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At least 973 records · Page 54

teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering

Synthetic biology dictates the data-driven engineering of biocatalysis, cellular functions, and organism behavior. Integral to synthetic biology is the aspiration to efficiently find, access, interoperate, and reuse high-quality data on genotype-phenotype relationships of native and engineered biosystems under FAIR principles, and from this facilitate forward-engineering strategies. However, biology is complex at the regulatory level, and noisy at the operational level, thus necessitating systematic and diligent data handling at all levels of the design, build, and test phases in order to maximize learning in the iterative design-build-test-learn engineering cycle. To enable user-friendly simulation, organization, and guidance for the engineering of biosystems, we have developed an open-source python-based computer-aided design and analysis platform operating under a literate programming user-interface hosted on Github. The platform is called teemi and is fully compliant with FAIR principles. In this study we apply teemi for i) designing and simulating bioengineering, ii) integrating and analyzing multivariate datasets, and iii) machine-learning for predictive engineering of metabolic pathway designs for production of a key precursor to medicinal alkaloids in yeast. The teemi platform is publicly available at PyPi and GitHub.

59 BASIC BIOLOGICAL SCIENCES↗

Resonant Frequency Derived from the Rayleigh-Wave Dispersion Image: The High-Impedance Boundary Problem

In this work, we present a simple and automated approach to estimate primary site-response resonance, layer thickness, and shear-wave velocity directly from a dispersion image for a layer over half-space problem. We demonstrate this for high-impedance boundary conditions that lie in the upper tens of meters. Our approach eliminates the need for time-consuming dispersion curve picking and 1D shear-wave velocity inversion for large data volumes that can capture velocity structure in profile. We highlight important relationships between dispersion characteristics and resonance parameters through synthetic modeling and field data acquired over Atlantic Coastal Plain sediments. In this environment, shallow soil conditions are critical to accurately estimate earthquake site response. We suggest that this image processing approach can be applied to a range of high-impedance conditions, at a range of scales, or can provide model constraints for more complex velocity structures.

58 GEOSCIENCES↗

A Technical and Economic Assessment of LWR Flexible Operation for Generation and Demand Balancing to Optimize Plant Revenue

With increased penetration of subsidized variable renewable energy (VRE) resources and competition from low natural gas prices, existing light water reactor (LWR) nuclear power plants (NPPs) are struggling to remain economically competitive. This work examines the potential economic competitiveness of various thermal energy storage (TES) technologies when coupled directly or indirectly with a NPP. To highlight their relative economic competitiveness, we contrast several energy storage solutions in stochastic dispatch optimization. We leverage data from recent work analyzing a range of TES technologies with varying capital costs, performance, and technology readiness level (TRL) to establish our case. We explore inserting these technologies into an electricity market with existing nuclear generation and large projected variable renewable energy (VRE) penetration. Although these technologies' projected capital costs may make them unlikely candidates in their current state, this analysis demonstrates a high-fidelity techno-economic analysis of energy storage. Furthermore, as the projected cost of energy storage technologies evolves, this analysis sets a precedent for similar future investigations. One region with projected trends that may be unfavorable for existing nuclear capacity is the New York Independent System Operator (NYISO) market. New York state’s baseload generation has been historically provided by fossil-fired and nuclear assets. However, amid economic pressures from subsidized VREs and low natural gas prices, the state has recently deactivated Indian Point nuclear power plant units 2 and 3. Furthermore, the state plans to meet its zero-emission generation target by 2040 by replacing fossil-fired capacity with significant investments in VRE resources like wind and solar photovoltaic (PV) and battery storage. Increased intermittent resource penetration lowers the baseload power requirement, adding further economic pressure to the state’s three remaining NPPs still in operation. With three NPPs still in operation in New York, this work analyzes potential economic benefits to NPPs on the New York grid when directly or indirectly coupled with various TES technologies. This work requires two modeling steps to analyze the potential economic benefits of various system configurations of the TES directly or indirectly coupled with nuclear. First, this analysis leverages capacity expansion modeling by experts at the Electric Power Research Institute (EPRI). Using their deterministic capacity expansion model, U.S. Regional Economy, Greenhouse Gas, and Energy (US-REGEN), EPRI analysts evaluated the capacity and generation evolution of the New York state energy market under four projection scenarios. These four projection scenarios were developed to represent the potential evolution of the capacity and generation in NYISO from 2015 to 2050 under various economic, technology, and policy constraints. The results from these capacity expansion models are then used as boundary conditions in the second modeling step. The second modeling step uses the Holistic Energy Resource Optimization Network (HERON) for a set of stochastic techno-economic analyses (STEAs) to investigate the potential increase in the economic viability of various configurations of the TES. With no current capacity expansion capabilities, HERON takes the data generated from US-REGEN for 2050 to generate synthetic load, solar, and wind data. Then HERON economically optimizes the capacity and dispatch of the various TES configurations. The potential economic benefit is the differential net present value (NPV) of the TES configurations from the no-TES baseline. As a stochastic techno-economic analysis package, HERON introduces uncertainty into the economic metrics, while US-REGEN trades resolution for reduced computational complexity. Using HERON also allows the modeling of direct thermal coupling, a feature not common in capacity and dispatch models. As expected, with high capital costs, the costs of introducing energy storage for all the technologies considered outweighed the potential economic benefit of this strategy for flexible plant operation. The benefit of this analysis is primarily in demonstrating a workflow that examines innovative solutions to increase NPP revenue via TES coupling. HERON’s stochastic capacity and dispatch optimization process used in this work has proven an effective tool in observing and evaluating the impact of introducing storage technologies in a grid energy system.

