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At least 991 records · Page 55

Computationally Accelerated Discovery and Experimental Demonstration of High-Performance Materials for Advanced Solar Thermochemical Hydrogen Production

This project achieved its overarching goal of accelerating the discovery and validation of solar thermochemical hydrogen (STCH) materials through a tightly integrated approach that combined high-throughput computational screening, advanced machine learning (ML), and experimental testing. Guided by the objectives outlined in the Statement of Project Objectives (SOPO), our work fulfilled all major milestones across four technical tasks and delivered scientific breakthroughs and practical tools that significantly exceeded the original scope of the project. We began by addressing the challenge of predicting material phase stability through machine learning. A novel Python module was developed to generate thousands of meaningful features from composition, structure, and electronic properties, enabling rapid and reproducible ML model development. Using these tools, we trained a model to predict temperature-dependent Gibbs energies (G(T)) for inorganic crystalline materials with near-chemical accuracy—roughly 40 meV/atom—marking the first such descriptor of its kind. We also introduced a new machine-learned tolerance factor, τ, that accurately predicted perovskite formability with over 90% success, outperforming traditional heuristic models, such as the Goldschmidt tolerance factor. These capabilities allowed for rapid and accurate predictions of phase stability across a vast oxide composition space, setting the stage for high-throughput thermodynamic screening. Building on this foundation, we conducted an extensive computational screening of candidate STCH oxide materials. Over 1.1 million perovskite compositions were evaluated using the τ descriptor, leading to the identification of more than 27,000 predicted stable structures. Using density functional theory (DFT), we refined over 68,000 multinary perovskite structures and computed oxygen vacancy formation energies for over 1,300 ternary and double perovskites. These calculations enabled us to isolate compounds with redox behavior consistent with STCH requirements and resulted in a public dataset now hosted on the Materials Project. Recognizing that thermodynamic screening alone is insufficient, we addressed kinetic limitations by developing a suite of tools to estimate transition state (TS) energies for key redox reactions. We implemented a novel bounding approach that provides lower and upper estimates of TS energies with dramatically reduced computational cost, requiring less than 10% of the CPU time of a full nudged elastic band (NEB) calculation while maintaining high accuracy. This enabled rapid evaluation of over 200 reaction pathways across 90 materials. To further accelerate screening, we developed a SISSO-based ML model to predict diffusion barriers with a 96.7% success rate in classifying fast vs. slow materials, supporting a robust, data-driven framework for assessing redox kinetics. Experimental validation was critical to confirming the predictive power of our models. We synthesized and tested a wide array of candidate materials, including Mn-doped hercynite and several Gd- and La-based perovskites. Notably, Sr 0.4 Gd 0.6 Mn 0.6 Al 0.4 O 3 (SGMA) and Gd 0.5 La 0.5 Co 0.5 Fe 0.5 O 3 (GLCF) emerged as leading STCH materials, exhibiting robust redox cycling and high hydrogen yields exceeding 150 µmol H 2 /g per cycle. These materials also retained over 50% of their hydrogen productivity under high-conversion conditions (H 2 O:H 2 = 1333:1), demonstrating strong thermodynamic favorability and promising performance under industrially relevant scenarios. Additional candidates, such as La 2 MnNiO 6 (L2MN), were found to produce even higher yields than ceria under standard STCH conditions. Our collaborators at Sandia National Laboratories confirmed these findings using high-temperature X-ray diffraction and thermogravimetric analysis, observing stable phase evolution and reversible redox activity. In several respects, the project went beyond the goals initially outlined in the SOPO. We published 17 peer-reviewed articles, including a large dataset of over 66,000 theoretical perovskites and a new structure prediction method (SPuDS-DFT) that accurately identifies ground-state structures at a fraction of the cost of traditional DFT. We demonstrated that our machine-learned G(T) model offers accuracy rivaling quasiharmonic calculations while being orders of magnitude faster. In partnership with the Materials Project, we made our datasets openly available, providing a powerful new resource for the broader materials science community. The combined computational and experimental advances of this project represent a significant advance in STCH materials discovery. By creating a robust, generalizable, and open workflow for thermodynamic and kinetic screening, and validating key findings through synthesis and reactor testing, we have provided a practical and scalable pathway for the rapid identification of new redox-active materials. The tools, data, and materials developed under this project are already supporting ongoing research and have laid the groundwork for the next generation of solar fuel technologies.

