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At least 973 records · Page 54

Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction

TRIMER, Transcription Regulation Integrated with MEtabolic Regulation, is a genome-scale modeling pipeline targeting at metabolic engineering applications. Using TRIMER, regulated metabolic reactions can be effectively predicted by integrative modeling of metabolic reactions with a Transcription Factor (TF)-gene regulatory network (TRN), which is modeled via a Bayesian network (BN). In this paper, we focus on sensitivity analysis of metabolic flux prediction for uncertainty quantification of BN structures for TRN modeling in TRIMER. We propose a computational strategy to construct the uncertainty class of TRN models based on the inferred regulatory order uncertainty given transcriptomic expression data. With that, we analyze the prediction sensitivity of the TRIMER pipeline for the metabolite yields of interest. The obtained sensitivity analyses can guide Optimal Experimental Design (OED) to help acquire new data that can enhance TRN modeling and achieve specific metabolic engineering objectives, including metabolite yield alterations. Here we have performed small- and large-scale simulated experiments, demonstrating the effectiveness of our developed sensitivity analysis strategy for BN structure learning to quantify the edge importance in terms of metabolic flux prediction uncertainty reduction and its potential to effectively guide OED.

59 BASIC BIOLOGICAL SCIENCES↗

Assessing the Impact of Laurentide Ice-sheet Topography on Glacial Climate

Simulations of past climates require altered boundary conditions to account for known shifts in the Earth system. For the Last Glacial Maximum (LGM) and subsequent deglaciation, the existence of large Northern Hemisphere ice sheets caused profound changes in surface topography and albedo. While ice-sheet extent is fairly well known, numerous conflicting reconstructions of ice-sheet topography suggest that precision in this boundary condition is lacking. Here we use a high-resolution and oxygen-isotopeenabled fully coupled global circulation model (GCM) (GISS ModelE2-R), along with two different reconstructions of the Laurentide Ice Sheet (LIS) that provide maximum and minimum estimates of LIS elevation, to assess the range of climate variability in response to uncertainty in this boundary condition.We present this comparison at two equilibrium time slices: the LGM, when differences in ice-sheet topography are maximized, and 14 ka, when differences in maximum ice-sheet height are smaller but still exist. Overall, we find significant differences in the climate response to LIS topography, with the larger LIS resulting in enhanced Atlantic Meridional Overturning Circulation and warmer surface air temperatures, particularly over northeastern Asia and the North Pacific. These up- and downstream effects are associated with differences in the development of planetary waves in the upper atmosphere, with the larger LIS resulting in a weaker trough over northeastern Asia that leads to the warmer temperatures and decreased albedo from snow and sea-ice cover. Differences between the 14 ka simulations are similar in spatial extent but smaller in magnitude, suggesting that climate is responding primarily to the larger difference in maximum LIS elevation in the LGM simulations. These results suggest that such uncertainty in ice-sheet boundary conditions alone may significantly impact the results of paleoclimate simulations and their ability to successfully simulate past climates, with implications for estimating climate sensitivity to greenhouse gas forcing utilizing past climate states.

glaciology↗

Informing nuclear physics via machine learning methods with differential and integral experiments

Information from differential nuclear-physics experiments and theory is often too uncertain to accurately define nuclear-physics observables such as cross sections or energy spectra. Integral experimental data, representing the applications of these observables, are often more precise but depend simultaneously on too many of them to unambiguously identify issues in the observable with human expert analysis alone. Here, we explore how we can leverage physics knowledge gained from differential experimental data, nuclear theory, integral experiments, and neutron-transport calculations to better understand nuclear-physics observables in the context of the application area represented by integral experiments. We support this task with machine-learning methods to discern trends in a large amount of convoluted data. Differential and integral information was used in an analysis augmented by the random forest and the Shapley additive explanations metric. We chose as an application area one that is represented by criticality measurements and pulsed-sphere neutron-leakage spectra. We show one representative example ( 241 Pu fission observables) where the combination of differential and integral information allowed to resolve issues in data representing these observables. As a starting point, the machine learning (ML) algorithms highlighted several observables as leading potentially to bias in simulating integral experiments. Differential information, paired with sensitivity to integral quantities, allowed us then to pinpoint one specific observable ( 241 Pu fission cross section) as the main driver of bias. The comparison to integral experiments, on the other hand, allowed us to indicate a likely reliable experiment among several discrepant ones for this observables. In other cases (e.g., 239 Pu observables), we were not able to resolve the confounding introduced by integral experiments but instead highlighted the need for targeted new experiments and theory developments to better constrain the nuclear-physics space for the application area represented by integral experiments. We were able to combine information from differential experimental data, nuclear-physics theory, integral experiments, and neutron-transport simulations of the latter experiments with the help of the random forest algorithm and expert judgment. This combination of knowledge allows to improve our description of nuclear-physics observables as applied to a particular application area.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Efficient Distance-based Global Sensitivity Analysis for Terrestrial Ecosystem Modeling

