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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 991 records · Page 55
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Role of Chromatin assembly factor 1 in DNA replication of Plasmodium falciparum

Highlights: • PfCAF1 interacts with several proteins including PfCAF2, Histones and PfHP1. • PfCAF1 and PfHP1 share similar binding sites in the genome of P. falciparum during ring and schizont stages. • PfCAF1 co-localizes with newly synthesized histone mark H3K56Ac. • PfCAF1 expression upregulates after DNA damage along with PCNA. Nucleosome assembly in P. falciparum could be the key process in maintaining its genomic integrity as DNA replicates more than once per cell cycle during several stages of its life cycle. Here, we report the functional characterization of P. falciparum chromatin assembly factor 1 (CAF1), which interacts with several proteins namely PfCAF2, Histones, PfHP1 and others. Consistent with the above findings, we demonstrate the presence of PfCAF1 at the telomeric repeat regions, central and subtelomeric var genes of multiple var gene family along with PfHP1. Further, we report the upregulation of PfCAF1 after treatment with genotoxic agents like MMS and HU. Together, these findings establish role of PfCAF1 in heterochromatin maintenance and as histone chaperone in nucleosome assembly and DNA damage repair.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

The growth and assembly of organic molecules and inorganic 2D materials on graphene for van der Waals heterostructures

The unique properties of graphene have made it a promising material for integration in future electronic applications. The idealized surface of graphene, atomically-flat and without dangling bonds, offers the opportunity to understand the assembly of organic and inorganic molecules to form a wide range of ordered architectures and functional graphene-based heterostructures. In this review, we summarize recent progress in the growth of hierarchical nanostructures on graphene. The self-assembly of organic molecules and inorganic two-dimensional (2D) layers on graphene for the construction of various types of heterostructures are highlighted. Van der Waals interactions between the assembled molecules and graphene are shown to allow the formation of highly-ordered structures with preferred molecular orientations and stacking configurations that circumvent the strict lattice-matching requirements in traditional epitaxial growth. Lastly, we briefly discuss representative applications of graphene-based heterostructures in electronic and optoelectronics.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Rapid preparation of TiO2-SiO2 heterostructure photonic crystal in the near-infrared region via a modified electrophoresis-assisted self-assembly process

Highlights: • TiO{sub 2}-SiO{sub 2} heterostructure photonic crystal was rapidly fabricated. • The voltage played an important role in the electrophoresis-assisted self-assembly. • The photonic band gap of photonic crystal was in the near-infrared region. • The drawing process can accelerate the speed of self-assembling. - Abstract: TiO{sub 2}-SiO{sub 2} heterostructure photonic crystal was rapidly fabricated by a modified electrophoresis-assisted self-assembly process. The effect of voltage on preparation and properties of TiO{sub 2}-SiO{sub 2} heterostructure photonic crystal was discussed. The results of the tests show that TiO{sub 2}-SiO{sub 2} heterostructure photonic crystal with different structures can be rapidly fabricated by controlling the voltage. With the increase of voltage, the TiO{sub 2}-SiO{sub 2} heterostructure photonic crystal is more likely to form an ordered hexagonal array and shows a more bright and uniform color. Meanwhile, the central wavelength of the photonic band gap will be blue shifted in the near-infrared region.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2018

Self-assembled hierarchical Sn3O4-multi-wall carbon nanotubes: Facile fabrication, promoted charge separation, and enhanced photocatalytic performances

Highlights: • Controlled self-assembly of Sn{sub 3}O{sub 4} nanoflakes over CNTs was achieved. • The SO-CNT-4 hybrid exhibits the best activity under visible light. • Promoted charge separation efficiency lead to the activity enhancement. - Abstract: Controlled assembling of Sn{sub 3}O{sub 4} nanoflakes over multi-wall carbon nanotubes (CNTs) was achieved for the first time by using a facile hydrothermal method. The SEM and TEM images showed that numerous Sn{sub 3}O{sub 4} nanoflakes were widely assembled over the surface of CNTs. In these hybrids, the CNTs served as dispersing-template could reduce the agglomeration of Sn{sub 3}O{sub 4} nanoflakes, as well as facilitate the interfacial charge transfer because of its high electrical conductivity. The Sn{sub 3}O{sub 4}-CNTs photocatalysts have exhibited remarkably promoted performances in decomposing organic contaminant under visible or solar light. The Sn{sub 3}O{sub 4}-CNTs hybrid with CNTs mass ratio of 4.37% exhibited the best activity under visible light, while that with CNTs mass ratio of 1.41% was more efficient when irradiated by solar light, the activity of which was about 3.47 times higher than that of pristine Sn{sub 3}O{sub 4} under identical conditions. Controlled experiments proved that O{sub 2}{sup −} and h{sup +} played the chief role in decomposing organic pollutants.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2018

