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At least 991 records · Page 55

Molecular modeling of calmodulin: a comparison with crystallographic data

Two methods of side-chain placement on a modeled protein have been examined. Two molecular models of calmodulin were constructed that differ in the treatment of side chains prior to optimization of the molecule. A virtual bond analysis program developed by Purisima and Scheraga was used to determine the backbone conformation based on 2.2 angstroms resolution C alpha coordinates for the molecules. In the first model, side chains were initially constructed in an extended conformation. In the second model, a conformational grid search technique was employed. Calcium ions were treated explicitly during energy optimization using CHARMM. The models are compared to a recently published refined crystal structure of calmodulin. The results indicate that the initial choices for side-chains, but also significant effects on the main-chain conformation and supersecondary structure. The conformational differences are discussed. Analysis of these and other methods makes possible the formulation of a methodology for more appropriate side-chain placement in modeled proteins.

NASA Discipline Exobiology↗

A simple element for multilayer beams in NASTRAN thermal stress analysis

In the application of NASTRAN, structural members are usually represented by bar elements with multipoint constraint cards to enforce the interface conditions. While this is a very powerful method in principle, it was found that in practice the process for specification of constraints became tedious and error prone, unless the geometry was simple and the number of grid points low. An alternative approach was found within the framework of the NASTRAN program. This approach made use of the idea that a thermal distortion in a multilayer beam may be similar to a homogeneous beam with a thermal gradient across the cross section. The exact mathematical derivation for the equivalent beam, and all the necessary formulae for the equivalent parameters in NASTRAN analysis are presented. Some numerical examples illustrate the simplicity and ease of this approach for finite element analysis.

Chen, W. T.↗

Analysis of Doppler lidar wind measurements

New analysis methods were developed and refined for the synthesis of wind fields from multiple Doppler radar data. Considerable software was written and debugged for wind field synthesis. The analysis methods were applied to radar data collected during the CCOPE experiment in which lidar wind measurements were also made. The analysis method differs from existing methods in that interpolation (using filters with assigned weights) and advection of data, to account for time differential between data acquisition at different points, are not used. Instead, functional fits were used in space and time coordinates to transfer radial velocity data to a space-time grid. Subsequently the wind synthesis is performed. This method gives better space resolution in the synthesized winds, compared to other methods in common use, by better preserving the gradients of velocities. The wind fields show the cellular structure characteristic of boundary-layer convection. Also evident in the analysis are the sharp transitions and gradients in the wind field which were preserved by the synthesis.

Srivastava, R. C.↗

Impact of Demographic Siting Criteria and Environmental Suitability on Land Availability for Nuclear Reactor Siting

The effect of population and certain environmental characteristics on the availability of land for siting nuclear power plants was assessed. The study area, consisting of the 48 contiguous states, was divided into 5 kilometer (km) square grid cells yielding a total of 600,000 cells. Through the use of a modern geographic information system, it was possible to provide a detailed analysis of a quite large area. Numerous maps and statistical tables were produced, the detail of which were limited only by available data. Evaluation issues included population density, restricted lands, seismic hardening, site preparation, water availability, and cost factors.

Hansen, K. L.↗

Postprocessing for the UCLA climate model

Postprocessing programs written to analyze the results of a general circulation model are described. The model history data is interpolated to pressure surfaces, converted from 64-bit Cyber words to 32 bit IBM words, and transferred to tape for further analysis. The time average program reads the interpolation output tape and produces 15-day time averages. The model outputs a very detailed record for selected grid points. This data is sent to a tape in Cyber full words. The conversion program changes the format of the tape from 64 bit Cyber words to 32 bit IBM words, processing a month of data at a time. The grid-point history sorting program inputs the converted grid point history tape and sorts it by time. The end product is a tape with a time history of each field for every point. After the PBP data has been stored, it can be plotted. The plotting package is flexible, and allows the choice of fields and grid points. The one-dimensional fields are plotted as functions of time, and a daily summary is also produced. For the two-dimensional fields, time-height cross sections and daily summaries are produced. The model plotting package produces plots for all fields on the time average and pressure tapes. These plots include world maps, polar projections, zonal means, vectors, streamlines, and latitude-height plots.

