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At least 973 records · Page 54

Research on ignition and combustion in oxygen systems.

The work on ignition and combustion research in oxygen systems under the sponsorship of NASA's Aerospace Safety Research and Data Institute (ASRDI) is described. Preliminary results of ignition of nonmetallic materials by electric arc and mechanical impact are presented. Ignition by a resonant process involving repeated shock waves has been demonstrated and some of the results included. In addition, results of studies concerned with ignition due to the rapid rupture of metal films and diaphragms are reviewed. Burning rate studies of three nommetallic materials in oxygen enriched environments were completed and the results are presented.

Ordin, P. M.↗

The isotopic composition of cosmic rays with Z between 5 and 26

Results are reported for a high-altitude balloon flight which measured the isotopic composition of cosmic rays by using a Cerenkov-range technique to determine the masses of arriving cosmic rays with charges between 5 and 26 for kinetic energies around 450 MeV/amu. Event-selection criteria are discussed, and the mass-determination technique is outlined. Some of the mass histograms resulting from the analysis are presented along with the mean masses calculated from the data, and the derived isotopic compositions. It is found that: (1) C, N, and O are consistent with pure C-12, N-14, and O-16 sources; (2) Mg seems to require some neutron-rich component at the source; (3) Ne appears to require a source isotopic composition that is even more neutron-rich than the universal abundances; and (4) the source may be somewhat enriched in Fe-54. It is suggested that the fundamental nuclear physics which governed the synthesis of solar-system material may also be responsible for cosmic rays, implying that the solar system is probably an average sample of galactic matter.

Fisher, A. J.↗

Apollo 14 glasses and the origin of lunar soils

Electron microprobe for comparison with soil glass data were used to analyze homogeneous and heterogeneous glass clasts in four Apollo 14 regolith breccias (14042, 14301, 14313, and 14315). Glass types in the Apollo 14 samples were found to be dominated by highland compositions, which include KREEP, LKFM and highland basalt varieties. Only 14042 has a highland glass population similar to those of local Apollo 14 soils. Breccia 14301 stands out in that it is enriched in KREEP glasses with high K2O content, which are similar in composition to Apollo 12 ropy glasses. Only 14042 could be made from local present-day soils. Some of the ancient soils did not undergo breccia formation and closure, and they evolved by meteorite impact processing, by mixing together in various proportions, and by changes made by the addition of lithic fragments and other components. It is suggested that the Apollo 14 soils are made from mixtures of comminuted regolith breccias. A likely age sequence is presented.

Wentworth, S. J.↗

Entire expressed peripheral blood transcriptome in pediatric severe malarial anemia

Abstract This study on severe malarial anemia (SMA: Hb < 6.0 g/dL), a leading global cause of childhood morbidity and mortality, compares the entire expressed whole blood host transcriptome between Kenyan children (3-48 mos.) with non-SMA (Hb ≥ 6.0 g/dL, n = 39) and SMA ( n = 18). Differential expression analyses reveal 1403 up-regulated and 279 down-regulated transcripts in SMA, signifying impairments in host inflammasome activation, cell death, and innate immune and cellular stress responses. Immune cell profiling shows decreased memory responses, antigen presentation, and immediate pathogen clearance, suggesting an immature/improperly regulated immune response in SMA. Module repertoire analysis of blood-specific gene signatures identifies up-regulation of erythroid genes, enhanced neutrophil activation, and impaired inflammatory responses in SMA. Enrichment analyses converge on disruptions in cellular homeostasis and regulatory pathways for the ubiquitin-proteasome system, autophagy, and heme metabolism. Pathway analyses highlight activation in response to hypoxic conditions [Hypoxia Inducible Factor (HIF)−1 target and Reactive Oxygen Species (ROS) signaling] as a central theme in SMA. These signaling pathways are also top-ranking in protein abundance measures and a Ugandan SMA cohort with available transcriptomic data. Targeted RNA-Seq validation shows strong concordance with our entire expressed transcriptome data. These findings identify key molecular themes in SMA pathogenesis, offering potential targets for new malaria therapies.

