendations for communication services onboard spacecraft. Today many different communication buses are used on spacecraft requiring software with the same basic functionality to be rewritten for each type of bus. This impacts on the application software resulting in custom software for almost every new mission. The Spacecraft Onboard Interface Services (SOIS) working group aims to provide a consistent interface to various onboard buses and sub-networks, enabling a common interface to the application software. The eventual goal is reusable software that can be easily ported to new missions and run on a range of onboard buses without substantial modification. The system engineer will then be able to select a bus based on its performance, power, etc and be confident that a particular choice of bus will not place excessive demands on software development. This paper describes the SOIS Intra-Networking Service which is designed to enable data transfer and multiplexing of a variety of internetworking protocols with a range of quality of service support, over underlying heterogeneous data links. The Intra-network service interface provides users with a common Quality of Service interface when transporting data across a variety of underlying data links. Supported Quality of Service (QoS) elements include: Priority, Resource Reservation and Retry/Redundancy. These three QoS elements combine and map into four TCONS services for onboard data communications: Best Effort, Assured, Reserved, and Guaranteed. Data to be transported is passed to the Intra-network service with a requested QoS. The requested QoS includes the type of service, priority and where appropriate, a channel identifier. The data is de-multiplexed, prioritized, and the required resources for transport are allocated. The data is then passed to the appropriate data link for transfer across the bus. The SOIS supported data links may inherently provide the quality of service support requested by the intra-network layer. In the case where the data link does not have the required level of support, the missing functionality is added by SOIS. As a result of this architecture, re-usable software applications can be designed and used across missions thereby promoting common mission operations. In addition, the protocol multiplexing function enables the blending of multiple onboard networks. This paper starts by giving an overview of the SOIS architecture in section 11, illustrating where the TCONS services fit into the overall architecture. It then describes the quality of service approach adopted, in section III. The prototyping efforts that have been going on are introduced in section JY. Finally, in section V the current status of the CCSDS recommendations is summarized.

Parkes, Steve↗
NASA NTRS1996

Enhanced Water Vapor Absorption within Tropospheric Clouds: A Partial Explanation for Anomalous Absorption

Comparisons between solar flux measurements and predictions obtained from theoretical radiative transfer models indicate that most of these models underestimate the globally averaged solar energy absorbed by cloudy atmospheres by up to 25Wm&sup-2;.The origin of this anomalous absorption has not yet been established, but it has been attributed to a variety of sources including oversimplified or missing physical processes in the existing models, uncertainties in the input data, and even measurement errors. We used a sophisticated atmospheric radiative transfer model to provide improved constraints on the physical processes that contribute to the absorption of solar radiation by Earth's atmosphere. The results are described herein.

solar flux measurement water vapor absorption atmo↗
NASA NTRS2009

Human Research Program Human Health Countermeasures Element Bone and Muscle Risk Standing Review Panel (SRP)

The Bone and Muscle Risk Standing Review Panel (SRP) met at the NASA Johnson Space Center (JSC) on October 4-6, 2009 to discuss the areas of current and future research targeted by the Human Health Countermeasures (HHC) Element of the Human Research Program (HRP). Using evidence-based knowledge as a background for identified risks to astronaut health and performance, NASA had identified gaps in knowledge to address those risks. Ongoing and proposed tasks were presented to address the gaps. The charge to the Bone and Muscle Risk SRP was to review the gaps, evaluate whether the tasks addressed these gaps and to make recommendations to NASA s HRP Science Management Office regarding the Panel's review. The Bone and Muscle Risk SRP consisted of scientists who are experts in muscle, bone, or both and could evaluate the existing evidence with sufficient knowledge of the potential effects of long duration exposure to microgravity. More important, although expertise in basic science is important, the SRP was requested to evaluate the practicality of the proposed efforts in light of the realistic demands placed on the HRP. In short, all tasks presented in the Integrated Research Plan (IRP) should address specific questions related to the challenges faced by the astronauts as a result of prolonged exposure to microgravity. All tasks proposed to fill the gaps in knowledge should provide applied, translational data necessary to answer the specific questions. Several presentations were made to the SRP during the site visit and the SRP spent sufficient time to address the panel charge, either as a group or in separate sessions for the Bone and Muscle Risk subgroups. The SRP made a final debriefing to the HRP Program Scientist, Dr. John B. Charles, on October 6, 2009. Taking the evidence and identified risks as givens, the SRP concluded that 1) integration of information should lead to a more comprehensive approach to identifying the gaps, 2) not all tasks addressed the gaps as stated in the IRP, 3) better access should be given to the SRP to existing data to include in its review, and 4) there were some missing gaps and tasks. As a result the SRP recommended 1) combining certain gaps, which in some cases were addressed with identical tasks, 2) additional gaps and tasks to address some of the gaps, 3) deleting some gaps and tasks to better focus the efforts of NASA s HRP in prioritizing their efforts, and 4) prioritizing gaps to address significant issues needing resolution in the short term while maintaining an awareness of long-term goals. The SRP commended the efforts by the HHC Element to integrate knowledge gaps and design tasks to address the higher order questions. This integration did not apply to the Bone and Muscle Risk alone, but the musculoskeletal system as its functions integrate with issues in