08 HYDROGEN↗

Modular Autonomous Experimentation for Biological Applications (Full Report)

The Modular Autonomous Research System (MARS) was developed to address the pressing need for faster, more reliable, and more adaptable scientific discovery. Traditional experimentation is limited by manual labor, long cycle times, and fragmented data streams, which constrain the ability to explore complex chemical and materials design spaces. To overcome these limitations, we created an integrated, modular platform that combines laboratory robotics, diverse measurement instruments, and a central data infrastructure with artificial intelligence–driven decision-making. The system links liquid handling robots, robotic arms, and optical plate readers into a closed loop where experiments are executed automatically, data is analyzed in real time, and subsequent experimental conditions are adaptively chosen to maximize information gain. Over the course of the project, MARS was validated on two primary test cases—spectroscopic metal–ligand binding assays and peptide-directed mineralization—which highlighted the system’s ability to handle uncertainty and variability in experimental measurements. To further demonstrate modularity and extensibility, we also established additional testbeds in electrochemistry for catalyst discovery and electrolyte formulation for advanced batteries. The results show that MARS can reliably conduct autonomous campaigns with minimal human intervention, adapt to distinct scientific domains, and provide a scalable model for future self-driving laboratories. This work establishes new capabilities for modular, uncertainty-aware automation and directly supports the need for advanced, data-driven research platforms capable of accelerating discovery across a wide range of scientific and national security missions.

59 BASIC BIOLOGICAL SCIENCES↗

Thermal Hydraulic Experimental Test Article: Second Year of Testing with Secondary Sodium System (Fiscal Year 2025 Final Report)

The Thermal Hydraulic Experimental Test Article (THETA) is currently installed in the Mechanisms Engineering Test Loop (METL) 28” test vessel #4. Both the primary and secondary sodium systems remain online to facilitate continued testing. This fiscal year, work was performed using a COMSOL Multiphysics magnetohydrodynamic model to characterize flow more accurately in the secondary electromagnetic flowmeters. Experimental campaigns were then performed to study the thermal hydraulic differences between sodium and water as a surrogate fluid in the THETA geometry as well as a study to better characterize and understand temperature oscillations that exist at the outlet of the core to the hot pool. A peer-reviewed article was published in the ASME Journal of Nuclear Engineering and Radiation Science detailing the THETA facility and providing an overview of a test that was performed with the primary and secondary system online [1]. Work continues to develop a database to house experimental THETA data to better facilitate collaboration with industry and laboratory partners for their use of the data for code benchmarking/validation. THETA remains fully operational and is positioned for continued testing in fiscal year 2026.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Long-Term Evaluation of Remedial Technology Performance in the Laboratory: Multi-year Experimental Test Plan

An understanding of the long-term effectiveness of remediation technologies is central to sustainable environmental cleanup. Long-term experiments are valuable for reducing uncertainty and predicting remediation outcomes at scales required for regulatory compliance. However, these types of tests can be costly and challenging to interpret. Therefore, contaminated sites often rely on short-term laboratory experiments that may not account for the potentially significant effects of gradual, time- dependent processes governing contaminant retention, release, and species transformation. For example, short-term lab experiments (from months to a year) conducted with sediments from the unsaturated and saturated zones at the Hanford Site play an important role in initial evaluations of remediation technologies but cannot capture the full extent of time-dependent reactions, leaving uncertainties in field-scale deployment. Here, long-term testing will be conducted on select technologies based on their performance in short-term testing. The overall objective is to directly address the challenges described above by generating and analyzing data on long-term (2–10 years) efficacy of selected remediation technologies, integrating this understanding into models, and providing critical input for remediation planning, monitoring, and 5-year review cycles for field-implemented remedies. Specific objectives include: 1. Evaluating long-term efficiency of promising remedies under site-specific conditions. 2. Generating robust parameters for modeling, reducing uncertainty in predictive simulations. 3. Advancing integrated monitoring by combining geochemical and geophysical observations. 4. Informing field-scale implementation by incrementally advancing technologies, identifying failure mechanisms early, and prioritizing robust, cost-effective remedies. Through systematic evaluation of technologies in laboratory-scale column experiments, integrated monitoring, and modeling support, this project is designed to bolster confidence in the long-term robustness of selected technologies. The ultimate outcome is the identification and deployment of more reliable, cost-effective remedies that safeguard human health and the environment while reducing the uncertainties that have historically hindered cleanup progress at Hanford Site. An experimental approach was developed and initiated for long-term testing potentially up to 10 years. The table below summarizes the experimental approach developed for testing select technologies and presented in this multi-year experimental test plan.