60 APPLIED LIFE SCIENCES↗

Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss)

Abstract Background and Aims New plant species can evolve through the reinforcement of reproductive isolation via local adaptation along habitat gradients. Peat mosses (Sphagnaceae) are an emerging model system for the study of evolutionary genomics and have well-documented niche differentiation among species. Recent molecular studies have demonstrated that the globally distributed species Sphagnum magellanicum is a complex of morphologically cryptic lineages that are phylogenetically and ecologically distinct. Here, we describe the architecture of genomic differentiation between two sister species in this complex known from eastern North America: the northern S. diabolicum and the largely southern S. magniae. Methods We sampled plant populations from across a latitudinal gradient in eastern North America and performed whole genome and restriction-site associated DNA sequencing. These sequencing data were then analyzed computationally. Key Results Using sliding-window population genetic analyses we find that differentiation is concentrated within ‘islands’ of the genome spanning up to 400 kb that are characterized by elevated genetic divergence, suppressed recombination, reduced nucleotide diversity and increased rates of non-synonymous substitution. Sequence variants that are significantly associated with genetic structure and bioclimatic variables occur within genes that have functional enrichment for biological processes including abiotic stress response, photoperiodism and hormone-mediated signalling. Demographic modelling demonstrates that these two species diverged no more than 225 000 generations ago with secondary contact occurring where their ranges overlap. Conclusions We suggest that this heterogeneity of genomic differentiation is a result of linked selection and reflects the role of local adaptation to contrasting climatic zones in driving speciation. This research provides insight into the process of speciation in a group of ecologically important plants and strengthens our predictive understanding of how plant populations will respond as Earth’s climate rapidly changes.

58 GEOSCIENCES↗

Genome-Wide Analysis of RNA Decay in the Cyanobacterium Synechococcus sp. Strain PCC 7002

ABSTRACT RNA degradation is an important process that influences the ultimate concentration of individual proteins inside cells. While the main enzymes that facilitate this process have been identified, global maps of RNA turnover are available for only a few species. Even in these cases, there are few sequence elements that are known to enhance or destabilize a native transcript; even fewer confer the same effect when added to a heterologous transcript. To address this knowledge gap, we assayed genome-wide RNA degradation in the cyanobacterium Synechococcus sp. strain PCC 7002 by collecting total RNA samples after stopping nascent transcription with rifampin. We quantified the abundance of each position in the transcriptome as a function of time using RNA-sequencing data and later analyzed the global mRNA decay map using machine learning principles. Half-lives, calculated on a per-ORF (open reading frame) basis, were extremely short, with a median half-life of only 0.97 min. Despite extremely rapid turnover of most mRNA, transcripts encoding proteins involved in photosynthesis were both highly expressed and highly stable. Upon inspection of these stable transcripts, we identified an enriched motif in the 3′ untranslated region (UTR) that had similarity to Rho-independent terminators. We built statistical models for half-life prediction and used them to systematically identify sequence motifs in both 5′ and 3′ UTRs that correlate with stabilized transcripts. We found that transcripts linked to a terminator containing a poly(U) tract had a longer half-life than both those without a poly(U) tract and those without a terminator. IMPORTANCE RNA degradation is an important process that affects the final concentration of individual mRNAs, affecting protein expression and cellular physiology. Studies of how RNA is degraded increase our knowledge of this fundamental process as well as enable the creation of genetic tools to manipulate RNA stability. By studying global transcript turnover, we searched for sequence elements that correlated with transcript (in)stability and used these sequences to guide tool design. This study probes global RNA turnover in a cyanobacterium, Synechococcus sp. strain PCC 7002, that both has a unique array of RNases that facilitate RNA degradation and is an industrially relevant strain that could be used to convert CO 2 and sunlight into useful products.

59 BASIC BIOLOGICAL SCIENCES↗

The lunar regolith - Chemistry and petrology of Luna 24 grain size fractions

Chemical data obtained by instrumental neutron activation analysis are reported for 30 elements in eight lunar soil size fractions from 370 to less than 2 microns, as well as petrology for five size fractions down to 40-10 microns in two Luna 24 soils. While the compositions of coarser fractions are similar to each other, they differ from the fractions smaller than 10 microns; these become increasingly feldspathic and enriched in large ion lithophile elements (LILE) with decreasing grain size. The high concentrations of the Ni, Au and Ir meteoritic indicator elements in these finer fractions are consistent with comminution by meteoritic impact. Size distributions, petrology and LILE patterns indicate that Luna 24 soils are less reworked than most lunar soils.