Abeles, J.↗

An implicit time-marching method for studying unsteady flow with massive separation

A fully implicit time-marching method is developed such that all spatial derivatives are approximated using central differences, but no use is made of any artificial dissipation. The numerical method solves the discretized equations using Alternating Direction Implicit-Block Gaussian Elimination technique. The method is implemented in the unsteady analysis, which solves the incompressible Navier-Stokes equations in terms of vorticity and stream function in generalized orthogonal coordinates. A clustered conformal C-grid is employed, and every effort is made to resolve the various length scales in the flow problem. The metric discontinuity at the branch-cut is treated appropriately using analytic continuation. Introduction of the BGE reordering permits implicit treatment of the branch cut in the numerical method. The vorticity singularity at the cusped trailing edge is also appropriately treated. This accurate and efficient implicit method is used to study flow at Re = 1000, past a 12-percent thick symmetric Joukowski airfoil at high angle of attack 30 and 53 deg.

Osswald, G. A.↗

Space station integrated wall design and penetration damage control. Task 4: Impact detection/location system

A program to develop a methodology is documented for detecting and locating meteoroid and debris impacts and penetrations of a wall configuration currently specified for use on space station. Testing consisted of penetrating and non-penetrating hypervelocity impacts on single and dual plate test configurations, including a prototype 1.22 m x 2.44 m x 3.56 mm (4 ft x 8 ft x 0.140 in) aluminum waffle grid backwall with multilayer insulation and a 0.063-in shield. Acoustic data were gathered with transducers and associated data acquisition systems and stored for later analysis with a multichannel digitizer. Preliminary analysis of test data included sensor evaluation, impact repeatability, first waveform arrival, and Fourier spectral analysis.

Nelson, J. M.↗

Octree based automatic meshing from CSG models

Finite element meshes derived automatically from solid models through recursive spatial subdivision schemes (octrees) can be made to inherit the hierarchical structure and the spatial addressability intrinsic to the underlying grid. These two properties, together with the geometric regularity that can also be built into the mesh, make octree based meshes ideally suited for efficient analysis and self-adaptive remeshing and reanalysis. The element decomposition of the octal cells that intersect the boundary of the domain is emphasized. The problem, central to octree based meshing, is solved by combining template mapping and element extraction into a procedure that utilizes both constructive solid geometry and boundary respresentation techniques. Boundary cells that are not intersected by the edge of the domain boundary are easily mapped to predefined element topology. Cells containing edges (and vertices) are first transformed into a planar polyhedron and then triangulated via element extractors. The modeling environments required for the derivation of planar polyhedra and for element extraction are analyzed.

Perucchio, Renato↗

Geometrical and topological issues in octree based automatic meshing

Finite element meshes derived automatically from solid models through recursive spatial subdivision schemes (octrees) can be made to inherit the hierarchical structure and the spatial addressability intrinsic to the underlying grid. These two properties, together with the geometric regularity that can also be built into the mesh, make octree based meshes ideally suited for efficient analysis and self-adaptive remeshing and reanalysis. The element decomposition of the octal cells that intersect the boundary of the domain is discussed. The problem, central to octree based meshing, is solved by combining template mapping and element extraction into a procedure that utilizes both constructive solid geometry and boundary representation techniques. Boundary cells that are not intersected by the edge of the domain boundary are easily mapped to predefined element topology. Cells containing edges (and vertices) are first transformed into a planar polyhedron and then triangulated via element extractor. The modeling environments required for the derivation of planar polyhedra and for element extraction are analyzed.