Size controlled synthesis of SnO2 and its electrostatic self- assembly over reduced graphene oxide for photocatalyst and supercapacitor application

Highlights: • The influence of pH, reaction time and temperature over the control of size of the spheres of SnO{sub 2} by hydrothermal method and further assembly over reduced graphene oxide has been carried out in this report. • The modification of SnO{sub 2} via (3- amino propyl triethoxysilane) makes the electrostatic self- assembly between the positively charged SnO{sub 2} nanostructure and the negatively charged graphene oxide (GO). • The impacts of concentration of GO added to SnO{sub 2} nanostructures and its significance on the morphology and the capacitive property of SnO{sub 2}/rGO composite are evaluated. • The functionalization of graphene enhances the capacitance as well as provides anchoring sites for the decoration by metal oxide nanostructures. - Abstract: Hydrothermally-synthesized, size and shape-controlled SnO{sub 2} nanospheres were electrostatically self-assembled over the surface of reduced graphene oxide (rGO). The control over decoration of SnO{sub 2} nanospheres on rGO was studied by microscopic analysis and the crystallographic structure of SnO{sub 2} hybrid nanocomposites (SnO{sub 2}: rGO) was determined from X-Ray diffraction analysis (XRD). Hybrid nanocomposite in 1:3 ratio exhibited (i) excellent methylene blue degradation capability within 3 min under visible light condition and (ii) high specific capacitance of 337.52 F/g at 0.5 A/g in 1 M H{sub 2}SO{sub 4} electrolyte with 89% of retention after 5000 cycles.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2024

Ionic liquid mediated one-step perpendicular assembly in block copolymer thin films for ultrafiltration membrane applications

The rapid rise of oil and gas, petrochemical, food processing, and pharmaceutical industries has added a complex mixture of contaminants like oil, particulates, metals, and other organic compounds to wastewater. Multipurpose membranes with precise pore structure can offer a solution to this problem and block copolymers (BCP) can be used to achieve such structures. Achieving vertical assembly of BCP domains provides a perfect template for developing uniform through film channels for separation and transport of material, besides being useful for the rectification of defects in photolithography patterns. Producing such morphologies may require extensive film/substrate processing and is not always feasible for scale-up. With this article, we demonstrate a facile solution casting method to induce vertical domain assembly in as-cast diblock copolymer thin films in the presence of an ionic liquid (IL) additive that preferentially segregates to one block and neutralizes interfacial interactions. We also show the tunability of domain sizes by controlling the additive concentration. These vertically aligned morphologies are important for the development of next-generation lithographic techniques and form excellent templates for ultrafiltration membranes with uniform pore sizes. In conclusion, this article demonstrates how IL additives can be used to obtain stable non-equilibrium morphologies in as-cast BCP films and the effect of BCP molecular mass, block volume fractions, and IL content on self-assembly.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Electrostatically assembled open square and checkerboard superlattices

Programmable assembly of nanoparticles into structures other than two-dimensional hexagonal lattices remains challenging. Assembling an open checkerboard or square lattice is harder to achieve compared to a close-packed hexagonal structure. Here, in this study, we introduce a unified, robust approach to assemble nanoparticles into a diverse family of two-dimensional superlattices at the liquid–air interface. Gold nanoparticles are grafted with pH-responsive, water-soluble poly(ethylene glycol) chains terminating in single bondCOOH or -NH 2 end groups, enabling control over interparticle Coloumbic interactions, while the molecular weight of grafted polymer dictates its conformation. This combined control of charges and conformation enables crystallization into checkerboard, simple-square, and body-centered honeycomb superlattices. Furthermore, tuning the pH induces structural transitions between different lattice types. This approach opens new avenues for the fabrication of colloidal superstructures with tailored architectures.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Protocol for assembling and operating bipolar membrane water electrolyzers

Renewable energy-driven bipolar membrane water electrolyzers (BPMWEs) are a promising technology for sustainable production of hydrogen from seawater and other impure water sources. Here, we present a protocol for assembling BPMWEs and operating them in a range of water feedstocks, including ultra-pure deionized water and seawater. We describe steps for membrane electrode assembly preparation, electrolyzer assembly, and electrochemical evaluation. For complete details on the use and execution of this protocol, please refer to Marin et al. (2023).