Laul, J. C.↗

Connecting the Interstellar Gas and Dust Properties in Distant Galaxies Using Quasar Absorption Systems

Gas and dust grains are fundamental components of the interstellar medium and significantly impact many of the physical processes driving galaxy evolution, such as star-formation, and the heating, cooling, and ionization of the interstellar material. Quasar absorption systems (QASs), which trace intervening galaxies along the sightlines to luminous quasars, provide a valuable tool to directly study the properties of the interstellar gas and dust in distant, normal galaxies. We have established the presence of silicate dust grains in at least some gas-rich QASs, and find that they exist at higher optical depths than expected for diffuse gas in the Milky Way. Differences in the absorption feature shapes additionally suggest variations in the silicate dust grain properties, such as in the level of grain crystallinity, from system-to-system. We present results from a study of the gas and dust properties of QASs with adequate archival IR data to probe the silicate dust grain properties. We discuss our measurements of the strengths of the 10 and 18 micron silicate dust absorption features in the QASs, and constraints on the grain properties (e.g., composition, shape, crystallinity) based on fitted silicate profile templates. We investigate correlations between silicate dust abundance, reddening, and gas metallicity, which will yield valuable insights into the history of star formation and chemical enrichment in galaxies.

Aller, Monique C.↗

Signature analysis of high-throughput transcriptomics screening data for mechanistic inference and chemical grouping

Abstract High-throughput transcriptomics (HTTr) uses gene expression profiling to characterize the biological activity of chemicals in in vitro cell-based test systems. As an extension of a previous study testing 44 chemicals, HTTr was used to screen an additional 1,751 unique chemicals from the EPA’s ToxCast collection in MCF7 cells using 8 concentrations and an exposure duration of 6 h. We hypothesized that concentration-response modeling of signature scores could be used to identify putative molecular targets and cluster chemicals with similar bioactivity. Clustering and enrichment analyses were conducted based on signature catalog annotations and ToxPrint chemotypes to facilitate molecular target prediction and grouping of chemicals with similar bioactivity profiles. Enrichment analysis based on signature catalog annotation identified known mechanisms of action (MeOAs) associated with well-studied chemicals and generated putative MeOAs for other active chemicals. Chemicals with predicted MeOAs included those targeting estrogen receptor (ER), glucocorticoid receptor (GR), retinoic acid receptor (RAR), the NRF2/KEAP/ARE pathway, AP-1 activation, and others. Using reference chemicals for ER modulation, the study demonstrated that HTTr in MCF7 cells was able to stratify chemicals in terms of agonist potency, distinguish ER agonists from antagonists, and cluster chemicals with similar activities as predicted by the ToxCast ER Pathway model. Uniform manifold approximation and projection (UMAP) embedding of signature-level results identified novel ER modulators with no ToxCast ER Pathway model predictions. Finally, UMAP combined with ToxPrint chemotype enrichment was used to explore the biological activity of structurally related chemicals. The study demonstrates that HTTr can be used to inform chemical risk assessment by determining in vitro points of departure, predicting chemicals’ MeOA and grouping chemicals with similar bioactivity profiles.

Toxicology↗

Using electronic health record metadata to predict housing instability amongst veterans

Housing instability is considered a significant life stressor and preemptive screening should be applied to identify those at risk for homelessness as early as possible so that they can be targeted for specialized care. We developed models to classify patient outcomes for an established VA Homelessness Screening Clinical Reminder (HSCR), which identifies housing instability, in the two months prior to its administration. Logistic Regression and Random Forest models were fit to classify responses using the last 18 months of document activity. We measure concentration of risk across stratifications of predicted probability and observe an enriched likelihood of finding confirmed false negative responses from veterans with diagnosed housing instability. Positive responses were 34 times more likely to be detected within the top 1 % of patients predicted at risk than from those randomly selected. There is a 1 in 4 chance of detecting false negatives within the top 1 % of predicted risk. Machine learning methods can classify between episodes of housing instability using a data-driven approach that does not rely on variables curated from domain experts. This method has the potential to improve clinicians’ ability to identify veterans who are experiencing housing instability but are not captured by HSCR.

60 APPLIED LIFE SCIENCES↗

A seed-like proteome in oil-rich tubers

There are numerous examples of plant organs or developmental stages that are desiccation-tolerant and can withstand extended periods of severe water loss. One prime example are seeds and pollen of many spermatophytes. However, in some plants, also vegetative organs can be desiccation-tolerant. One example are the tubers of yellow nutsedge ( Cyperus esculentus ), which also store large amounts of lipids similar to seeds. Interestingly, the closest known relative, purple nutsedge ( Cyperus rotundus ), generates tubers that do not accumulate oil and are not desiccation-tolerant. We generated nanoLC-MS/MS-based proteomes of yellow nutsedge in five replicates of four stages of tuber development and compared them to the proteomes of roots and leaves, yielding 2257 distinct protein groups. Our data reveal a striking upregulation of hallmark proteins of seeds in the tubers. A deeper comparison to the tuber proteome of the close relative purple nutsedge ( C. rotundus ) and a previously published proteome of Arabidopsis seeds and seedlings indicates that indeed a seed-like proteome was found in yellow but not purple nutsedge. This was further supported by an analysis of the proteome of a lipid droplet-enriched fraction of yellow nutsedge, which also displayed seed-like characteristics. One reason for the differences between the two nutsedge species might be the expression of certain transcription factors homologous to ABSCISIC ACID INSENSITIVE3, WRINKLED1, and LEAFY COTYLEDON1 that drive gene expression in Arabidopsis seed embryos.