Saxena, Mukul↗

A gridding approach to detect patterns of change in coastal wetlands from digital data

The conversion of land to water or water to land in the Grand Bayou wetlands area from 1972 to 1981 is evaluated on the basis of Landsat MSS band 2 and 4 images. A postclassification (land vs water) procedure is employed, and grids 1, 5, 10, 25, and 50 pixels square are superimposed on the classified data in an effort to reduce the effects of poor georegistration of the images (simulated by shifting one set of grids two pixels vertically and horizontally). The results are presented in tables, maps, and sample images and characterized in detail. Grids 5 or 10 pixels square are found to give percentage land/water change values and locations similar to those obtained in pixel-by-pixel analysis of nearly perfectly matched images.

Pelletier, R. E.↗

Supersonic far-field boundary conditions for transonic small-disturbance theory

Characteristic far-field boundary conditions for supersonic freestream flow have been developed and implemented within a transonic small-disturbance code. The boundary conditions have been implemented within the CAP-TSD code which has been developed recently for aeroelastic analysis of complete aircraft configurations. These boundary conditions improve the accuracy of the solutions for supersonic freestream applications. They also allow the extent of the grid to be much smaller, thus providing savings in the computational time required to obtain solutions. Comparisons are shown between surface pressures computed using large and small grid extents for the NACA 0012 airfoil and the F-5 wing at various Mach numbers and angles of attack. Both steady and unsteady results are presented and comparisons are made with Euler results and with experimental data to assess the accuracy of the new far-field boundary conditions. Comparisons of these results show that the supersonic boundary conditions allow a much smaller grid to be used without losing accuracy.

Gibbons, Michael D.↗

Computational analysis of flow in 3D propulsive transition ducts

A numerical analysis of fully three dimensional, statistically steady flows in propulsive transition ducts being considered for use in future aircraft of higher maneuverability is investigated. The purpose of the transition duct is to convert axisymmetric flow from conventional propulsion systems to that of a rectangular geometry of high aspect ratio. In an optimal design, the transition duct would be of minimal length in order to reduce the weight penalty, while the geometrical change would be gradual enough to avoid detrimental flow perturbations. Recent experiments conducted at the Propulsion Aerodynamics Branch have indicated that thrust losses in ducts of superelliptic cross-section can be surprisingly low, even if flow separation occurs near the divergent walls. In order to address the objective of developing a rational design procedure for optimal transition ducts, it is necessary to have available a reliable computational tool for the analysis of flows achieved in a sequence of configurations. Current CFD efforts involving complicated geometries usually must contend with two separate but interactive aspects: namely, grid generation and flow solution. The first two avenues of the present investigation were comprised of suitable grid generation for a class of transition ducts of superelliptic cross-section, and the subsequent application of the flow solver PAB3D to this geometry. The code, PAB3D, was developed as a comprehensive tool for the solution of both internal and external high speed flows. The third avenue of investigation has involved analytical formulations to aid in the understanding of the nature of duct flows, and also to provide a basis of comparison for subsequent numerical solutions. Numerical results to date include the generation of two preliminary grid systems for duct flows, and the initial application of PAB3D to the corresponding geometries, which are of the class tested experimentally.

Sepri, Paavo↗

A comparative analysis of two land surface heterogeneity representations

Two contrasting representations of land surface variability used in general circulation models (GCMs) are compared through an analysis of their corresponding surface energy balance equations. In one representation (the 'mixture' approach), different vegetation types are assumed to be homogeneously mixed over a grid square, so that the GCM atmosphere sees near-surface conditions pertaining to the mixture only. In the second representation (the 'mosaic' approach), different vegetation types are viewed as separate 'tiles' of a grid-square 'mosaic', and each tile interacts with the atmosphere independently. The mosaic approach is computationally simpler and in many ways more flexible than the mixture approach. Analytical solutions to the linearized energy balance equations and numerical solutions to the nonlinear equations both demonstrate that the mixture strategy, when applied to two coexisting vegetation types that differ only in canopy transpiration resistance, promotes both total turbulent flux and latent heat flux relative to the mosaic strategy. The effective differences between the strategies, however, are small over a wide range of conditions. In particular, the strategies are effectively equivalent when the transpiration resistances of the different vegetation types are of the same order of magnitude.

