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At least 973 records · Page 54

rBahadur: efficient simulation of structured high-dimensional genotype data with applications to assortative mating

Existing methods for generating synthetic genotype data are ill-suited for replicating the effects of assortative mating (AM). We propose rb_dplr, a novel and computationally efficient algorithm for generating high-dimensional binary random variates that effectively recapitulates AM-induced genetic architectures using the Bahadur order-2 approximation of the multivariate Bernoulli distribution. The rBahadur R library is available through the Comprehensive R Archive Network at https://CRAN.R-project.org/package=rBahadur.

59 BASIC BIOLOGICAL SCIENCES↗

Core–Shell to Doped Quantum Dots: Evolution of the Local Environment Using XAFS

Internal structure study at an atomic level is a challenging task with far reaching consequences to its material properties, specifically in the field of transition metal doping in quantum dots. Diffusion of transition metal ions in and out of quantum dots forming magnetic clusters has been a major bottleneck in this class of materials. Diffusion of the magnetic ions from the core into the nonmagnetic shell in a core/shell heterostructure architecture to attain uniform doping has been recently introduced and yet to be understood. In this work, we have studied the local structure variation of Fe as a function of CdS matrix thickness and annealing time during the overcoating of Fe 3 O 4 core with CdS using X-ray absorption spectroscopy. The data reveals that Fe 3 O 4 core initially forms a core/shell structure with CdS followed by alloying at the interface eventually completely diffusing all the way through the CdS matrix to form homogeneously Fe-doped CdS QDs with excellent control over size and size distribution. Study of Fe K-edge shows a complete change of Fe local environment from Fe–O to FeS.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

New interaction potentials for borate glasses with mixed network formers

Here, we adapt and apply a recently developed optimization scheme used to obtain effective potentials for aluminosilicate glasses to include the network former boron into the interaction parameter set. As input data for the optimization, we used the radial distribution functions of the liquid at high temperature generated by ab initio molecular dynamics simulations, and density, coordination, and elastic modulus of glass at room temperature from experiments. The new interaction potentials are shown to reliably reproduce the structure, coordination, and mechanical properties over a wide range of compositions for binary alkali borates. Furthermore, the transferability of these new interaction parameters allows mixing to reliably reproduce the properties of various boroaluminate and borosilicate glasses.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Modeling the aqueous interface of amorphous TiO 2 using deep potential molecular dynamics

Amorphous titanium dioxide (a-TiO 2 ) is widely used as a coating material in applications such as electrochemistry and self-cleaning surfaces where its interface with water has a central role. However, little is known about the structures of the a-TiO 2 surface and aqueous interface, particularly at the microscopic level. In this work, we construct a model of the a-TiO 2 surface via a cut-melt-and-quench procedure based on molecular dynamics simulations with deep neural network potentials (DPs) trained on density functional theory data. After interfacing the a-TiO 2 surface with water, we investigate the structure and dynamics of the resulting system using a combination of DP-based molecular dynamics (DPMD) and ab initio molecular dynamics (AIMD) simulations. Both AIMD and DPMD simulations reveal that the distribution of water on the a-TiO 2 surface lacks distinct layers normally found at the aqueous interface of crystalline TiO 2 , leading to an ~10 times faster diffusion of water at the interface. Bridging hydroxyls (Ti 2 –O b H) resulting from water dissociation decay several times more slowly than terminal hydroxyls (Ti–O w H) due to fast Ti–O w H 2 → Ti–O w H proton exchange events. These results provide a basis for a detailed understanding of the properties of a-TiO 2 in electrochemical environments. Moreover, the procedure of generating the a-TiO 2 -interface employed here is generally applicable to studying the aqueous interfaces of amorphous metal oxides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Alkali hydroxide (LiOH, NaOH, KOH) in water: Structural and vibrational properties, including neutron scattering results

Structural and vibrational properties of aqueous solutions of alkali hydroxides (LiOH, NaOH, and KOH) are computed using quantum molecular dynamics simulations for solute concentrations ranging between 1 and 10M. Element-resolved partial radial distribution functions, neutron and x-ray structure factors, and angular distribution functions are computed for the three hydroxide solutions as a function of concentration. The vibrational spectra and frequency-dependent conductivity are computed from the Fourier transforms of velocity autocorrelation and current autocorrelation functions. Our results for the structure are validated with the available neutron data for 17M concentration of NaOH in water [Semrouni et al., Phys. Chem. Chem. Phys. 21, 6828 (2019)]. We found that the larger ionic radius [rLi+

