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At least 973 records · Page 54

Palm: Easing the Burden of Analytical Performance Modeling

Analytical (predictive) application performance models are critical for diagnosing performance-limiting resources, optimizing systems, and designing machines. Creating models, however, is difficult because they must be both accurate and concise. To ease the burden of performance modeling, we developed Palm, a modeling tool that combines top-down (human-provided) semantic insight with bottom-up static and dynamic analysis. To express insight, Palm defines a source code modeling annotation language. By coordinating models and source code, Palm's models are `first-class' and reproducible. Unlike prior work, Palm formally links models, functions, and measurements. As a result, Palm (a) uses functions to either abstract or express complexity (b) generates hierarchical models (representing an application's static and dynamic structure); and (c) automatically incorporates measurements to focus attention, represent constant behavior, and validate models. We discuss generating models for three different applications.

annotation languages↗

Performance and Architecture Lab Modeling Tool

Analytical application performance models are critical for diagnosing performance-limiting resources, optimizing systems, and designing machines. Creating models, however, is difficult. Furthermore, models are frequently expressed in forms that are hard to distribute and validate. The Performance and Architecture Lab Modeling tool, or Palm, is a modeling tool designed to make application modeling easier. Palm provides a source code modeling annotation language. Not only does the modeling language divide the modeling task into sub problems, it formally links an application's source code with its model. This link is important because a model's purpose is to capture application behavior. Furthermore, this link makes it possible to define rules for generating models according to source code organization. Palm generates hierarchical models according to well-defined rules. Given an application, a set of annotations, and a representative execution environment, Palm will generate the same model. A generated model is a an executable program whose constituent parts directly correspond to the modeled application. Palm generates models by combining top-down (human-provided) semantic insight with bottom-up static and dynamic analysis. A model's hierarchy is defined by static and dynamic source code structure. Because Palm coordinates models and source code, Palm's models are 'first-class' and reproducible. Palm automates common modeling tasks. For instance, Palm incorporates measurements to focus attention, represent constant behavior, and validate models. Palm's workflow is as follows. The workflow's input is source code annotated with Palm modeling annotations. The most important annotation models an instance of a block of code. Given annotated source code, the Palm Compiler produces executables and the Palm Monitor collects a representative performance profile. The Palm Generator synthesizes a model based on the static and dynamic mapping of annotations to program behavior. The model -- an executable program -- is a hierarchical composition of annotation functions, synthesized functions, statistics for runtime values, and performance measurements.

Tallent, Nathan↗

Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools

Background: MicroRNAs (miRNAs) are noncoding RNAs that direct post-transcriptional regulation of protein coding genes. Recent studies have shown miRNAs are important for controlling many biological processes, including nervous system development, and are highly conserved across species. Given their importance, computational tools are necessary for analysis, interpretation and integration of high-throughput (HTP) miRNA data in an increasing number of model species. The Bioinformatics Resource Manager (BRM) v2.3 is a software environment for data management, mining, integration and functional annotation of HTP biological data. In this study, we report recent updates to BRM for miRNA data analysis and cross-species comparisons across datasets. Results: BRM v2.3 has the capability to query predicted miRNA targets from multiple databases, retrieve potential regulatory miRNAs for known genes, integrate experimentally derived miRNA and mRNA datasets, perform ortholog mapping across species, and retrieve annotation and cross-reference identifiers for an expanded number of species. Here we use BRM to show that developmental exposure of zebrafish to 30 uM nicotine from 6–48 hours post fertilization (hpf) results in behavioral hyperactivity in larval zebrafish and alteration of putative miRNA gene targets in whole embryos at developmental stages that encompass early neurogenesis. We show typical workflows for using BRM to integrate experimental zebrafish miRNA and mRNA microarray datasets with example retrievals for zebrafish, including pathway annotation and mapping to human ortholog. Functional analysis of differentially regulated (p<0.05) gene targets in BRM indicates that nicotine exposure disrupts genes involved in neurogenesis, possibly through misregulation of nicotine-sensitive miRNAs. Conclusions: BRM provides the ability to mine complex data for identification of candidate miRNAs or pathways that drive phenotypic outcome and, therefore, is a useful hypothesis generation tool for systems biology. The miRNA workflow in BRM allows for efficient processing of multiple miRNA and mRNA datasets in a single software environment with the added capability to interact with public data sources and visual analytic tools for HTP data analysis at a systems level. BRM is developed using Java™ and other open-source technologies for free distribution (http://www.sysbio.org/dataresources/brm.stm).