Koster, Randal D.↗

Multigrid properties of upwind-biased data reconstructions

The multigrid properties of two data reconstruction methods used for achieving second-order spatial accuracy when solving the two-dimensional Euler equations are examined. The data reconstruction methods are used with an implicit upwind algorithm which uses linearized backward-Euler time-differencing. The solution of the resulting linear system is performed by an iterative procedure. In the present study only regular quadrilateral grids are considered, so a red-black Gauss-Seidel iteration is used. Although the Jacobian is approximated by first-order upwind extrapolation, two alternative data reconstruction techniques for the flux integral that yield higher-order spatial accuracy at steady state are examined. The first method, probably most popular for structured quadrilateral grids, is based on estimating the cell gradients using one-dimensional reconstruction along curvilinear coordinates. The second method is based on Green's theorem. Analysis and numerical results for the two dimensional Euler equations show that data reconstruction based on Green's theorem has superior multigrid properties as compared to the one-dimensional data reconstruction method.

Warren, Gary P.↗

Status of Axisymmetric CFD of an Eleven Inch Diameter Hybrid Rocket Motor

Current status of a steady state, axisymmetric analysis of an experimental 11 inch diameter hybrid rocket motor internal flow field is given. The objective of this effort is to develop a steady state axisymmetric model of the 11 inch hybrid rocket motor which can be used as a design and/or analytical tool. A test hardware description, modeling approach, and future plans are given. The analysis was performed with FDNS implementing several finite rate chemistry sets. A converged solution for a two equation and five species set on a 'fine' grid is shown.

Ruf, Joseph↗

Improvements to the Unstructured Mesh Generator MESH3D

The AIRPLANE process starts with an aircraft geometry stored in a CAD system. The surface is modeled with a mesh of triangles and then the flow solver produces pressures at surface points which may be integrated to find forces and moments. The biggest advantage is that the grid generation bottleneck of the CFD process is eliminated when an unstructured tetrahedral mesh is used. MESH3D is the key to turning around the first analysis of a CAD geometry in days instead of weeks. The flow solver part of AIRPLANE has proven to be robust and accurate over a decade of use at NASA. It has been extensively validated with experimental data and compares well with other Euler flow solvers. AIRPLANE has been applied to all the HSR geometries treated at Ames over the course of the HSR program in order to verify the accuracy of other flow solvers. The unstructured approach makes handling complete and complex geometries very simple because only the surface of the aircraft needs to be discretized, i.e. covered with triangles. The volume mesh is created automatically by MESH3D. AIRPLANE runs well on multiple platforms. Vectorization on the Cray Y-MP is reasonable for a code that uses indirect addressing. Massively parallel computers such as the IBM SP2, SGI Origin 2000, and the Cray T3E have been used with an MPI version of the flow solver and the code scales very well on these systems. AIRPLANE can run on a desktop computer as well. AIRPLANE has a future. The unstructured technologies developed as part of the HSR program are now targeting high Reynolds number viscous flow simulation. The pacing item in this effort is Navier-Stokes mesh generation.