Sensitivity analysis in terrestrial ecosystem modeling is important for understanding controlling processes, guiding model development, and targeting new observations to reduce parameter and prediction uncertainty. Complex and computationally expensive terrestrial ecosystem models (TEM) limit the number of ensemble simulations, requiring sophisticated and efficient methods to analyze sensitivities of multiple model responses to different types of parameter uncertainties. In this study, we propose a distance-based global sensitivity analysis (DGSA) method. DGSA first classifies model response samples into a small set of discrete classes and then calculates the distance between parameter frequency distributions in different classes to measure the parameter sensitivity. The principle is that, if the parameter distribution is the same in each class, then the model response is insensitive to the parameter, while a large difference in the distributions indicates the parameter is influential to the response. Built on this idea, DGSA can be applied to analyze sensitivity of a single and a group of responses to different kinds of parameter uncertainties including continuous, discrete and even stochastic. Besides the main-effect sensitivity from a single parameter, DGSA can also quantify the sensitivity from parameter interactions. Additionally, DGSA is computationally efficient which can use a small number of model evaluations to obtain an accurate and statistically significant result. We applied DGSA to two TEMs, one having eight parameters and three kinds of model responses, and the other having 47 parameters and a long-period response. We demonstrated that DGSA can be used for sensitivity problems with multiple responses and high-dimensional parameters efficiently.

Lu, Dan↗

Sensitivity of the Tropical Atmospheric Energy Balance to ENSO-Related SST Changes: Comparison of Climate Model Simulations to Observed Responses

This paper focuses on how fresh water and radiative fluxes over the tropical oceans change during ENSO warm and cold events and how these changes affect the tropical energy balance. At present, ENSO remains the most prominent known mode of natural variability at interannual time scales. While this natural perturbation to climate is quite distinct from possible anthropogenic changes in climate, adjustments in the tropical water and energy budgets during ENSO may give insight into feedback processes involving water vapor and cloud feedbacks. Although great advances have been made in understanding this phenomenon and realizing prediction skill over the past decade, our ability to document the coupled water and energy changes observationally and to represent them in climate models seems far from settled (Soden, 2000 J Climate). In a companion paper we have presented observational analyses, based principally on space-based measurements which document systematic changes in rainfall, evaporation, and surface and top-of-atmosphere (TOA) radiative fluxes. Here we analyze several contemporary climate models run with observed SSTs over recent decades and compare SST-induced changes in radiation, precipitation, evaporation, and energy transport to observational results. Among these are the NASA / NCAR Finite Volume Model, the NCAR Community Climate Model, the NCEP Global Spectral Model, and the NASA NSIPP Model. Key disagreements between model and observational results noted in the recent literature are shown to be due predominantly to observational shortcomings. A reexamination of the Langley 8-Year Surface Radiation Budget data reveals errors in the SST surface longwave emission due to biased SSTs. Subsequent correction allows use of this data set along with ERBE TOA fluxes to infer net atmospheric radiative heating. Further analysis of recent rainfall algorithms provides new estimates for precipitation variability in line with interannual evaporation changes inferred from the da Silva, Young, Levitus COADS analysis. The overall results from our analysis suggest an increase (decrease) of the hydrologic cycle during ENSO warm (cold) events at the rate of about 5 W/sq m per K of SST change. Model results agree reasonably well with this estimate of sensitivity. This rate is slightly less than that which would be expected for constant relative humidity over the tropical oceans. There remain, however, significant quantitative uncertainties in cloud forcing changes in the models as compared to observations. These differences are examined in relationship to model convection and cloud parameterizations Analysis of the possible sampling and measurement errors compared to systematic model errors is also presented.