54 ENVIRONMENTAL SCIENCES↗

Advancing Building Air Leakage Measurement and Modeling: Measurement of Interior Air Leaks, Experimental Comparison to Conventional Methods, and Building Modeling Characteristics

This report, Advancing Building Air Leakage Measurement and Modeling: Measurement of Interior Air Leaks, Experimental Comparison to Conventional Methods, and Building Modeling Characteristics, developed two new building air leakage measurement methods, experimentally evaluated the performance in comparison to conventional methods, experimentally evaluated the behavior of leaks for specific crack structures, and identified testing constraints and model implications.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Uncertainties and Limitations of Experimental Thrust and Pressure Gain Measurements in a Rotating Detonation Combustor

Experimentally measuring the pressure gain through the method of equivalent available pressure is prone to many experimental uncertainties. This study performs a detailed uncertainty analysis of the thrust and pressure gain measurements utilizing data from a H2/air operated rotating detonation combustor with an axial air inlet and a 50% exit constriction. The measured (negative) pressure gain values agree with the results in literature for similar inlet-to-exit area ratios. Specific considerations are given to the uncertainty in thrust measurement introduced by the base drag correction on the inner-body. The assumed unity Mach number utilized in the equivalent available pressure methodology is evaluated experimentally with two different methods using time-averaged measurements at the exhaust plane. A definitive demonstration of gain will be challenging given the assessed uncertainties, but recommendations are given to increase the precision of the equivalent available pressure methodology to estimate pressure gain.

33 ADVANCED PROPULSION SYSTEMS↗

SPRUCE Terrestrial Laser Scanning of Experimental Plots, Beginning in 2015

This data set comprises terrestrial laser scanning (TLS) point clouds from the SPRUCE experimental plots located in the S1-Bog of the Marcell Experimental Forest (MEF) near Grand Rapids, Minnesota. In 2015 and 2020 the 12 experimental SPRUCE plots were scanned near peak foliage ("summer”). In 2016-2019 and 2021-2023 the 12 plots were scanned prior to green up ("spring”) and once near peak foliage (Table 1). Additional data will be added through summer 2025. A RIEGL VZ-1000 unit was used to collect all scans. Four TLS scans in each plot were registered to produce a single point cloud per plot using RiSCAN PRO v2.3 software. Up to six additional scans were registered to account for data occlusion when necessary. Point clouds are saved in LAS (*.las) 1.2 format. Point clouds were geo-registered to surveyed plot locations. There are 192 *.las files provided with this dataset.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Microtopography of Experimental Plots Derived from Terrestrial Laser Scans Beginning in 2016

This dataset consists of maps and summaries of very high resolution (1 cm2) spatial data derived from terrestrial laser scans (TLS) characterizing the microtopography (hummocks and hollows) in 12 SPRUCE experimental plots from 2016-2018. The SPRUCE experiment is located in the S1-Bog of the Marcell Experimental Forest (MEF) near Grand Rapids, Minnesota. Additional data will be added through Summer 2021.The TLS sampling plan follows the SPRUCE experimental design, with scanning of the ten enclosed treatment plots with five temperature treatments (0, 2.25, 4.5, 6.75, and 9°C) with and without elevated CO2 (~900 ppm) and the two monitored ambient plots without enclosures. Enclosures are octagonal in shape and are 12.8 m in diameter (114.8 m2 in area), 8 m tall, with a belowground corral that penetrates through the peat to glacial material below, which averages 2.5 m deep across the site. In the spring of each year, four TLS scans were taken per plot/enclosure and registered together to produce a single point cloud for each plot (Figure 2A). Digital surface models (DSMs) were generated from the point clouds and clipped to the inside boundary of the boardwalk in each plot resulting in an approximately 9 x 9 m study area. . All other characterization data types were derived from plot DSMs (elevation), including: slope (Figure 3), concavity (Figure 4), index used for microform classification (Hollow Index) (Figure 6), and microforms (Figure 2C; hummocks and hollows) classified using three methodologies.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Tritium in Porewater of SPRUCE Experimental Plots and Neighboring Peatlands, and in Groundwater, Stream Water, and Precipitation of the S1 Bog, 2014-2016