Chemistry↗

Neural-network extraction of unpolarised transverse-momentum-dependent distributions

We present the first extraction of transverse-momentum-dependent distributions of unpolarized quarks from experimental Drell-Yan data using neural networks to parametrize their nonperturbative part. We show that neural networks outperform traditional parametrizations providing a more accurate description of data. This Letter establishes the feasibility of using neural networks to explore the multidimensional partonic structure of hadrons and paves the way for more accurate determinations based on machine-learning techniques.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Gamma Decay of the 154 Sm Isovector Giant Dipole Resonance: Smekal-Raman Scattering as a Novel Probe of Nuclear Ground-State Deformation

𝛾 decays of the isovector giant dipole resonance (IVGDR) of the deformed nucleus 154 Sm were measured using 2$^{+}_{1}$-Smekal-Raman and elastic scattering of linearly polarized, quasimonochromatic photon beams. The two scattering processes were disentangled through their distinct angular distributions. Their branching ratio and cross sections were determined at six excitation energies covering the 154 Sm IVGDR. Both agree with the predictions of the geometrical model for the IVGDR and confirm 𝛾 decay as an observable sensitive to the structure of the resonance. Consequently, the data place strong constraints on the nuclear shape, including the degree of triaxiality. The derived 154 Sm shape parameters 𝛽 = 0.2925⁢(25) and 𝛾 = 5.0⁢(15)° agree well with other measurements and recent Monte Carlo shell-model calculations.

150 ≤ A ≤ 189↗

The Pixel Anomaly Detection Tool : a user-friendly GUI for classifying detector frames using machine-learning approaches

Data collection at X-ray free electron lasers has particular experimental challenges, such as continuous sample delivery or the use of novel ultrafast high-dynamic-range gain-switching X-ray detectors. This can result in a multitude of data artefacts, which can be detrimental to accurately determining structure-factor amplitudes for serial crystallography or single-particle imaging experiments. Here, a new data-classification tool is reported that offers a variety of machine-learning algorithms to sort data trained either on manual data sorting by the user or by profile fitting the intensity distribution on the detector based on the experiment. This is integrated into an easy-to-use graphical user interface, specifically designed to support the detectors, file formats and software available at most X-ray free electron laser facilities. The highly modular design makes the tool easily expandable to comply with other X-ray sources and detectors, and the supervised learning approach enables even the novice user to sort data containing unwanted artefacts or perform routine data-analysis tasks such as hit finding during an experiment, without needing to write code.

47 OTHER INSTRUMENTATION↗

Alternatives to Contour Visualizations for Power Systems Data

Electrical grids are geographical and topological structures whose voltage states are challenging to represent accurately and efficiently for visual analysis. The current common practice is to use colored contour maps, yet these can misrepresent the data. We examine the suitability of four alternative visualization methods for depicting voltage data in a geographically dense distribution system - Voronoi polygons, H3 tessellations, S2 tessellations, and a network-weighted contour map. We find that Voronoi tessellations and network-weighted contour maps more accurately represent the statistical distribution of the data than regular contour maps.

MATHEMATICS AND COMPUTING,POWER TRANSMISSION AND D↗

Design and Analysis Progress of ITER Diagnostic Equatorial Port #09

ITER is the world's largest fusion device currently under construction in the South of France with >50 diagnostic systems to be installed inside the port plugs (PPs), the interspace (IS), or the port cell region of various diagnostic ports. The plasma facing diagnostic first wall (DFW) and its supporting diagnostic shield modules (DSM) are designed to protect front-end diagnostics from plasma neutron and plasma radiation, while providing apertures for diagnostic access to the plasma. The design of ITER port plug structures including the DFW and the DSM is largely driven by the electromagnetic loads included on the PP structural components during plasma major disruptions and the vertical displacement events (VDEs). Unlike DFW and DSM, the design of diagnostic system, however, is likely driven by the steady-state thermal loads from plasma volumetric and surface heating and the dynamic response of the in-port components attached to the port-specific DSM or closure plate under transient loads induced on the vacuum vessel and the port extension during asymmetric VDEs. Three tenant diagnostic systems are integrated into the equatorial port 09. The toroidal interferometer/polarimeter, or TIP system, is installed in the left drawer (DSM3, left looking from plasma) for measuring the plasma density so to control the fuel input. The electron cyclotron emission (ECE) system is installed in the middle drawer (DSM2) to provide the high spatial and temporal resolution measurements of electron temperature evolution and the electron thermal transport inferences. The visible/infrared wide angle viewing system is installed in the right drawer (DSM1) to provide visible and infrared viewing and temperature data of the first wall for its protection in support of machine operation. The port plug integration design and multiphysics analyses are performed following port integration requirements including the weight limit (45 tones total), shut down dose rate limits, the cooling/heating and structural integrity validation. Mass distribution for TIP and ECE DSMs has been optimized to minimize the total weight by a new design of the boron carbide shielding pocket. Furthermore, the lightened DSM maintains its front-end load distribution and the structural stiffness with minimum impact to the DFW so to better protect on-board diagnostics; while still provides sufficient front-end stiffness for its structural integrity as well as the diagnostics function requirements.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Structural analyses of amorphous calcium carbonate before and after removing strontium ions from an aqueous solution