Robertson, Franklin R.↗

Rigorous justification for the space–split sensitivity algorithm to compute linear response in Anosov systems

Ruelle gave a formula for linear response of transitive Anosov diffeomorphisms. Recently, practically computable realizations of Ruelle's formula have emerged that potentially enable sensitivity analysis of certain high-dimensional chaotic numerical simulations encountered in the applied sciences. In this paper, we provide full mathematical justification for the convergence of one such efficient computation, the space–split sensitivity, or S3, algorithm. In S3, Ruelle's formula is computed as a sum of two terms obtained by decomposing the perturbation vector field into a coboundary and a remainder that is parallel to the unstable direction. Such a decomposition results in a splitting of Ruelle's formula that is amenable to efficient computation. Here, we prove the existence of the S3 decomposition and the convergence of the computations of both resulting components of Ruelle's formula.

97 MATHEMATICS AND COMPUTING↗

Coupling Warm Rain With an Eddy Diffusivity/Mass Flux Parameterization: 2. Sensitivities and Comparison to Observations

Abstract This is the second part of the description and validation of the coupling of a warm‐rain microphysics scheme to a stochastic multi‐plume eddy‐diffusivity/mass‐flux parameterization. Part 1 provides the model description and initial validation of the parameterization in a single column model (SCM) against large eddy simulations. This manuscript provides additional comparisons against satellite observations of 500 unique simulation cases, an analysis of model parameter‐based sensitivities in those 500 cases, and an evaluation of the idealized LES case study paradigm for parameterization development. The SCM is forced by a weather reanalysis in the subtropical northeast Pacific region characterized by the stratocumulus‐to‐cumulus cloud transition. 18 scalar outputs are examined to identify the sensitivities to 22 of the model's parameters. The model is highly sensitive to parameters that determine the behavior of convective plumes, which collectively lead to the most sensitivity in 13 of the 18 outputs. Only a few parameters contribute sensitivities that are not highly correlated with those of other parameters. While forcing the model with two canonical field campaign cases results in similar picture of which parameters lead to high sensitivity in model outputs, the sensitivity magnitudes can be overestimated compared to when the model is forced by weather reanalyzes.

54 ENVIRONMENTAL SCIENCES↗

The use of variograms in remote sensing. I - Scene models and simulated images. II - Real digital images

Theoretical and empirical studies of variograms are presented. The sensitivity of variograms is studied through varyig parameters of scene models both in calculating explicit variograms and in simulating images. It is found that the heights of variograms are related to the proportion of an area covered by objects. It is shown that the range of influence of a variogram is related to the size of the objects in the scene and that the shape of the variogram becomes more rounded as the variance in the size distribution of objects increases. In the second part, empirically calculated variograms from real digital images are used to demonstrate these theoretical findings. These calculated variograms also show the periodicity in ground scenes and reveal anisotropy.

Woodcock, Curtis E.↗

Verification of Revised and Upcoming Nuclear Data Sensitivity MCNP Features [Poster]

Nuclear data is ubiquitous across nuclear applications. Improved nuclear data means more accurate simulations. Past focus on k eff caused compensating error and areas of unvalidated nuclear data. Sensitivity can be used to optimize experiments to focus on specific areas. Sensitivity capabilities must be expanded and improved to design multivariate experiments focused on nuclear data needs.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Calibration of reactive burn and Jones-Wilkins-Lee parameters for simulations of a detonation-driven flow experiment with uncertainty quantification

Here, uncertainties in the explosive-specific parameters of the Jones-Wilkins-Lee (JWL) equation of state (EOS) are carefully considered in hydrodynamic simulations of an explosive experiment to minimize the error in the flow prediction. Experimental data of the leading shock position in the transverse direction over time serves as the prediction metric for quantifying simulation prediction error. The uncertainty quantification technique, global sensitivity analysis, is utilized to determine the JWL parameters to which the transverse shock propagation is most sensitive. A polynomial response surface (PRS) is constructed in the space of the most influential JWL parameters, and the point of minimum error between the experimental data and the PRS yields calibrated JWL parameters for the experimental flow. The simulation results following the parameter calibration show good agreement with the experimental data. It was found that two significant parameters, the heat release per unit mass of reactant Q and JWL model exponent R 1 are strongly related, which makes it difficult to identify accurate values.

36 MATERIALS SCIENCE↗

F-14 modeling study

Preliminary results in the application of a closed loop pilot/simulator model to the analysis of some simulator fidelity issues are discussed in the context of an air to air target tracking task. The closed loop model is described briefly. Then, problem simplifications that are employed to reduce computational costs are discussed. Finally, model results showing sensitivity of performance to various assumptions concerning the simulator and/or the pilot are presented.