25 ENERGY STORAGE↗

Photometric calibration of the HST wide-field/planetary camera. I - Ground-based observations of standard stars

This paper describes the observation and analysis of field stars, undertaken as a step toward understanding the photometric properties of the filters and CCDs aboard the Wide-Field/Planetary Camera of the Hubble Space Telescope. Ground-based CCD observations have been made simulating 15 of the most important WF/PC passbands. Data are presented here for an equatorial network of stars including many UBVRI standards and some spectrophotometric standards. They serve to establish a photometric system that will be used in the calibration of in-flight data and that is useful for the calibration of other ground-based data. Transformations between WF/PC and other photometric systems are discussed, as well as the effects of interstellar absorption and atmospheric extinction on data in the WF/PC system. Synthetic photometry has been used as an aid in the data analysis and is described.

Harris, Hugh C.↗

Identification of modeled ocean plumes in Greenland gyre ERS-1 SAR data

Oceanic convective plumes modeled with a thermobaric large-eddy simulation and driven by conditions similar to those of the Greenland Sea are compared to observations from ERS-1 Synthetic Aperture Radar (SAR) data from the Greenland Sea for the winter of 1992. In both form and size the two representations are seen to compare favorably. The plume-filled area of the SAR image occupies a region about 20 km by 90 km at the ice edge of the open water in 'Nordbukta', the large seasonal ice retreat, in the 'Odden' ice protuberance in the southern Greenland gyre. In the SAR data the plumes appear to be ice covered while the convective-return areas are open.

Carsey, Frank D.↗

Resource-Adaptive Federated Text Generation with Differential Privacy

In cross-silo federated learning (FL), sensitive text datasets remain confined to local organizations due to privacy regulations, making repeated training for each downstream task both communication-intensive and privacy-demanding. A promising alternative is to generate differentially private (DP) synthetic datasets that approximate the global distribution and can be reused across tasks. However, pretrained large language models (LLMs) often fail under domain shift, and federated finetuning is hindered by computational heterogeneity: only resource-rich clients can update the model, while weaker clients are excluded, amplifying data skew and the adverse effects of DP noise. We propose a flexible participation framework that adapts to client capacities. Strong clients perform DP federated finetuning, while weak clients contribute through a lightweight DP voting mechanism that refines synthetic text. To ensure the synthetic data mirrors the global dataset, we apply control codes (e.g., labels, topics, metadata) that represent each client’s data proportions and constrain voting to semantically coherent subsets. This two-phase approach requires only a single round of communication for weak clients and integrates contributions from all participants. Experiments show that our framework improves distribution alignment and downstream robustness under DP and heterogeneity.