Amorphous calcium carbonate (ACC) is a precursor of crystalline calcium carbonate; hence, its structural information at the atomic level is very important for controlling the morphology of crystalline calcium carbonate. In this study, we attempted to elucidate the process of Sr extraction from aqueous solution by using ACC for the purpose of removal of radioactive Sr from the contaminated water leaked after the Fukushima Daiichi nuclear accident. Here, the pair distribution functions, g(r) obtained by X-ray and neutron diffraction (ND) measurements show that ACC has a structure partially similar to that of monohydrocalcite, suggesting that ACC is transferred to the crystalline calcium carbonate starting from its crystal nucleus. Rietveld analysis of the ND data showed that the ACC that removed Sr was crystallized to calcite. However, the Sr–O coordination analyzed using extended X-ray absorption fine structure (EXAFS) implies that the local environment of O around Sr is similar to that in crystalline calcium carbonate aragonite.

36 MATERIALS SCIENCE↗

Measuring and Modeling Bipartite Graphs with Community Structure

Network science is a powerful tool for analyzing complex systems in fields ranging from sociology to engineering to biology. This paper is focused on generative models of bipartite graphs, also known as two-way graphs. We propose two generative models that can be easily tuned to reproduce the characteristics of real-world networks, not just qualitatively, but quantitatively. The measurements we consider are the degree distributions and the bipartite clustering coefficient, which we refer to as the metamorphosis coefficient. We define edge, node, and degreewise metamorphosis coefficients, enabling a more detailed understand of the bipartite community structure. Our proposed bipartite Chung-Lu model is able to reproduce real-world degree distributions, and our proposed bipartite “BTER” model reproduces both the degree distributions as well as the degreewise metamorphosis coefficients. We demonstrate the effectiveness of these models on several real-world data sets.

97 MATHEMATICS AND COMPUTING↗

Predicting Emission Source Terms in a Reduced-Order Fire Spread Model—Part 1: Particulate Emissions

A simple, easy-to-evaluate, surrogate model was developed for predicting the particle emission source term in wildfire simulations. In creating this model, we conceptualized wildfire as a series of flamelets, and using this concept of flamelets, we developed a one-dimensional model to represent the structure of these flamelets which then could be used to simulate the evolution of a single flamelet. A previously developed soot model was executed within this flamelet simulation which could produce a particle size distribution. Executing this flamelet simulation 1200 times with varying conditions created a data set of emitted particle size distributions to which simple rational equations could be tuned to predict a particle emission factor, mean particle size, and standard deviation of particle sizes. These surrogate models (the rational equation) were implemented into a reduced-order fire spread model, QUIC-Fire. Using QUIC-Fire, an ensemble of simulations were executed for grassland fires, southeast U.S. conifer forests, and western mountain conifer forests. Resulting emission factors from this ensemble were compared against field data for these fire classes with promising results. Also shown is a predicted averaged resulting particle size distribution with the bulk of particles produced to be on the order of 1 μm in size.

54 ENVIRONMENTAL SCIENCES↗

Alternatives to Contour Visualizations for Power Systems Data

Electrical grids are geographical and topological structures whose voltage states are challenging to represent accurately and efficiently for visual analysis. The current common practice is to use colored contour maps, yet these can misrepresent the data. We examine the suitability of four alternative visualization methods for depicting voltage data in a geographically dense distribution system-Voronoi polygons, H3 tessellations, S2 tessellations, and a network-weighted contour map. We find that Voronoi tessellations and network-weighted contour maps more accurately represent the statistical distribution of the data than regular contour maps.