Levison, W. H.↗

Effects of climate and lifeform on dry matter yield (epsilon) from simulations using BIOME BGC

An ecosystem process simulation model, BIOME-BGC, is used in a sensitivity analysis to determine the factors that may cause the dry matter yield (epsilon) and annual net primary production to vary for different ecosystems. At continental scales, epsilon is strongly correlated with annual precipitation. At a single location, year-to-year variation in net primary production (NPP) and epsilon is correlated with either annual precipitation or minimum air temperatures. Simulations indicate that forests have lower epsilon than grasslands. The most sensitive parameter affecting forest epsilon is the total amount of living woody biomass, which affects NPP by increasing carbon loss by maintenance respiration. A global map of woody biomass should significantly improve estimates of global NPP using remote sensing.

Hunt, E. R., Jr.↗

Performance assessment of near-fault buildings subjected to physics-based simulated earthquake ground motions with fling step

The effects of the co-seismic static offset (known as fling step) and associated velocity pulses on civil structures have been difficult to study because the static offset is typically removed during the processing of earthquake ground motion records. Simulated ground motions contain fling features and require no processing; therefore, they create new opportunities for representing fling features in seismic hazard analysis and assessing their influence on the seismic demands on near-fault structures. We use physics-based fault rupture simulations to study the characteristics of ground motions with fling step and the sensitivity of the near-fault structural demands to strong fling features. We uncover that simulated ground motions with a large fling step tend to have higher spectral intensity than those without a fling step at the same rupture distance, especially at periods longer than 2 s. As a result, the structural demands on flexible buildings tend to be the most sensitive to the fling features. Statistical analysis suggests that the ground motion spectral shape (represented by spectral accelerations at multiple periods) is—in most cases—a sufficient predictor of the structural demands on near-fault low-rise and mid-rise buildings at locations that are susceptible to strong fling effects. Finally, ground motion record selection experiments reveal that representing the spectral shape features at periods that are most relevant to a given structure may be an effective strategy to reduce the bias in the estimated demands on near-fault long-period structures when the available database of records is considered deficient in fling features.

Fling step↗

Effects of Cloud Liquid-Phase Microphysical Processes in Mixed-Phase Cumuli Over the Tibetan Plateau

Numerical simulations often overpredict precipitation over the Tibetan Plateau (TP). To examine the factors causing precipitation overprediction, different parameterizations of liquid-phase microphysical processes (accretion, autoconversion, and entrainment-mixing) are implemented into the Morrison microphysics scheme to simulate a TP precipitation event in summer with the Weather Research and Forecasting (WRF) model. The general spatial distribution and temporal trend of precipitation are captured by all simulations, but the precipitation rate is overpredicted. The results from sensitivity experiments suggest that compared to other examined liquid-phase processes, the accretion process is more important in precipitation simulation over the TP region. Further investigation with the Heidke skill scores reveals that accretion parameterization that takes into account the raindrop size produces the most accurate results in terms of the total surface precipitation. This parameterization suppresses spurious accretion and does not produce liquid-phase precipitation until cloud droplets are big enough. Here, it is also confirmed that increasing the model resolution can reduce precipitation overprediction. Results from the case study are confirmed by the use of a one-month simulation.

54 ENVIRONMENTAL SCIENCES↗

Droughts in Wind and Solar Power: Assessing Climate Model Simulations for a Net‐Zero Energy Future

Abstract Understanding and predicting “droughts” in wind and solar power availability can help the electric grid operator planning and operation toward deep renewable penetration. We assess climate models' ability to simulate these droughts at different horizontal resolutions, ∼100 and ∼25 km, over Western North America and Texas. We find that these power droughts are associated with the high/low pressure systems. The simulated wind and solar power variabilities and their corresponding droughts during historical periods are more sensitive to the model bias than to the model resolution. Future climate simulations reveal varied future change of these droughts across different regions. Although model resolution does not affect the simulation of historical droughts, it does impact the simulated future changes. This suggests that regional response to future warming can vary considerably in high‐ and low‐resolution models. These insights have important implications for adapting power system planning and operations to the changing climate.