59 BASIC BIOLOGICAL SCIENCES↗

STFM: Accurate Spatio-Temporal Fusion Model for Weather Forecasting

Meteorological prediction is crucial for various sectors, including agriculture, navigation, daily life, disaster prevention, and scientific research. However, traditional numerical weather prediction (NWP) models are constrained by their high computational resource requirements, while the accuracy of deep learning models remains suboptimal. In response to these challenges, we propose a novel deep learning-based model, the Spatiotemporal Fusion Model (STFM), designed to enhance the accuracy of meteorological predictions. Our model leverages Fifth-Generation ECMWF Reanalysis (ERA5) data and introduces two key components: a spatiotemporal encoder module and a spatiotemporal fusion module. The spatiotemporal encoder integrates the strengths of convolutional neural networks (CNNs) and recurrent neural networks (RNNs), effectively capturing both spatial and temporal dependencies. Meanwhile, the spatiotemporal fusion module employs a dual attention mechanism, decomposing spatial attention into global static attention and channel dynamic attention. This approach ensures comprehensive extraction of spatial features from meteorological data. The combination of these modules significantly improves prediction performance. Experimental results demonstrate that STFM excels in extracting spatiotemporal features from reanalysis data, yielding predictions that closely align with observed values. In comparative studies, STFM outperformed other models, achieving a 7% improvement in ground and high-altitude temperature predictions, a 5% enhancement in the prediction of the u/v components of 10 m wind speed, and an increase in the accuracy of potential height and relative humidity predictions by 3% and 1%, respectively. This enhanced performance highlights STFM’s potential to advance the accuracy and reliability of meteorological forecasting.

54 ENVIRONMENTAL SCIENCES↗

Data-Informed Synthetic Networks of Water Distribution Systems for Resilience Analysis in Puerto Rico

The increasing potential of infrastructure disruptions calls for high-quality infrastructure models to be used in resilience analysis and decision making. Unfortunately, many utilities and communities do not have access to accurate and detailed models due to a lack of data and resources. Furthermore, security restrictions on sharing infrastructure models present roadblocks to research, analysis, and decision making. Recent advances in the development of synthetic water distribution models provide a potential solution to this problem. There is an opportunity to improve these methods by leveraging incomplete pipe datasets to aid synthetic network generation. To address this gap, we developed a methodology for synthetic network generation that incorporates partial pipe data using a modification of the minimum cost flow algorithm for network generation and pipe sizing. This methodology demonstrates how partial pipe data can be leveraged to improve site-specific synthetic network generation. For the study area of Mayagüez, Puerto Rico, a synthetic model generated using 50% of real pipe data matches the pressure of the validation system with an average error of 23.5 m of head, which improves upon the average error of 31.6 m of head produced by a synthetic model generated using no data of the real pipes. Additionally, synthetic networks are shown to replicate the pressure response under a disruption scenario of the validation network, suggesting potential use in resilience analysis.

resilience analysis↗

Picking the Best from the All-Resources Menu: Advanced Tools for Resource Planning

Introduces the wide range of electric power systems modeling types and associated questions they can help answer. The presentation focusses on modeling needs for high levels of Distributed Energy Resources (DERs), renewables, and inverter-based technologies as alternatives to traditional centralized power systems. Covers Dynamics, Production Cost/QSTS, Metric Assessment, Resource Planning, and Integrated Simulations with examples drawn from NREL's past and on-going projects. Presented at the McKnight Foundation workshop on 'An All-Resources Approach to Planning for a More Dynamic, Low-Carbon Grid' exploring grid modernization options to replace retiring coal plants in Minnesota.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A Participation Factor-Based Approach for Defining the EMT Model Boundary for Power System Simulations with Inverter-Based Resources

The increasing penetration of inverter-based resources (IBRs) introduces new challenges to power system simulations, particularly with the emergence of fast electromagnetic transient (EMT) dynamics and sub-synchronous oscillations (SSO) that require time-consuming EMT simulations. To reduce the time cost for simulating a large-scale power grid with IBRs, this paper proposes a novel participation factor-based approach for defining a critical zone for detailed EMT modeling and simulations, which includes the IBRs, synchronous generators, and the network components participating significantly in simulated contingencies. Both model-based and response-based methods are introduced for the estimation of participation factors (PFs). The case study on the 240-bus Western Electricity Coordinating Council (WECC) system demonstrates that the EMT zone determined by the proposed approach can effectively capture power system dynamics involving IBRs.