This data set reports the tritium concentrations in (1) porewater from selected SPRUCE experimental plots located in the S1 bog and in (2) groundwater, streamwater, and precipitation in the S1 bog watershed, and (3) in porewater from the S2 bog, S3 fen, and Bog Lake fen. All sites are located at the USDA Forest Service, Marcell Experimental Forest (MEF) near Grand Rapids, MN. Samples were collected between June of 2014 and August of 2016. These data include samples collected pre- and post-belowground warming treatments associated with the SPRUCE Experiment. There are 10 experimental plots in SPRUCE: 5 temperature treatments (+0, +2.25, +4.5, +6.75, +9°C) at ambient CO2, and the same 5 temperature treatments at elevated CO2 (+500 ppm). Porewater samples in this dataset were collected from three of the warming treatment plots (+0, +4.5, +9°C) at ambient CO2.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Ground Observations of Phenology in Experimental Plots, 2018

This data set consists of phenological transition dates, as derived from direct observations of vegetative and reproductive phenology recorded by a human observer, from the SPRUCE experiment during 2018, the third full year of whole-ecosystem warming (Hanson et al. 2017). Both spring and autumn phenological events are included. Since April 2016, human observers have been directly tracking the phenology of both woody and herbaceous species on a weekly schedule within the SPRUCE experimental chambers. The observed date report here is the first survey date on which an event/phenophase was definitively observed. The SPRUCE experiment is located within the S1 peat bog at the Marcell Experimental Forest, approximately 40 km north of Grand Rapids in north-central Minnesota, USA. User note: Ground observations of phenology from 2016-2020 are available. See SPRUCE Ground Observations of Phenology in Experimental Plots, 2021 https://doi.org/10.25581/spruce.094/1874936 for the most recent data as well as links to all other ground phenology datasets.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Ground Observations of Phenology in Experimental Plots, 2019

This data set consists of phenological transition dates, as derived from direct observations of vegetative and reproductive phenology recorded by a human observer, from the SPRUCE experiment during 2019, the third full year of whole-ecosystem warming (Hanson et al. 2017). Both spring and autumn phenological events are included. Since April 2016, human observers have been directly tracking the phenology of both woody and herbaceous species on a weekly schedule within the SPRUCE experimental chambers. The observed date report here is the first survey date on which an event/phenophase was definitively observed. The SPRUCE experiment is located within the S1 peat bog at the Marcell Experimental Forest, approximately 40 km north of Grand Rapids in north-central Minnesota, USA. User note: Ground observations of phenology from 2016-2021 are available. See SPRUCE Ground Observations of Phenology in Experimental Plots, 2021 https://doi.org/10.25581/spruce.094/1874936 for the most recent data as well as links to all other ground phenology datasets.

54 ENVIRONMENTAL SCIENCES↗

SPRUCE Vertical Profiles of CO2 and H2O Concentrations in Air in Experimental Plots Beginning in 2015

This dataset provides a record of hourly average CO2 and H2O concentrations in air at 4 vertical locations (0.5, 1, 2, and 4 m above ground level (agl)) on the central tower location for each of 13 SPRUCE experimental plots. Ten plots have enclosures (plots 4, 6, 8, 10, 11, 13, 16, 17, 19, and 20) and three plots (5, 7 and 21) are ambients without enclosures. Data are included for measurement periods beginning in 2015 and extend throughout the whole ecosystem warming (WEW) manipulations for the SPRUCE Project (Hanson et al. 2016, 2017). In August 2015, WEW was initiated at 5 warming levels (+0, +2. +4.5, +6.75 and +9 °C) with 2 plots per warming level. DPH measurements were underway before the initiation of WEW heating treatments and both are expected to operate through 2025. Elevated CO2 treatments were initiated within 5 experimental plots (Plots 4, 10, 11, 16 and 19) in June of 2016. All measurements were made at the 8.1-ha S1 bog forest site in northern Minnesota, 40 km north of Grand Rapids, in the USDA Forest Service Marcell Experimental Forest (MEF).