Glowacki, Julie↗
NASA NTRS2012

Explanation Capabilities for Behavior-Based Robot Control

A recent study that evaluated issues associated with remote interaction with an autonomous vehicle within the framework of grounding found that missing contextual information led to uncertainty in the interpretation of collected data, and so introduced errors into the command logic of the vehicle. As the vehicles became more autonomous through the activation of additional capabilities, more errors were made. This is an inefficient use of the platform, since the behavior of remotely located autonomous vehicles didn't coincide with the "mental models" of human operators. One of the conclusions of the study was that there should be a way for the autonomous vehicles to describe what action they choose and why. Robotic agents with enough self-awareness to dynamically adjust the information conveyed back to the Operations Center based on a detail level component analysis of requests could provide this description capability. One way to accomplish this is to map the behavior base of the robot into a formal mathematical framework called a cost-calculus. A cost-calculus uses composition operators to build up sequences of behaviors that can then be compared to what is observed using well-known inference mechanisms.

Huntsberger, Terrance L.↗
NASA NTRS2013

Packaging Technologies for High Temperature Electronics and Sensors

This paper reviews ceramic substrates and thick-film metallization based packaging technologies in development for 500 C silicon carbide (SiC) electronics and sensors. Prototype high temperature ceramic chip-level packages and printed circuit boards (PCBs) based on ceramic substrates of aluminum oxide (Al2O3) and aluminum nitride (AlN) have been designed and fabricated. These ceramic substrate-based chip-level packages with gold (Au) thick-film metallization have been electrically characterized at temperatures up to 550 C. A 96% alumina based edge connector for a PCB level subsystem interconnection has also been demonstrated recently. The 96% alumina packaging system composed of chip-level packages and PCBs has been tested with high temperature SiC devices at 500 C for over 10,000 hours. In addition to tests in a laboratory environment, a SiC JFET with a packaging system composed of a 96% alumina chip-level package and an alumina printed circuit board mounted on a data acquisition circuit board was launched as a part of the MISSE-7 suite to the International Space Station via a Shuttle mission. This packaged SiC transistor was successfully tested in orbit for eighteen months. A spark-plug type sensor package designed for high temperature SiC capacitive pressure sensors was developed. This sensor package combines the high temperature interconnection system with a commercial high temperature high pressure stainless steel seal gland (electrical feed-through). Test results of a packaged high temperature capacitive pressure sensor at 500 C are also discussed. In addition to the pressure sensor package, efforts for packaging high temperature SiC diode-based gas chemical sensors are in process.

Chen, Liang-Yu↗
NASA NTRS2013

Packaging Technologies for High Temperature Electronics and Sensors

This paper reviews ceramic substrates and thick-film metallization based packaging technologies in development for 500degC silicon carbide (SiC) electronics and sensors. Prototype high temperature ceramic chip-level packages and printed circuit boards (PCBs) based on ceramic substrates of aluminum oxide (Al2O3) and aluminum nitride (AlN) have been designed and fabricated. These ceramic substrate-based chiplevel packages with gold (Au) thick-film metallization have been electrically characterized at temperatures up to 550degC. A 96% alumina based edge connector for a PCB level subsystem interconnection has also been demonstrated recently. The 96% alumina packaging system composed of chip-level packages and PCBs has been tested with high temperature SiC devices at 500degC for over 10,000 hours. In addition to tests in a laboratory environment, a SiC JFET with a packaging system composed of a 96% alumina chip-level package and an alumina printed circuit board mounted on a data acquisition circuit board was launched as a part of the MISSE-7 suite to the International Space Station via a Shuttle mission. This packaged SiC transistor was successfully tested in orbit for eighteen months. A spark-plug type sensor package designed for high temperature SiC capacitive pressure sensors was developed. This sensor package combines the high temperature interconnection system with a commercial high temperature high pressure stainless steel seal gland (electrical feed-through). Test results of a packaged high temperature capacitive pressure sensor at 500degC are also discussed. In addition to the pressure sensor package, efforts for packaging high temperature SiC diode-based gas chemical sensors are in process.

Electronic packaging↗
NASA NTRS2017

Small Orbital Stereo Tracking Camera Technology Development

Any exploration vehicle assembled or Spacecraft placed in LEO or GTO must pass through this debris cloud and survive. Large cross section, low thrust vehicles will spend more time spiraling out through the cloud and will suffer more impacts.Better knowledge of small debris will improve survival odds. Current estimated Density of debris at various orbital attitudes with notation of recent collisions and resulting spikes. Orbital Debris Tracking and Characterization has now been added to NASA Office of Chief Technologists Technology Development Roadmap in Technology Area 5 (TA5.7)[Orbital Debris Tracking and Characterization] and is a technical gap in the current National Space Situational Awareness necessary to safeguard orbital assets and crews due to the risk of Orbital Debris damage to ISS Exploration vehicles. The Problem: Traditional orbital trackers looking for small, dim orbital derelicts and debris typically will stare at the stars and let any reflected light off the debris integrate in the imager for seconds, thus creating a streak across the image. The Solution: The Small Tracker will see Stars and other celestial objects rise through its Field of View (FOV) at the rotational rate of its orbit, but the glint off of orbital objects will move through the FOV at different rates and directions. Debris on a head-on collision course (or close) will stay in the FOV at 14 Km per sec. The Small Tracker can track at 60 frames per sec allowing up to 30 fixes before a near-miss pass. A Stereo pair of Small Trackers can provide range data within 5-7 Km for better orbit measurements.

Bryan, Tom↗