EMT simulation↗

JIGSAW: Preference-directed, co-operative scheduling

Techniques that enable humans and machines to cooperate in the solution of complex scheduling problems have evolved out of work on the daily allocation and scheduling of Tactical Air Force resources. A generalized, formal model of these applied techniques is being developed. It is called JIGSAW by analogy with the multi-agent, constructive process used when solving jigsaw puzzles. JIGSAW begins from this analogy and extends it by propagating local preferences into global statistics that dynamically influence the value and variable ordering decisions. The statistical projections also apply to abstract resources and time periods--allowing more opportunities to find a successful variable ordering by reserving abstract resources and deferring the choice of a specific resource or time period.

Linden, Theodore A.↗

From documentation to prediction: Raising the bar for thermokarst research

Here we report that to date the majority of published research on thermokarst has been directed at documenting its form, occurrence, and rates of occurrence. The fundamental processes driving thermokarst have long been largely understood. However, the detailed physical couplings between, water, air, soil, and the thermal dynamics governing freeze-thaw and soil mechanics is less understood and not captured in models aimed at predicting the response of frozen soils to warming and thaw. As computational resources increase more sophisticated mechanistic models can be applied; these show great promise as predictive tools. These models will be capable of simulating the response of soil deformation to thawing/freezing cycles and the long-term, non-recoverable response of the land surface to the loss of ice. At the same time, advances in remote sensing of permafrost environments also show promise in providing detailed and spatially extensive estimates in the rates and patterns of subsidence. These datasets provide key constraints to calibrate and evaluate the predictive power of mechanistic models. In conclusion, in the coming decade, these emerging technologies will greatly increase our ability to predict when, where, and how thermokarst will occur in a changing climate.

54 ENVIRONMENTAL SCIENCES↗

An integrated environmental and health performance quantification model for pre-occupancy phase of buildings in China

To comprehensively pre-evaluate the damages to both the environment and human health due to construction activities in China, this paper presents an integrated building environmental and health performance (EHP) assessment model based on the Building Environmental Performance Analysis System (BEPAS) and the Building Health Impact Analysis System (BHIAS) models and offers a new inventory data estimation method. The new model follows the life cycle assessment (LCA) framework and the inventory analysis step involves bill of quantity (BOQ) data collection, consumption data formation, and environmental profile transformation. The consumption data are derived from engineering drawings and quotas to conduct the assessment before construction for pre-evaluation. The new model classifies building impacts into three safeguard areas: ecosystems, natural resources and human health. Thus, this model considers environmental impacts as well as damage to human wellbeing. The monetization approach, distance-to-target method and panel method are considered as optional weighting approaches. Finally, nine residential buildings of different structural types are taken as case studies to test the operability of the integrated model through application. The results indicate that the new model can effectively pre-evaluate building EHP and the structure type significantly affects the performance of residential buildings.

54 ENVIRONMENTAL SCIENCES↗

Connections Between Mean North Pacific Circulation and Western US Precipitation Extremes in a Warming Climate

Abstract Extreme precipitation has widespread impacts over the western US (WUS), which are expected to be exacerbated in the future given thermodynamically driven increases in atmospheric moisture and shifts in atmospheric circulation patterns. However, internal climate variability complicates how these factors affect future projections of precipitation changes. In this study, we investigate late 21st‐century changes in mean‐state responses over the North Pacific Ocean and associated WUS precipitation extremes using the Multi‐Model Large Ensemble Archive, which is a recent and valuable resource to disentangle the effects of model structural differences from internal variability. We found that inter‐model differences in precipitation extremes over the WUS are large: from south to north (here, from California to Washington), models show different levels of increases for both the frequency and intensity of heavy precipitation. In general, the Pacific Northwest sees a more consistent signal than California. We show that wet‐season mean circulation influences extreme precipitation, by using a decomposition of the relative contributions of thermodynamic (atmospheric humidity) and dynamic (large‐scale circulation) driven changes. The thermodynamic contribution dominates, however, the dynamic contribution varies with latitude and differs substantially between model ensembles. Inter‐model differences affect the spread in not only the magnitude, but also the sign of the dynamic contribution. This implies that mean circulation changes contribute to uncertainty in quantifying the regional structure of concentrated moisture flux and future extreme events. This result highlights the need to more accurately constrain projected North Pacific coupled circulation changes to narrow the spread in projections of future precipitation extremes.