Wang, Jiayi [ORNL]↗

Estimating Forest Stand Height in Savannakhet, Lao PDR Using InSAR and Backscatter Methods with L-Band SAR Data

Forest stand height (FSH), or average canopy height, serves as an important indicator for forest monitoring. The information provided about above ground biomass for greenhouse gas emissions reporting, and estimating carbon storage is relevant for reporting for Reducing Emissions from Deforestation and Forest Degradation (REDD+). A novel forest height estimation method utilizing a fusion of backscatter and Interferometric Synthetic Aperture Radar (InSAR) data from JAXA’s Advanced Land Observing Satellite Phased Array type L-band Synthetic Aperture Radar (ALOS PALSAR) are applied to a use case in Savannakhet, Lao. Compared with LiDAR, the estimated height from the fusion method had an RMSE of 4.90 m and an R2 of 0.26. These results are comparable to previous studies using SAR estimation techniques. Despite limitations of data quality and quantity, the Savannakhet, Lao use case demonstrates the applicability of these techniques utilizing L-band SAR data for estimating FSH in tropical forests and can be used as a springboard for use of L-band data from the future NASA-ISRO SAR (NISAR) mission.

remote sensing↗

Shear zone ice deformation using supervised analysis of Seasat data

Spacecraft and aircraft Synthetic-Aperture Radar (SAR) images are commonly used to compute sea ice conditions including especially the drift velocities of ice features. Recent developments, described in this paper, in computer-aided analysis and in digital image processing have extended the analysis speed and accuracy of registration to the point that ice deformation can be examined on the geophysically important scales of about 100 m over tens of kilometers between two 'snapshots.' Examples are shown for the ice motion and rotation in the shear zone near the Alaska coast from Seasat data in 1978.

Carsey, F.↗

Correlation studies of passive and active microwave data in the marginal ice zone

The microwave radiative and backscatter characteristics of sea ice in an Arctic marginal ice zone have been studied using near-simultaneous passive and active synthetic aperture radar microwave data. Intermediate-resolution multichannel passive microwave data were registered and analyzed. Passive and active microwave data generally complement each other as the two sensors are especially sensitive to different physical properties of the sea ice. In the inner pack, undeformed first-year ice is observed to have low backscatter values but high brightness temperatures while multiyear ice has generally high backscatter values and low brightness temperatures. However, in the marginal ice zone, the signature and backscatter for multiyear ice are considerably different and closer to those of first-year ice. Some floes identified by photography as snow-covered thick ice have backscatter similar to that of new ice or open water while brash ice has backscatter similar to or higher than that of ridged ice.

Comiso, J. C.↗

Modeling Subsurface Explosions Recorded on a Distributed Fiber Optic Sensor

Fiber optic distributed acoustic sensors (DAS) are becoming a widely used tool for seismic sensing. Here we examine recordings of two subsurface chemical explosions, DAG-1 and DAG-3, each of which was about one metric ton (TNT equivalent), that were recorded from a helical fiber installed in two boreholes 80 m away from the source location. Several clear phases including the initial P wave, a weak S wave, and a surface reflected P wave are observed on the helical DAS data. We estimate a velocity model using arrival times measured from the fiber. The DAS waveform data were compared with colocated accelerometers at specific depths in both frequency and time domains. Furthermore, the spectra of the DAS data matched spectra estimated from the accelerometer records. Comparisons of observed waveform shape between the accelerometer records and the fiber measurements (strain-rate) show reasonable agreement except for the data near the event depth. The DAS data and the accelerometer agreed in relative amplitudes but we had difficulties in matching absolute amplitudes, possibly due to errors in metadata. Synthetic strain-rate waveforms were calculated using a 2D wavenumber algorithm and matched the waveform shape and relative amplitudes. In general, DAS is effective at recording strong ground motions at high spatial density. Comparison of the synthetic seismograms with observed data indicate that the waveforms are not consistent with a pure isotropic explosion source and that the observed S waves originate from very near the source region.