54 ENVIRONMENTAL SCIENCES↗

ATOMIC Simulations and Experimental Data for Basalt-like Compounds

This data consists of simulations and experimental measurements of laser-induced breakdown spectroscopy (LIBS). The simulations are produced by ATOMIC, a general purpose plasma modeling and kinetics code that has been designed to compute emission (or absorption) spectra from plasmas [2]. The makeup of the plasma was considered to be divided into some proportion water, some proportion Martian atmosphere (CO2), and some proportion target (from the rock or object impacted by the laser), where these proportions add to 1. Based on expert knowledge, the proportion of water was kept in the range [0.0,0.5] and the proportion of atmosphere was kept in the range [0.02, 0.9]. Our overall suite of simulations contains six sets of simulations that differ in which elements were considered to make up the target. Within each set, we used uniformly drawn temperatures and log mass densities within pre-specified ranges. The temperature range was [0.5,1.5] eV and the log (base 10) mass density range was [-7,-4]. The proportion of water, atmosphere, and target were drawn from a symmetric Dirichlet distribution, but draws in which the propor- tion of water or atmosphere exceeded the pre-specified limits were rejected from the design. Up to eleven constituent elements (Si, Al, Fe, Mg, Ca, O, Ti, Mn, Na, K, P) were considered for the target, as they are the most common elements found in basalt compounds and were used in [1]. For each run, the proportions of the constituent elements making up the target were drawn from a symmetric Dirichlet distribution. We ran 1,350 simulations that included nonzero proportions of all eleven elements. We also ran simulations which excluded some of these elements. In particular, we ran 1,000 simulations that only included nonzero proportions for the six most common elements (Si, Al, Fe, Mg, Ca, O). We also ran five sets, each with 500 simulations, that only included nonzero proportions for five of the six most common elements (but where all sets included O). Thus, we generated a total of 4,850 spectra representing basalt-like compounds in which the target was comprised of oxygen and between four and ten other elements. The ATOMIC code produced spectra over a range of 240nm - 880nm that roughly mimics the range collected by the ChemCam instrument on the Mars rover Curiosity. Each spectra had 32,000 wavelengths split across three spectrometer ranges (to mimic ChemCam). The experimental data, described in [1], measures a prepared basalt sample. All files are kept in directories whose names indicate the set of elements considered for the target with file names numbered to indicate the line in the design files used to produce the simulation. The designs are provided as text files with names indicating their purpose. The experimental data is provided as a CSV file which contains a header with measurement information, followed by a collection of 50 shots across a collection of wavelengths, along with the computed median and mean across shots.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

PNNL DataHub Project: Omics Lethal Human Viruses Project Profiling of the Host Response to Ebola Virus Infection, Processed Experimental Dataset Catalog

Ebola virus (EBOV) is high risk biological agent, classified as a Category A priority pathogen (Flaviviridae) by the National Institute of Allergy and Infectious Diseases (NIAID), known to cause hemorrhagic fever with high mortality rates in humans. Lethal host-pathogen invasion mechanisms and the cellular intricacies behind these fatal infections still remain unclear. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013-2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. Herein, PNNL sub-projects provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open-access to viral Omics datasets and project lifecycle metadata. Secondary host-pathogen viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics (P), metabolomics (M), lipidomics (L), and transcriptomics (T) dataset downloads each have a direct relationship to a primary sample submission corresponding to a specific Ebola virus [NCBITAXON:186536] (Zaire/Makona or Zaire/Mayinga) experimental infection study. Human host samples types include peripheral blood mononuclear cells isolated from blood plasma ["PBMC", BTO:0001025], human hepatoma carcinoma cells ["HUH", BTO:0001950], human umbilical vein endothelial cells ["HUVEC", BTO:0001949], immortalized human hepatocyte cells ["IHH", BTO:0006147], and human histiocytic lymphoma cells ["U937", BTO:0001412].

59 BASIC BIOLOGICAL SCIENCES↗

PNNL DataHub Project: Omics Lethal Human Viruses Project Profiling of the Host Response to Influenza A Virus Infection, Processed Experimental Dataset Catalog

Influenza A virus (IAV) is a high risk biological agent, classified as a Category C priority pathogen (Orthomyxoviridae) by the National Institute of Allergy and Infectious Diseases (NIAID), and is known to cause severe respiratory disease with high mortality rates in humans. Lethal host-pathogen invasion mechanisms and the cellular intricacies behind these fatal infections still remain unclear. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013-2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. Herein, PNNL sub-projects provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open-access to viral Omics datasets and project lifecycle metadata. Secondary host-pathogen viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics (P), metabolomics (M), lipidomics (L), and transcriptomics (T) dataset downloads each have a direct relationship to a primary sample submission corresponding to a specific Influenza A virus [NCBITAXON:11320] experimental infection study. Host sample types include human lung adenocarcinoma cells ["Calu-3", BTO:0002750] and whole mouse lung [BTO:0000763] tissue collections.