Thomas, Scott D.↗

Ocean-Atmosphere Interaction in Climate Changes

The diagram, which attests the El Nino teleconnection observed by the NASA Scatterometer (NSCAT) in 1997, is an example of the results of our research in air-sea interaction - the core component of our three-part contribution to the Climate Variability Program. We have established an interplay among scientific research, which turns spacebased data into knowledge, a push in instrument technology, which improves observations of climate variability, and an information system, which produces and disseminates new data to support our scientific research. Timothy Liu led the proposal for advanced technology, in response to the NASA Post-2002 Request for Information. The sensor was identified as a possible mission for continuous ocean surface wind measurement at higher spatial resolution, and with the unique capability to measure ocean surface salinity. He is participating in the Instrument Incubator Program to improve the antenna technology, and is initiating a study to integrate the concept on Japanese missions. He and his collaborators have set up a system to produce and disseminate high level (gridded) ocean surface wind/stress data from NSCAT and European missions. The data system is being expanded to produce real-time gridded ocean surface winds from Quikscat, and precipitation and evaporation from the Tropical Rain Measuring Mission. It will form the basis for a spacebased data analysis system which will include momentum, heat and water fluxes. The study on 1997 El Nino teleconnection illustrates our interdisciplinary and multisensor approach to study climate variability. The diagram shows that the collapse of trade wind and the westerly wind anomalies in the central equatorial Pacific led to the equatorial ocean warming. The equatorial wind anomalies are connected to the anomalous cyclonic wind pattern in the northeast Pacific. The anomalous warming along the west coast of the United States is the result of the movement of the pre-existing warm sea surface temperature anomalies with the cyclonic wind anomalies toward the coast. The results led to a new study which identifies decadal ocean variations in the Northeast Pacific. Three studies of oceanic responses to wind forcing caused by the seasonal change of monsoons, the passage of a typhoon, and the 1997 El Nino, were successfully conducted. Besides wind forcing, we continue to examine new techniques for estimating thermal and hydrologic fluxes, through the inverse ocean mixed-layer model, through divergence of atmospheric water transport, and by direct retrieval from radiances observed by microwave radiometers. Greenhouse warming has been linked to water vapor measured by two spaceborne sensors in two studies. In the first study, strong baroclinicity and deep convection were found to transport water vapor to the upper atmosphere and increase greenhouse trapping over the storm tracks of the North Pacific and Atlantic. In another study, the annual cycle of greenhouse warming were related to sea surface temperature (SST) and integrated water vapor, and the latitudinal dependence of the magnitudes and phases of the annual cycles were compared.

Liu, W. Timothy↗

NASA Tech Briefs, May 2007

Topics include: Noise-Canceling Helmet Audio System; Program Analyzes Spacecraft/Ground Radio Links; Two-Way Communication Using RFID Equipment and Techniques; Six-Message Electromechanical Display System; Scanning Terahertz Heterodyne Imaging Systems; Master Clock and Time-Signal-Distribution System; Synchronous Phase-Resolving Flash Range Imaging; Integrated Radial Probe Transition From MMIC to Waveguide; Bar-Code System for a Microbiological Laboratory; MMIC Amplifier Produces Gain of 10 dB at 235 GHz; Mapping Nearby Terrain in 3D by Use of a Grid of Laser Spots; Digital Beam Deflectors Based Partly on Liquid Crystals; Narrow-Band WGM Optical Filters With Tunable FSRs; Better Finite-Element Analysis of Composite Shell Structures; Computing Spacecraft-Pointing Vectors for Limb Tracking; Enhanced Master Controller Unit Tester; Rover Graphical Simulator; Increasing Durability of Flame-Sprayed Strain Gauges; Multifunctional, High-Temperature Nanocomposites; Multilayer Impregnated Fibrous Thermal Insulation Tiles; Radiation-Shielding Polymer/Soil Composites; Film/Adhesive Processing Module for Fiber-Placement Processing of Composites; Fabrication of Submillimeter Axisymmetric Optical Components; Electrochemical Disposal of Hydrazines in Water; Statistical Model of Evaporating Multicomponent Fuel Drops; Resistively Heated SiC Nozzle for Generating Molecular Beams; Compact Packaging of Photonic Millimeter-Wave Receiver; Diffractive Combiner of Single-Mode Pump Laser-Diode Beams; Wide-Band, High-Quantum-Efficiency Photodetector; A Robustly Stabilizing Model Predictive Control Algorithm; Modeling Evaporation of Drops of Different Kerosenes; Development of Vapor-Phase Catalytic Ammonia Removal System; Several Developments in Space Tethers; Design Concept for a Nuclear Reactor-Powered Mars Rover; Formation-Initialization Algorithm for N Spacecraft; and DNSs of Multicomponent Gaseous and Drop-Laden Mixing Layers Achieving Transition to Turbulence.

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