58 GEOSCIENCES↗

Polarimetric radar data decomposition and interpretation

Significant efforts have been made to decompose polarimetric radar data into several simple scattering components. The components which are selected because of their physical significance can be used to classify SAR (Synthetic Aperture Radar) image data. If particular components can be related to forest parameters, inversion procedures may be developed to estimate these parameters from the scattering components. Several methods have been used to decompose an averaged Stoke's matrix or covariance matrix into three components representing odd (surface), even (double-bounce) and diffuse (volume) scatterings. With these decomposition techniques, phenomena, such as canopy-ground interactions, randomness of orientation, and size of scatters can be examined from SAR data. In this study we applied the method recently reported by van Zyl (1992) to decompose averaged backscattering covariance matrices extracted from JPL SAR images over forest stands in Maine, USA. These stands are mostly mixed stands of coniferous and deciduous trees. Biomass data have been derived from field measurements of DBH and tree density using allometric equations. The interpretation of the decompositions and relationships with measured stand biomass are presented in this paper.

Sun, Guoqing↗

Mapping Vegetative Ground Cover From Polarimetric SAR Data

Three-frequency quad-polarization data used to distinguish among different types of cover. MAPVEG computer program performs first-level classification of NASA/JPL AIRSAR polarimetric synthetic-aperture-radar (SAR) data into simple ground-cover types. Classification images generated used to separate vegetated from nonvegetated areas; useful in determining soil moisture in areas free of vegetation. Classification separates forests from surrounding vegetation, and used to identify clear-cut areas. Urban areas and potential marshlands examples of other identifiable classes. Written in FORTRAN 77.

Chapman, Bruce↗

An Inter Planetary Network Enabled by SmallSats

This paper describes the implementation of an unparalleled large sensor and communications platform along the solar system that we call the inter planetary network (IPN). The proposed IPN consists of thousands of small spacecraft (e.g. CubeSats) strategically deployed around planetary bodies in the solar system where each spacecraft is furnished with fast communications and sensor systems. The IPN concept is being proposed as an avant-garde science and communications platform that could allow for continuous fast communications and remarkable science returns. The IPN spacecraft, furnished with suitable miniaturized sensors, could form an amazing deep space platform for unique observation of the solar system, stars, galaxies and universe. A key feature of the IPN architecture is the use of swarms of spacecraft as network units. Super-high-speed intra-swarm communications could be achieved via omnidirectional optical links. The swarms act as autonomous network nodes and are capable of forming large synthetic apertures that enable high data rate communications among the IPN nodes. Depending on the sensors they carry, these swarms may also be capable of forming large synthetic sensors by rapidly combining data among the spacecraft. We envision distances between spacecraft forming a swarm to be in the range of 102-104 kilometers, whereas distances of 106-108 kilometers among swarms (IPN nodes) are expected. We provide an example of an initial IPN implementation in the inner solar system where swarms of spacecraft are deployed around the Earth, Moon, Mars, Venus and Mercury. Placing swarms around 3 Lagrange points per planet yield a total of 12 possible IPN network nodes. We present communications link calculations among IPN nodes that allow high data rate communications between Earth and Mars while Mars is in solar conjunction (behind the Sun). A second example of an IPN platforms includes a giant spaceborne radio telescope behind the moon.

Velazco, Jose↗

An Inter Planetary Network Enabled by SmallSats

This paper describes the implementation of an unparalleled large sensor and communications platform along the solar system that we call the inter planetary network (IPN). The proposed IPN consists of thousands of small spacecraft (e.g. CubeSats) strategically deployed around planetary bodies in the solar system where each spacecraft is furnished with fast communications and sensor systems. The IPN concept is being proposed as an avant-garde science and communications platform that could allow for continuous fast communications and remarkable science returns. The IPN spacecraft, furnished with suitable miniaturized sensors, could form an amazing deep space platform for unique observation of the solar system, stars, galaxies and universe. A key feature of the IPN architecture is the use of swarms of spacecraft as network units. Super-high-speed intra-swarm communications could be achieved via omnidirectional optical links. The swarms act as autonomous network nodes and are capable of forming large synthetic apertures that enable high data rate communications among the IPN nodes. Depending on the sensors they carry, these swarms may also be capable of forming large synthetic sensors by rapidly combining data among the spacecraft. We envision distances between spacecraft forming a swarm to be in the range of 102-104 kilometers, whereas distances of 106-108 kilometers among swarms (IPN nodes) are expected. We provide an example of an initial IPN implementation in the inner solar system where swarms of spacecraft are deployed around the Earth, Moon, Mars, Venus and Mercury. Placing swarms around 3 Lagrange points per planet yield a total of 12 possible IPN network nodes. We present communications link calculations among IPN nodes that allow high data rate communications between Earth and Mars while Mars is in solar conjunction (behind the Sun). A second example of an IPN platforms includes a giant spaceborne radio telescope behind the moon.