59 BASIC BIOLOGICAL SCIENCES↗

Separation of Lanthanide Isotopes from Mixed Fission Product Samples

The measurement of radioactive fission products from nuclear events has important implications for nuclear data production, environmental monitoring, and nuclear forensics. In a previous paper, the authors reported the optimization of an intra-group lanthanide separation using LN extraction resin from Eichrom Technologies®, Inc. and a nitric acid gradient. In this work, the method was demonstrated for the separation and quantification of multiple short-lived fission product lanthanide isotopes from a fission product sample produced from the thermal irradiation of highly enriched uranium. The separations were performed in parallel in quadruplicate with reproducible results and high decontamination factors for 153 Sm, 156 Eu, and 161 Tb. Based on the results obtained here, the fission yields for 144 Ce, 153 Sm, 156 Eu, and 161 Tb are consistent with published fission yields. This work demonstrates the effectiveness of the separations for the intended application of short-lived lanthanide fission product analysis requiring high decontamination factors.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Evidence for meteoritic sulfur in the lunar regolith

Abundance and isotopic data are presented for a suite of 19 soils from the Apollo 16 mission. It is concluded that the S systematics of the lunar regolith support a model in which S from a number of indigenous rock types is mixed with a time-dependent, extralunar component of probably meteoritic origin. This mixture is processed on the lunar surface by a time-dependent mechanism which removes S-32 enriched S from the moon, enriching the residue in S-34. The loss of S by this mechanism approximately equals the meteoritic input, producing the apparent coincidence between rock abundances and abundances in soils which has led to adoption of simplified mixing models. In reality, at least for the Apollo 16 site, addition of meteoritic S slightly outweighs loss from the moon, resulting in a positive trend.

Kerridge, J. F.↗

Sm-Nd and Rb-Sr isotopic systematics of ureilites

The present evaluation of Sm-Nd and Rb-Sr isotopic data for seven ureilites establishes their divisions into three groups on the bases of Sm-Nd isotopic systematics. The first group of ureilites is made up of whole-rock samples whose highly depleted assemblages indicate Sm-Nd model ages consistent with 4.55 Ga. The second group of whole-rock samples of Kenna, Novo Urei, and ALHA77257 are heterogeneous mixtures of an unidentified light REE-enriched component and a light REE-depleted olivine-pyroxene assemblage. In the third group, LEW85440 neither has a model Sm-Nd age of 4.55 Ga nor plots of the 3.74 Ga isochron of the Kenna group; it might have had an evolution similar to the Kenna group, but involving different times and/or isotopic compositions.

Goodrich, Cyrena Anne↗

The origin of chromitic chondrules and the volatility of Cr under a range of nebular conditions

We characterize ten chromatic chondrules, two spinelian chondrules andd one spinel-bearing chondrule and summarize data for 120 chromitic inclusions discovered in an extensive survey of ordinary chondrites. Compositional and petrographic evidence suggests that chromitic chondrules and inclusions are closely related. The Cr/(Cr + Al) ratios in the spinal of these objects range from 0.5 to 0.9 and bulk Al2O3 contents are uniformly high (greater than 10 wt%, except for one with 8 wt%). No other elements having comparable solar abundances are so stongly enriched, and alkali feldspar and merrillite are more common than in normal chondrules. The Cr/Mg ratios in chromitic chondrules are 180-750 times the ratios in the bulk chondrite. With the possible exception of magnetic clumping of chromite in the presolar cloud, mechanical processes cannot account for this enrichment. Examination of nebular equilibrium processes shows that 50%-condensation temperatures of Cr at pH2/pH2O of 1500 are several tens of degrees below those of Mg as Mg2SiO4; the condensation of Cr is primarily as MgCr2O4 dissolved in MgAl2O4 at nebular pressures of 10(exp -4) atm or below. At pH2 = 10(exp -3) atm condesation as Cr in Fe-Ni is favored. Making the nebula much more oxidizing reduces the difference in condensation temperatures but Mg remains more refractory. We conclude that nebular equilibrium processes are not responsible for the enhanced Cr/Mg ratios. We propose that both Cr and Al became enriched in residues formed by incomplete evaporation of presolar lumps. We suggest that spinals remained as solid phases when the bulk of the silicates were incorporated into the evaporating melt; vaporization of Al and Cr were inhibited by the slow kinetics of diffusion. Subsequent melting and crystallization of these residues fractionated Cr from Al. The resulting materials constituted major components in the precursors of chromitic chondrules. Our model implies that chromitic chondrules and inclusions preserve the Cr isotopic record of presolar sources.