54 ENVIRONMENTAL SCIENCES↗

Integration of Russian Tier-1 Grid Center with High Performance Computers at NRC-KI for LHC experiments and beyond HENP

The LHC experiments are preparing for the precision measurements and further discoveries that will be made possible by higher LHC energies from April 2015 (LHC Run2). The need for simulation, data processing and analysis would overwhelm the expected capacity of grid infrastructure computing facilities deployed by the Worldwide LHC Computing Grid (WLCG). To meet this challenge the integration of the opportunistic resources into LHC computing model is highly important. The Tier-1 facility at Kurchatov Institute (NRC-KI) in Moscow is a part of WLCG and it will process, simulate and store up to 10% of total data obtained from ALICE, ATLAS and LHCb experiments. In addition Kurchatov Institute has supercomputers with peak performance 0.12 PFLOPS. The delegation of even a fraction of supercomputing resources to the LHC Computing will notably increase total capacity. In 2014 the development a portal combining a Tier-1 and a supercomputer in Kurchatov Institute was started to provide common interfaces and storage. The portal will be used not only for HENP experiments, but also by other data- and compute-intensive sciences like biology with genome sequencing analysis; astrophysics with cosmic rays analysis, antimatter and dark matter search, etc.

97 MATHEMATICS AND COMPUTING↗

Development and Documentation of kL-Based Linear, Nonlinear, and Full Reynolds Stress Turbulence Models

The development and implementation of kL-based Reynolds Average Navier-Stokes (RANS) turbulence models are reported herein. The kL is based on Abdol-Hamid's closure and Menter's modi cation to Rotta's two-equation model. Rotta shows that a reliable transport equation can be formed from the turbulent length scale L, and the turbulent kinetic energy k. Rotta's kL equation is well suited for term-by-term modeling and displays useful features compared to other scale formulation. One of the important di erences is the inclusion of higher order velocity derivatives in the source terms of the scale equation. This can enhance the ability of RANS solvers to simulate unsteady ows in URANS mode. The present report documents the formulation of three model levels of turbulence models as implemented in the CFD code FUN3D. Methodology and calibration examples are shown in detail. The levels are the linear k-kL and the two-equation algebraic Reynolds stress model (ARSM) as well as the full Reynolds Stress Model (RSM). Attached, separated and corner ow cases are documented and compared with experimental, theoretical and other turbulence model data. The results show generally very good comparisons with canonical and experimental data. The results from this formulation are similar or better than results using the SST two- equation turbulence model. ARSM shows great promise with similar level of computational resources as general two equation turbulence models.

Abdol-Hamid, Khaled S.↗

Fidelity Analysis of Complex Large-Scale Simulation Models of PEs (MARS) in Future Power Grids

With the proliferation of power electronic (PE)-based resources in the electric grid, there have been numerous different kinds of simulation models developed and studied to understand their dynamic behavior. Study of PE-based resources using each simulation model has its own distinct advantages and disadvantages. Therefore it is very important to carefully select the appropriate model for the evaluation of the PE-based resources. In this paper, one such effort is made to analyze the different types of models in the case of a multi-port autonomous reconfigurable solar power plant (MARS). The MARS integrates a hybrid photovoltaic (PV)-energy storage system (ESS) plant to high-voltage direct current (HVdc) system and transmission alternating current (ac) grid. The dynamic models are evaluated under different test cases varying the short-circuit ratio (SCR) and control algorithms. Recommendations are provided on the equipment study needs based on the analysis completed.

Marthi, Phani Ratna Vanamali↗

A seamless approach for evaluating climate models across spatial scales

In regions of the world where topography varies significantly with distance, most global climate models (GCMs) have spatial resolutions that are too coarse to accurately simulate key meteorological variables that are influenced by topography, such as clouds, precipitation, and surface temperatures. One approach to tackle this challenge is to run climate models of sufficiently high resolution in those topographically complex regions such as the North American Regionally Refined Model (NARRM) subset of the Department of Energy’s (DOE) Energy Exascale Earth System Model version 2 (E3SM v2). Although high-resolution simulations are expected to provide unprecedented details of atmospheric processes, running models at such high resolutions remains computationally expensive compared to lower-resolution models such as the E3SM Low Resolution (LR). Moreover, because regionally refined and high-resolution GCMs are relatively new, there are a limited number of observational datasets and frameworks available for evaluating climate models with regionally varying spatial resolutions. As such, we developed a new framework to quantify the added value of high spatial resolution in simulating precipitation over the contiguous United States (CONUS). To determine its viability, we applied the framework to two model simulations and an observational dataset. We first remapped all the data into Hierarchical Equal-Area Iso-Latitude Pixelization (HEALPix) pixels. HEALPix offers several mathematical properties that enable seamless evaluation of climate models across different spatial resolutions including its equal-area and partitioning properties. The remapped HEALPix-based data are used to show how the spatial variability of both observed and simulated precipitation changes with resolution increases. This study provides valuable insights into the requirements for achieving accurate simulations of precipitation patterns over the CONUS. It highlights the importance of allocating sufficient computational resources to run climate models at higher temporal and spatial resolutions to capture spatial patterns effectively. Furthermore, the study demonstrates the effectiveness of the HEALPix framework in evaluating precipitation simulations across different spatial resolutions. This framework offers a viable approach for comparing observed and simulated data when dealing with datasets of varying spatial resolutions. By employing this framework, researchers can extend its usage to other climate variables, datasets, and disciplines that require comparing datasets with different spatial resolutions.