Velazco, Jose E↗

Development of a prototype spatial information processing system for hydrologic research

Significant advances have been made in the last decade in the areas of Geographic Information Systems (GIS) and spatial analysis technology, both in hardware and software. Science user requirements are so problem specific that currently no single system can satisfy all of the needs. The work presented here forms part of a conceptual framework for an all-encompassing science-user workstation system. While definition and development of the system as a whole will take several years, it is intended that small scale projects such as the current work will address some of the more short term needs. Such projects can provide a quick mechanism to integrate tools into the workstation environment forming a larger, more complete hydrologic analysis platform. Described here are two components that are very important to the practical use of remote sensing and digital map data in hydrology. Described here is a graph-theoretic technique to rasterize elevation contour maps. Also described is a system to manipulate synthetic aperture radar (SAR) data files and extract soil moisture data.

Sircar, Jayanta K.↗

Quantitative analysis of surface characteristics and morphology in Death Valley, California using AIRSAR data

The Jet Propulsion Laboratory Airborne Synthetic Aperture Radar (JPL-AIRSAR) is used to collect full polarimetric measurements at P-, L-, and C-bands. These data are analyzed using the radar analysis and visualization environment (RAVEN). The AIRSAR data are calibrated using in-scene corner reflectors to allow for quantitative analysis of the radar backscatter. RAVEN is used to extract surface characteristics. Inversion models are used to calculate quantitative surface roughness values and fractal dimensions. These values are used to generate synthetic surface plots that represent the small-scale surface structure of areas in Death Valley. These procedures are applied to a playa, smooth salt-pan, and alluvial fan surfaces in Death Valley. Field measurements of surface roughness are used to verify the accuracy.

Kierein-Young, K. S.↗

Active/passive microwave sensor comparison of MIZ-ice concentration estimates

Active and passive microwave data collected during the 1984 summer Marginal Ice Zone Experiment in the Fram Strait (MIZEX 84) are used to compare ice concentration estimates derived from synthetic aperture radar (SAR) data to those obtained from passive microwave imagery at several frequencies. The comparison is carried out to evaluate SAR performance against the more established passive microwave technique, and to investigate discrepancies in terms of how ice surface conditions, imaging geometry, and choice of algorithm parameters affect each sensor. Active and passive estimates of ice concentration agree on average to within 12%. Estimates from the multichannel passive microwave data show best agreement with the SAR estimates because the multichannel algorithm effectively accounts for the range in ice floe brightness temperatures observed in the MIZ.

Burns, B. A.↗

Deep learning-accelerated 3D carbon storage reservoir pressure forecasting based on data assimilation using surface displacement from InSAR

Fast forecasting of the reservoir pressure distribution during geologic carbon storage (GCS) by assimilating monitoring data is a challenging problem. Due to high drilling cost, GCS projects usually have spatially sparse measurements from few wells, leading to high uncertainties in reservoir pressure prediction. To address this challenge, we use low-cost Interferometric Synthetic-Aperture Radar (InSAR) data as monitoring data to infer reservoir pressure build up. We develop a deep learning-accelerated workflow to assimilate surface displacement maps interpreted from InSAR and to forecast dynamic reservoir pressure. Employing an Ensemble Smoother Multiple Data Assimilation (ES-MDA) framework, the workflow updates three-dimensional (3D) geologic properties and predicts reservoir pressure with quantified uncertainties. We use a synthetic commercial-scale GCS model with bimodally distributed permeability and porosity to demonstrate the efficacy of the workflow. A two-step CNN-PCA approach is employed to parameterize the bimodal fields. The computational efficiency of the workflow is boosted by two residual U-Net based surrogate models for surface displacement and reservoir pressure predictions, respectively. The workflow can complete data assimilation and reservoir pressure forecasting in half an hour on a personal computer.

25 ENERGY STORAGE↗