Rios Amador, Isabela↗
DOE OSTI2017

The Crystal Structure of a Maxi/Mini-Ferritin Chimera Reveals Guiding Principles for the Assembly of Protein Cages

Cage proteins assemble into nanoscale structures with large central cavities. They play roles, including those as virus capsids and chaperones, and have been applied to drug delivery and nanomaterials. Furthermore, protein cages have been used as model systems to understand and design protein quaternary structure. Ferritins are ubiquitous protein cages that manage iron homeostasis and oxidative damage. Two ferritin subfamilies have strongly similar tertiary structure yet distinct quaternary structure: maxi-ferritins normally assemble into 24-meric, octahedral cages with C-terminal E-helices centered around 4-fold symmetry axes, and mini-ferritins are 12-meric, tetrahedral cages with 3-fold axes defined by C-termini lacking E-domains. To understand the role E-domains play in ferritin quaternary structure, we previously designed a chimera of a maxi-ferritin E-domain fused to the C-terminus of a mini-ferritin. The chimera is a 12-mer cage midway in size between those of the maxi- and mini-ferritin. The research described herein sets out to understand (a) whether the increase in size over a typical mini-ferritin is due to a frozen state where the E-domain is flipped out of the cage and (b) whether the symmetrical preference of the E-domain in the maxi-ferritin (4-fold axis) overrules the C-terminal preference in the mini-ferritin (3-fold axis). With a 1.99 Å resolution crystal structure, we determined that the chimera assembles into a tetrahedral cage that can be nearly superimposed with the parent mini-ferritin, and that the E-domains are flipped external to the cage at the 3-fold symmetry axes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Access to Advanced Functional Materials through Postmodification of Biomimetic Assemblies via Click Chemistry

The design, synthesis, and fabrication of functional nanomaterials with specific properties remain a long-standing goal for many scientific fields. The self-assembly of sequence-defined biomimetic synthetic polymers presents a fundamental strategy to explore the chemical space beyond biological systems to create advanced nanomaterials. Moreover, subsequent chemical modification of existing nanostructures is a unique approach for accessing increasingly complex nanostructures and introducing functionalities. Of these modifications, covalent conjugation chemistries, such as the click reactions, have been the cornerstone for chemists and materials scientists. Herein, we highlight some recent advances that have successfully employed click chemistries for the postmodification of assembled one-dimensional (1D) and two-dimensional (2D) nanostructures to achieve applications in molecular recognition, mineralization, and optoelectronics. Specifically, biomimetic nanomaterials assembled from sequence-defined macromolecules such as peptides and peptoids are described.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

An RNA Aptamer Capable of Forming a Hydrogel by Self-Assembly

Hydrogels are supramolecular assemblies with both solute transport properties like liquids and mechanical properties like elastomers. To date, every type of biomolecules except ribonucleic acid (RNA), is capable of forming a hydrogel. Here, we report an RNA that forms a hydrogel by self-assembly. This RNA is originally identified by systematic evolution of ligands by exponential enrichment (SELEX) to enhance the activity of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors as a potential RNA drug for the treatment of cognitive disorders. The RNA hydrogel exhibits an elastic modulus plateau on the order of 102 Pa and shows dynamic RNA chain interactions with relaxation behaviors similar to living wormlike micellar solutions. Small-angle X-ray scattering and cryogenic electron microscopy characterization support the RNA network structures. Here, by sequence mutation and rheological measurements, we reveal two key sequence motifs in the RNA responsible for intermolecular recognition and the formation of a polymer network by self-assembly.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Predicting Protein–Polymer Block Copolymer Self-Assembly from Protein Properties