Liu, Xue [Department of Oceanography Texas A&amp,M↗

Man-systems evaluation of moving base vehicle simulation motion cues

A motion cue investigation program is reported that deals with human factor aspects of high fidelity vehicle simulation. General data on non-visual motion thresholds and specific threshold values are established for use as washout parameters in vehicle simulation. A general purpose similator is used to test the contradictory cue hypothesis that acceleration sensitivity is reduced during a vehicle control task involving visual feedback. The simulator provides varying acceleration levels. The method of forced choice is based on the theory of signal detect ability.

Kirkpatrick, M.↗

Can we use antipredator behavior theory to predict wildlife responses to high-speed vehicles?

Animals seem to rely on antipredator behavior to avoid vehicle collisions. There is an extensive body of antipredator behavior theory that have been used to predict the distance/time animals should escape from predators. These models have also been used to guide empirical research on escape behavior from vehicles. However, little is known as to whether antipredator behavior models are appropriate to apply to an approaching high-speed vehicle scenario. We addressed this gap by (a) providing an overview of the main hypotheses and predictions of different antipredator behavior models via a literature review, (b) exploring whether these models can generate quantitative predictions on escape distance when parameterized with empirical data from the literature, and (c) evaluating their sensitivity to vehicle approach speed using a simulation approach wherein we assessed model performance based on changes in effect size with variations in the slope of the flight initiation distance (FID) vs. approach speed relationship. The slope of the FID vs. approach speed relationship was then related back to three different behavioral rules animals may rely on to avoid approaching threats: the spatial, temporal, or delayed margin of safety. We used literature on birds for goals (b) and (c). Our review considered the following eight models: the economic escape model, Blumstein’s economic escape model, the optimal escape model, the perceptual limit hypothesis, the visual cue model, the flush early and avoid the rush (FEAR) hypothesis, the looming stimulus hypothesis, and the Bayesian model of escape behavior. We were able to generate quantitative predictions about escape distance with the last five models. However, we were only able to assess sensitivity to vehicle approach speed for the last three models. The FEAR hypothesis is most sensitive to high-speed vehicles when the species follows the spatial (FID remains constant as speed increases) and the temporal margin of safety (FID increases with an increase in speed) rules of escape. The looming stimulus effect hypothesis reached small to intermediate levels of sensitivity to high-speed vehicles when a species follows the delayed margin of safety (FID decreases with an increase in speed). The Bayesian optimal escape model reached intermediate levels of sensitivity to approach speed across all escape rules (spatial, temporal, delayed margins of safety) but only for larger (> 1 kg) species, but was not sensitive to speed for smaller species. Overall, no single antipredator behavior model could characterize all different types of escape responses relative to vehicle approach speed but some models showed some levels of sensitivity for certain rules of escape behavior. We derive some applied applications of our findings by suggesting the estimation of critical vehicle approach speeds for managing populations that are especially susceptible to road mortality. Overall, we recommend that new escape behavior models specifically tailored to high-speeds vehicles should be developed to better predict quantitatively the responses of animals to an increase in the frequency of cars, airplanes, drones, etc. they will face in the next decade.

54 ENVIRONMENTAL SCIENCES↗

A Nonintrusive Optical Approach to Characterize Heliostats in Utility-Scale Power Tower Plants: Camera Position Sensitivity Analysis

Optics plays a major role in the effectiveness of concentrating solar power (CSP) technologies. The nonintrusive optical (NIO) approach developed by the National Renewable Energy Laboratory uses uncrewed aircraft system (UAS)-based imaging to survey heliostats in a commercial-scale power tower CSP plant and characterize their optical errors. The image processing algorithm uses photogrammetry to calculate the camera position for each image frame, and the accuracy of the estimated optical errors is highly sensitive to the calculated camera position accuracy. In this study, we simulate a series of case studies in python to examine the impact of different parameters of the sensitivity of the camera calculation, including the number of facet corners used as control points for the photogrammetric calculation, precision error in the detected pixel locations of the facet corners in the image, and precision error of the canting and mounting positions of the facets of the heliostat. The case studies consider heliostat geometry based on three commercial designs to serve as representative examples of different possible sizes of heliostats that the NIO method could be applied to. The results show that increasing the number of control points can improve accuracy for heliostats with many facets, pixel precision has a significantly larger impact on camera calculation accuracy than facet canting and mounting errors, and the camera distance and focal length must be chosen to ensure adequate pixel accuracy on the heliostat surface depending on the size of heliostat. In conclusion, based on the results, recommendations for the allowable values of each parameter are provided to achieve the required NIO optical error estimation accuracy depending on the size of heliostat.

14 SOLAR ENERGY↗