59 BASIC BIOLOGICAL SCIENCES↗

PNNL DataHub Project: Omics Lethal Human Viruses Project Profiling of the Host Interferon-Stimulated Response to Virus Infection, Processed Experimental Dataset Catalog

Human Interferon (IFN) alpha, beta, and gamma participate in the body's natural immune response to lethal virus infection and disease.The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013 - 2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013-2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. Herein, PNNL sub-projects provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open-access to viral Omics datasets and project lifecycle metadata. Secondary host-associated viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Transcriptomics (T) dataset downloads each have a direct relationship to a primary sample submission corresponding to a specific Human Interferon (IFN), interferon alpha (IFNα), interferon beta (IFNβ), and/or interferon gamma (IFNγ) stimulated response to an experimental virus infection treatment study. Host sample types include cerebellum ["CB", BTO:0000232], cortical neurons ["CN", BTO:0004102], cortex ["CT", BTO:0000233], dendritic cells ["DC", BTO:0002042], granule cell neurons ["GCN", BTO:0003393], lymph node ["LN", BTO:0000784], and serum ["SE", BTO:0001239] from mouse (Mus musculus) tissue collections.

59 BASIC BIOLOGICAL SCIENCES↗

Omics Lethal Human Viruses Project Profiling of the Host Response to MERS-CoV Infection, Processed Experimental Dataset Catalog

Middle East Respiratory Syndrome coronavirus (MERS-CoV) is classified as a Category C priority pathogen (Coronaviridae) by the National Institute of Allergy and Infectious Diseases (NIAID), and is known to cause severe respiratory disease with high mortality rates in humans. Lethal host-pathogen invasion mechanisms and the cellular intricacies behind these fatal infections still remain unclear. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013-2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. Herein, PNNL sub-projects provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open-access to viral Omics datasets and project lifecycle metadata. Secondary host-pathogen viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics (P), metabolomics (M), lipidomics (L), and transcriptomics (T) dataset downloads each have a direct relationship to a primary sample submission corresponding to a specific MERS-CoV [NCBITAXON:1335626] experimental infection study. Host sample types include human lung adenocarcinoma cells ["Calu-3", BTO:0002750], human bronchial epithelial cells ["Calu-3 clone 2B4"; BTO:0002022], primary human fibroblasts ["FB"; BTO:0000452], primary human airway epithelial cells ["HAE"; BTO:0005571], human microvascular endothelial cells ["HMVE"; BTO:0003123], and whole mouse lung [BTO:0000763] tissue collections.

59 BASIC BIOLOGICAL SCIENCES↗

PNNL DataHub Project: Omics Lethal Human Viruses Project Profiling of the Host Response to West Nile Virus Infection, Processed Experimental Dataset Catalog

West Nile virus (WNV) is classified as a Category B priority pathogen (mosquito-borne Flavivirus) by the National Institute of Allergy and Infectious Diseases (NIAID), and are known to cause severe infections in humans where lethal host-associated mechanisms are not clearly defined. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013 - 2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. The NIAID Modeling Host Responses to Understand Severe Human Virus Infections Research Program project (2013-2018) aimed to develop an improved comprehensive understanding of the host response to a suite of viruses causing lethal infections leveraging a systems biology approach. Herein, PNNL sub-projects provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open-access to viral Omics datasets and project lifecycle metadata. Secondary host-pathogen viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics (P), metabolomics (M), lipidomics (L), and transcriptomics (T) dataset downloads each have a direct relationship to a primary sample submission corresponding a specific West Nile virus [NCBITAXON:11082] (WNV-NY99 382) experimental infection study. Host sample types include cerebellum ["CB", BTO:0000232], cortical neurons ["CN", BTO:0004102], cortex ["CT", BTO:0000233], dendritic cells ["DC", BTO:0002042], granule cell neurons ["GCN", BTO:0003393], lymph node ["LN", BTO:0000784], and serum ["SE", BTO:0001239] from mouse (Mus musculus) tissue collections.

59 BASIC BIOLOGICAL SCIENCES↗