Krot, Alexander↗

An In-Depth Study of the Abundance Pattern in the Hot Interstellar Medium in NGC 4649

We present our X-ray imaging spectroscopic analysis of data from deep Suzaku and XMM-Newton Observatory exposures of the Virgo Cluster elliptical galaxy NGC 4649 (M60), focusing on the abundance pattern in the hot interstellar medium (ISM). All measured elements show a radial decline in abundance, with the possible exception of Oxygen. We construct steady state solutions to the chemical evolution equations that include infall in addition to stellar mass return and Type Ia supernovae (SNIa) enrichment, and consider recently published SNIa yields. By adjusting a single model parameter to obtain a match to the global abundance pattern in NGC 4649 we infer that introduction of subsolar metallicity external gas has reduced the overall ISM metallicity and diluted the effectiveness of SNIa to skew the pattern towards low alpha/Fe ratios, and estimate the combination of SNIa rate and level of dilution. Evidently, newly-introduced gas is heated as it is integrated into, and interacts with, the hot gas that is already present. These results indicate a complex flow and enrichment history for NGC 4649, reflecting the continual evolution of elliptical galaxies beyond the formation epoch. The heating and circulation of accreted gas may help reconcile this dynamic history with the mostly passive evolution of elliptical stellar populations. In an appendix we examine the effects of the recent updated atomic database AtomDB in spectral fitting of thermal plasmas with hot ISM temperatures in the elliptical galaxy range.

Loewenstein, Michael↗

Patterns of Trace Element Accumulation in Waterfowl Restricted to Impoundments Holding Coal Combustion Waste

Waterfowl are often exposed to and readily accumulate anthropogenic contaminants when foraging in polluted environments. Settling impoundments containing coal combustion waste (CCW) enriched in trace elements such as arsenic (As), selenium (Se), and mercury (Hg) are often used by free-ranging migratory and resident waterfowl and represent potential sources for contaminant uptake. To assess accumulation of CCW contaminants, we experimentally restricted waterfowl to a CCW-contaminated impoundment and quantified trace element burdens in blood, muscle, and liver tissues over known periods of exposure (between 3 and 92 d). From these data we developed models 1) to predict elemental bioaccumulation with increased exposure time, and 2) to predict muscle/liver burdens based on concentrations in blood as a nondestructive sampling method. Although Hg and As did not bioaccumulate in our waterfowl, we observed an increase in Se concentrations in muscle, liver, and blood tissues over the duration of our experiment. Furthermore, we found that blood may be used as an effective nondestructive sampling alternative to predict muscle and liver tissue concentrations in birds contaminated with Se and As through dietary exposure. These data provide unique insights into accumulation rates of contaminants for waterfowl utilizing habitats contaminated with CCW and demonstrate the efficacy of nonlethal sampling of waterfowl to quantify contaminant exposure. Environ Toxicol Chem 2020;39:1052–1059.

54 ENVIRONMENTAL SCIENCES↗

Trivalent titanium in high-titanium lunar ilmenite

Lunar mare basalts are often rich in titanium, hosted predominantly within the mineral ilmenite (Fe 2+ Ti 4+ O 3 ). Here, we examine ilmenite in a ~3.8 billion-year-old mare basalt (Apollo rock 75035) using high-resolution electron microscopy and electron energy loss spectroscopy. A key finding is that 75035 ilmenite is itself enriched in Ti, beyond the end member of the conventional solid solution series. Using energy loss near-edge spectroscopy, we determine that the excess Ti is trivalent, with Ti 3+ accounting for 13% of the total Ti content. This discovery confirms the presence of trivalent Ti in lunar ilmenite, long hypothesized based on the Moon’s reducing environment. Accounting for the change in implied stoichiometry, a review of literature data suggests that Ti 3+ may be present in ilmenite across a wide range of lunar samples. We extrapolate known relationships from the literature to connect Ti 3+ to redox conditions, estimating the oxygen fugacity during crystallization of 75035 to be below the iron-wüstite buffer, ΔIW≤ − 1.6. Further quantifying the relationship between Ti valence state and oxygen fugacity would allow Ti 3+ -bearing ilmenite to serve as an oxybarometer able to access the reducing conditions found on many planetary bodies.

mineralogy↗