MATHEMATICS AND COMPUTING↗

An operation verification strategy against network attack of DCS in nuclear power plant - 323

Digital Instrumentation and control (I and C) system serves as the 'senses and nervous system' of a nuclear power plant (NPP). It plays an important role in the safe and economic operation in the NPPs. Digital I and C system has a series of advantages compared with analogue ones, but the introduction of the operation system platform, the application software, and the network communication structure are causing security risk to the power plant. Different kinds of procedures have already been adopted against these risks such as the communication isolation, but the security attacks still occur from time to time in the industrial fields around the world. This paper presents two computer security methods based on the thought of software verification and validation with step-by-step operation identification. First, three scenarios of security attack are proposed according to the structure of a distributed control system (DCS). Then a method with two network bypasses and a security computer are adopted to obtain the operation commands, the actuation signal, and the operation feedback in case of the first two scenarios by identifying the consistency of the obtained data. Furthermore, the method is optimized by combining the operation procedure and the camera shot to identify the anomaly of the information flow, thus to improve the effectiveness against the computer security issues. In the end, the influence and feasibility of this method is discussed. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Precision Measurements of the Neutron Magnetic Form Factor to High Momentum Transfer using Durand’s Method

Protons and neutrons, collectively known as nucleons, along with electrons, constitute the fundamental building blocks of the visible universe. Understanding their internal structure is crucial for addressing key scientific questions about our origin and existence. Elastic electron-nucleon scattering provides insights into the spatial distributions of charge and current within nucleons through their electromagnetic form factors. Accurate knowledge of these form factors over a broad range of Q2, the squared four-momentum transfer in the scattering process, reveals details about the nucleon's internal structure. However, high-Q2 data of the nucleon electromagnetic form factor is scarce due to the challenges associated with such measurements. This thesis reports preliminary results from high-precision measurements of the neutron magnetic form factor (GMn) to unprecedented Q2 using Durand's method, also known as the "ratio" method. Systematic errors are greatly reduced by ext

Datta, Provakar↗

Precision Measurements of the Neutron Magnetic Form Factor to High Momentum Transfer using Durand's Method

Protons and neutrons, collectively known as nucleons, along with electrons, constitute the funda- mental building blocks of the visible universe. Understanding their internal structure is crucial for addressing key scientific questions about our origin and existence. Elastic electron-nucleon scatter- ing provides insights into the spatial distributions of charge and current within nucleons through their electromagnetic form factors. Accurate knowledge of these form factors over a broad range of Q2, the squared four-momentum transfer in the scattering process, reveals details about the nucleon’s internal structure. However, high-Q2 data of the nucleon electromagnetic form factor is scarce due to the challenges associated with such measurements. This thesis reports preliminary results from high-precision measurements of the neutron magnetic form factor (Gn M ) to unprecedented Q2 using Durand’s method, also known as the “ratio” method. Systematic errors are greatly reduced by extracting Gn M from the ratio of neutron-coincident (D(e, e'n)) to proton-coincident (D(e, e'p)) quasi-elastic electron scattering from deuteron. The scattered electrons were detected in the BigBite spectrometer, which features multiple Gas Elec- tron Multiplier (GEM) layers with large active area for high-precision tracking at very high rates. Simultaneous nucleon detection was performed by the Super BigBite spectrometer, which utilizes a dipole magnet with large solid angle acceptance at forward angles and a novel hadron calorimeter with very high and comparable detection efficiencies for both protons and neutrons. This setup could handle very high luminosity, making high-Q2 measurements feasible. Data were collected at five Q2 points: 3, 4.5, 7.4, 9.9, and 13.6 (GeV/c)2. Preliminary results are reported for all, with the lowest two Q2 points in good agreement with existing world data, while the higher points significantly extend the Q2 range in which Gn M is known accurately. The precision of the highest Q2 point is expected to remain unmatched for years to come.

Datta, Provakar↗

Analysis of parton distributions in a pion with Bézier parametrizations

We explore the role of parametrizations for nonperturbative QCD functions in global analyses, with a specific application to extending a phenomenological analysis of the parton distribution functions (PDFs) in the charged pion realized in the xFitter fitting framework. The parametrization dependence of PDFs in our pion fits substantially enlarges the uncertainties from the experimental sources estimated in the previous analyses. We systematically explore the parametrization dependence by employing a novel technique to automate generation of polynomial parametrizations for PDFs that makes use of Bézier curves. This technique is implemented in a ++ module that is included in the xFitter program. Our analysis reveals that the sea and gluon distributions in the pion are not well disentangled, even when considering measurements in leading-neutron deep inelastic scattering. For example, the pion PDF solutions with a vanishing gluon and large quark sea are still experimentally allowed, which elevates the importance of ongoing lattice and nonperturbative QCD calculations, together with the planned pion scattering experiments, for conclusive studies of the pion structure. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