54 ENVIRONMENTAL SCIENCES↗

Earth Survey Applications Division

Accomplishments of research and data analysis conducted to study physical parameters and processes inside the Earth and on the Earth's surface, to define techniques and systems for remotely sensing the processes and measuring the parameters of scientific and applications interest, and the transfer of promising operational applications techniques to the user community of Earth resources monitors, managers, and decision makers are described. Research areas covered include: geobotany, magnetic field modeling, crustal studies, crustal dynamics, sea surface topography, land resources, remote sensing of vegetation and soils, and hydrological sciences. Major accomplishments include: production of global maps of magnetic anomalies using Magsat data; computation of the global mean sea surface using GEOS-3 and Seasat altimetry data; delineation of the effects of topography on the interpretation of remotely-sensed data; application of snowmelt runoff models to water resources management; and mapping of snow depth over wheat growing areas using Nimbus microwave data.

Carpenter, L.↗

Operations planning for Space Station Freedom - And beyond

The potential of automated planning and electronic execution systems for enhancing operations on board Space Station Freedom (SSF) are discussed. To exploit this potential the Operations Planning and Scheduling Subsystem is being developed at the NASA Johnson Space Center. Such systems may also make valuable contributions to the operation of resource-constrained, long-duration space habitats of the future. Points that should be considered during the design of future long-duration manned space missions are discussed. Early development of a detailed operations concept as an end-to-end mission description offers a basis for iterative design evaluation, refinement, and option comparison, particularly when used with an advanced operations planning system capable of modeling the operations and resource constraints of the proposed designs.

Gibson, Stephen S.↗

National Geothermal Data System: Interactive Assessment of Geothermal Energy Potential in the U.S.

Geothermal-relevant geosciences data from all 50 states (www.stategeothermaldata.org), federal agencies, national labs, and academic centers are being digitized and linked in a distributed online network via the U.S. Department of Energy-funded National Geothermal Data System (NGDS) to foster geothermal energy exploration and development through use of interactive online ‘mashups,’data integration, and applications. Emphasis is first to make as much information as possible accessible online, with a long range goal to make data interoperable through standardized services and interchange formats. An initial set of thirty geoscience data content models is in use or under development to define a standardized interchange format: aqueous chemistry, borehole temperature data, direct use feature, drill stem test, earthquake hypocenter, fault feature, geologic contact feature, geologic unit feature, thermal/hot spring description, metadata, quaternary fault, volcanic vent description, well header feature, borehole lithology log, crustal stress, gravity, heat flow/temperature gradient, permeability, and feature descriptions data like developed geothermal systems, geologic unit geothermal properties, permeability, production data, rock alteration description, rock chemistry, and thermal conductivity. Map services are also being developed for isopach maps, aquifer temperature maps, and several states are working on geothermal resource overview maps. Content models are developed preferentially from existing community use in order to encourage widespread adoption and promulgate minimum metadata quality standards. Geoscience data and maps from other NGDS participating institutions, or “nodes” (USGS, Southern Methodist University, Boise State University Geothermal Data Coalition) are being supplemented with extensive land management and land use resources from the Western Regional Partnership (15 federal agencies and 5 Western states) to provide access to a comprehensive, holistic set of data critical to geothermal energy development. As of September 2011, we have over 34,000 records registered in the system catalog, and 234,942 data resources online, along with scores of Web services to deliver integrated data to the desktop for free downloading or online use. The data exchange mechanism is built on the U.S. Geoscience Information Network (USGIN, http://usgin.org and http://lab.usgin.org) protocols and standards developed as a partnership of the Association of American State Geologists (AASG) and U.S. Geological Survey.

15 GEOTHERMAL ENERGY↗