Protein–polymer bioconjugate self-assembly has attracted a great deal of attention as a method to fabricate protein nanomaterials in solution and the solid state. To identify protein properties that affect phase behavior in protein–polymer block copolymers, a library of 15 unique protein- b -poly(N-isopropylacrylamide) (PNIPAM) copolymers comprising 11 different proteins was compiled and analyzed. Many attributes of phase behavior are found to be similar among all studied bioconjugates regardless of protein properties, such as formation of micellar phases at high temperature and low concentration, lamellar ordering with increasing temperature, and disordering at high concentration, but several key protein-dependent trends are also observed. In particular, hexagonal phases are only observed for proteins within the molar mass range 20–36 kDa, where ordering quality is also significantly enhanced. While ordering is generally found to improve with increasing molecular weight outside of this range, most large bioconjugates exhibited weaker than predicted assembly, which is attributed to chain entanglement with increasing polymer molecular weight. Additionally, order–disorder transition boundaries are found to be largely uncorrelated to protein size and quality of ordering. However, the primary finding is that bioconjugate ordering can be accurately predicted using only protein molecular weight and percentage of residues contained within β sheets. This model provides a basis for designing protein–PNIPAM bioconjugates that exhibit well-defined self-assembly and a modeling framework that can generalize to other bioconjugate chemistries.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Influence of Terminal Carboxyl Groups on the Structure and Reactivity of Functionalized m-Carboranethiolate Self-Assembled Monolayers

The structure and function of self-assembled monolayers (SAMs) at the nanoscale are determined by the steric and electronic effects of their building blocks. Carboranethiol molecules form pristine monolayers that provide tunable two-dimensional systems to probe lateral and interfacial interactions. Additional ω-functionality, such as carboxyl groups, can be introduced to change the properties of the exposed surfaces. Here, two geometrically similar isomeric m-carborane analogues of m-mercaptobenzoic acid, 1-COOH-7-SH-1,7-C 2 B 10 H 10 and racem-1-COOH-9-SH-1,7-C 2 B 10 H 10 , are characterized and their SAMs on Au{111} are examined. The latter isomer belongs to the rare group of chiral cage molecules and becomes, to our knowledge, the first example assembled on Au{111}. Although different in symmetry, molecules of both isomers assemble into similar hexagonal surface patterns. The nearest-neighbor spacing of 8.4 ± 0.4 Å is larger than that of non-carboxylated isomers, consistent with the increased steric demands of the carboxyl groups. Computational modeling reproduced this spacing and suggests a tilt relative to the surface normal. However, tilt domains are not observed experimentally, suggesting the presence of strong lateral interactions. Analyses of the influence of the functional groups through the pseudo-aromatic m-carborane skeleton showed that the thiol group attached to either carbon or boron atoms increases the carboxyl group acidity in solution. In contrast, the acidity of the exposed carboxyl group in the SAMs decreases upon surface attachment; computational analyses suggest that the driving force of this shift is the dielectric of the environment in the monolayer as a result of confined intermolecular interactions, proximity to the Au surface, and partial desolvation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

LAN: A Materials Notation for Two-Dimensional Layered Assemblies

Two-dimensional (2D) layered materials offer intriguing possibilities for novel physics and applications. Before any attempt at exploring the materials space in a systematic fashion, or combining insights from theory, computation, and experiment, a formal description of information about an assembly of arbitrary composition is required. Here, we introduce a domain-generic notation that is used to describe the space of 2D layered materials from monolayers to twisted assemblies of arbitrary composition, existent or not yet fabricated. The notation corresponds to a theoretical materials concept of stepwise assembly of layered structures using a sequence of rotation, vertical stacking, and other operations on individual 2D layers. Its scope is demonstrated with several example structures using common single-layer materials as building blocks. This work overall aims to contribute to the systematic codification, capture, and transfer of materials knowledge in the area of 2D layered materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Self-Assembly of a Linear Alkylamine Bilayer around a Cu Nanocrystal: Molecular Dynamics

Copper nanocrystals are often grown with the help of alkylamine capping agents, which direct the nanocrystal shape. However, the role of these molecules is still unclear. We characterized the assembly of aqueous tetradecylamine (TDA) around a Cu nanocrystal and found that TDA exhibits a temperature-dependent bilayer structure. The bilayer involves an inner layer, in which TDA binds to Cu via the amine group and tends to orient the alkyl tail perpendicular to the surface, and an outer layer whose structure depends on temperature. At low temperatures, alkylamines in the inner layer form bundles with no apparent relation to the crystal facets. Alkylamines in the outer layer tend to orient their long axes perpendicular to the Cu surfaces, with interdigitation into the inner layer. At high temperatures, alkylamines in the inner layer lose their bundle structure, and outer-layer alkylamines tend to orient themselves tangential to the Cu surfaces, forming a “web” above inner-layer TDA. TDA exhibits a rapid interlayer exchange at typical synthesis temperatures, consistent with experiment. Here, the variety in the assemblies seen here and in other studies of alkanethiols around gold nanocrystals indicates a richness in the assemblies that can be achieved by modulating the interaction between the strongly binding end group and the surface.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2022

Ion Pairing and Molecular Orientation at Liquid/Liquid Interfaces: Self-Assembly and Function

We report that molecular orientation plays a pivotal role in defining the functionality and chemistry of interfaces, yet accurate measurements probing this important feature are few, due, in part, to technical and analytical limitations in extracting information from molecular monolayers. For example, buried liquid/liquid interfaces, where a complex and poorly understood balance of inter- and intramolecular interactions impart structural constraints that facilitate the formation of supramolecular assemblies capable of new functions, are difficult to probe experimentally. Here, we use vibrational sum-frequency generation spectroscopy, numerical polarization analysis, and atomistic molecular dynamics simulations to probe molecular orientations at buried oil/aqueous interfaces decorated with amphiphilic oligomers. We show that the orientation of self-assembled oligomers changes upon the addition of salts in the aqueous phase. The evolution of these structures can be described by competitive ion effects in the aqueous phase altering the orientations of the tails extending into the oil phase. These specific anionic effects occur via interfacial ion pairing and associated changes in interfacial solvation and hydrogen-bonding networks. These findings provide more quantitative insight into orientational changes encountered during self-assembly and pave the way for the design of functional interfaces for chemical separations, neuromorphic computing applications, and related biomimetic systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Coupling of Charge Regulation and Geometry in Soft Ionizable Molecular Assemblies

The size, shape, and charge of structures, such as proteins and amphiphile assemblies, respond in an interconnected manner to solution ionic conditions. Here, we analyze assemblies of an amphiphile (C 16 K 2 ), with two ionizable amino acids [lysine (K)] coupled to a 16-carbon alkyl tail, via small-angle X-ray scattering (SAXS), nonlinear Poisson–Boltzmann theory (nl-PB), and hybrid Monte Carlo-molecular dynamics (MC-MD) simulations. SAXS revealed structural transitions from spherical micelles to cylindrical micelles to bilayers with increasing pH. By combining SAXS-determined structural information and nl-PB, we derived the molecular degree of ionization as a function of pH. The back-calculated titration curves matched the experimental data over an extended pH range, without adjustable parameters. Similarly, the SAXS data on the evolution of spherical micelle structure with ionic strength were combined with nl-PB and MC-MD to derive the bare and effective charges. MC-MD, which considered finite ion sizes, showed that bare and effective charges saturate quickly with increasing salt concentration. Furthermore, the calculated effective charges closely matched results from Zeta-potential measurements. The presented approach has advantages over customary methods for charge regulation, such as the Henderson–Hasselbalch (HH) or Hill models, where molecular ionization/deionization in assemblies is described by effective pKs that are distinct from the pK for isolated molecules. However, these models lack a physical explanation for these pK shifts. By contrast, our approach of combining structural details with an electrostatic model and simulations provides a more intuitive understanding of structure-charge coupling and a framework for understanding charge regulation in many synthetic and biological systems.

ionization↗
DOE OSTI2020

Probing Self-Assembly in Arginine–Oleic Acid Solutions with Terahertz Spectroscopy and X-ray Scattering

A study of the formation of microstructures in the reaction of oleic acid with arginine elucidates dynamical self-assembly processes at the molecular level. Terahertz spectroscopy combined with density functional calculations reveals the initial hydrogen-bonding motifs in the assembly process, leading to the formation of micelles and vesicles. Small-angle X-ray scattering measurements allow for kinetic analysis of the growth processes of these nanostructures, revealing a prenucleation pathway of vesicles and micelles which lead to spongelike structures. This final stage of the assembly into spongelike aggregates is investigated with optical microscopy. The formed structures only occur at pH > 8 and are resistant to extreme acidic and basic conditions. Here, a mechanistic pathway to the formation of the spongelike aggregates is described.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