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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 973 records · Page 54
All sourcesNASA NTRSDOE OSTI
DOE OSTI2014

Microlensing of sub-parsec massive binary black holes in lensed QSOs: Light curves and size-wavelength relation

Sub-parsec binary massive black holes (BBHs) have long been thought to exist in many QSOs but remain observationally elusive. In this paper, we propose a novel method to probe sub-parsec BBHs through microlensing of lensed QSOs. If a QSO hosts a sub-parsec BBH in its center, it is expected that the BBH is surrounded by a circumbinary disk, each component of the BBH is surrounded by a small accretion disk, and a gap is opened by the secondary component in between the circumbinary disk and the two small disks. Assuming such a BBH structure, we generate mock microlensing light curves for some QSO systems that host BBHs with typical physical parameters. We show that microlensing light curves of a BBH QSO system at the infrared-optical-UV bands can be significantly different from those of corresponding QSO system with a single massive black hole (MBH), mainly because of the existence of the gap and the rotation of the BBH (and its associated small disks) around the center of mass. We estimate the half-light radii of the emission region at different wavelengths from mock light curves and find that the obtained half-light radius versus wavelength relations of BBH QSO systems can be much flatter than those of single MBH QSO systems at a wavelength range determined by the BBH parameters, such as the total mass, mass ratio, separation, accretion rates, etc. The difference is primarily due to the existence of the gap. Such unique features on the light curves and half-light radius-wavelength relations of BBH QSO systems can be used to select and probe sub-parsec BBHs in a large number of lensed QSOs to be discovered by current and future surveys, including the Panoramic Survey Telescope and Rapid Response System, the Large Synoptic Survey telescope, and Euclid.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

'Self-absorbed' GeV light curves of gamma-ray burst afterglows

We investigate the effect that the absorption of high-energy (above 100 MeV) photons produced in gamma-ray burst afterglow shocks has on the light curves and spectra of Fermi Large Area Telescope (LAT) afterglows. Afterglows produced by the interaction of a relativistic outflow with a wind-like medium peak when the blast wave deceleration sets in, and the afterglow spectrum could be hardening before that peak, as the optical thickness to pair formation is decreasing. In contrast, in afterglows produced in the interaction with a homogeneous medium, the optical thickness to pair formation should increase and yield a light curve peak when it reaches unity, followed by a fast light curve decay, accompanied by spectral softening. If energy is injected in the blast wave, then the accelerated increase of the optical thickness yields a convex afterglow light curve. Other features, such as a double-peak light curve or a broad hump, can arise from the evolution of the optical thickness to photon-photon absorption. Fast decays and convex light curves are seen in a few LAT afterglows, but the expected spectral softening is rarely seen in (and difficult to measure with) LAT observations. Furthermore, for the effects of photon-photon attenuation to shape the high-energy afterglow light curve without attenuating it too much, the ejecta initial Lorentz factor must be in a relatively narrow range (50-200), which reduces the chance of observing those effects.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

ACTIVE-REGION TILT ANGLES: MAGNETIC VERSUS WHITE-LIGHT DETERMINATIONS OF JOY'S LAW

The axes of solar active regions are inclined relative to the east-west direction, with the tilt angle tending to increase with latitude ({sup J}oy's law{sup )}. Observational determinations of Joy's law have been based either on white-light images of sunspot groups or on magnetograms, where the latter have the advantage of measuring directly the physically relevant quantity (the photospheric field), but the disadvantage of having been recorded routinely only since the mid-1960s. White-light studies employing the historical Mount Wilson (MW) database have yielded tilt angles that are smaller and that increase less steeply with latitude than those obtained from magnetic data. We confirm this effect by comparing sunspot-group tilt angles from the Debrecen Photoheliographic Database with measurements made by Li and Ulrich using MW magnetograms taken during cycles 21-23. Whether white-light or magnetic data are employed, the median tilt angles significantly exceed the mean values, and provide a better characterization of the observed distributions. The discrepancy between the white-light and magnetic results is found to have two main sources. First, a substantial fraction of the white-light ''tilt angles'' refer to sunspots of the same polarity. Of greater physical significance is that the magnetograph measurements include the contribution of plage areas, which are invisible in white-light images but tend to have greater axial inclinations than the adjacent sunspots. Given the large uncertainties inherent in both the white-light and the magnetic measurements, it remains unclear whether any systematic relationship exists between tilt angle and cycle amplitude during cycles 16-23.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

The differences between mass- and light-derived structural parameters over time for MaNGA elliptical galaxies

ABSTRACT We apply stellar population synthesis analysis to obtain spatially resolved archaeological inferences for a large sample of ‘red and dead’ Elliptical galaxies (Classical Ellipticals, CLEs) from the MaNGA/SDSS-IV DR15 survey. From their 2D stellar light and mass maps, we explore the differences between the radial mass and light distributions in the rest-frame bands g, r, and i as functions of look-back time, tlb, or redshift, z. We characterize these differences through the ratios between the following mass- and light-derived global properties: sizes, concentrations, and effective surface densities. We find that the mass-to-light ratios of these properties change with tlb, more the more massive the galaxies are. The CLE galaxy archaeological progenitors are, on average, less compact, concentrated, and dense in light than in mass as z decreases. However, at later times, when also the evolution of the progenitors becomes passive at all radii, there is an upturn in these trends and the differences between mass and light in compactness/concentration decrease towards z ∼ 0. The trends in the ratios of mass-to-light sizes agree qualitatively with results from direct observations in galaxy surveys at different redshifts. We discuss the caveats and interpretations of our results, and speculate that the strong structural evolution found in some previous studies for early-type galaxies could be explained partially by photometric changes rather than by intrinsic structural changes.

Ibarra-Medel, H. (ORCID:0000000297906313)↗
DOE OSTI2022

RRab variables with identical light-curve shapes at different pulsation periods

In this paper, we report on the detection of RRab stars with quasi-identical-shape light curves but period differences as large as 0.05–0.21 d using the Galactic bulge data of the OGLE-IV survey. We have examined stars with shorter periods than the Oosterhoff I ridge of the bulge. These stars generally have smaller amplitudes and larger Fourier phase-differences than the typical bulge RRab stars have at the same period. Many of these ‘anomalous’ stars have good-quality light curves without any sign of the Blazhko modulation. Examining their Fourier parameters revealed that several of these stars show very similar light curve to the typical bulge RR Lyrae. We found hundreds of quasi-identical-shape light-curve pairs with different periods between the ‘anomalous’- and the ‘normal’-position RRab stars based on the OGLE I-band data. The OGLE V-band, and the archive VVV and MACHO surveys K s -, b- and r -band data of these stars were also checked for light-curve-shape similarity. Finally, 149 pairs with identical-shape light curves in each available photometric band were identified. Calculating the physical properties of the variables using empirical formulae, on average, −0.5 dex, −0.13 mag, 0.67, and 165 K differences between the [Fe/H], M V , R/R ⊙ , and T eff values of the members of the pairs are derived, being the short-period stars less metal-poor, fainter, smaller, and hotter than the long-period variables. To explain the existence of variables with different physical properties and pulsation periods but with identical-shape light curves is a challenging task for modelling.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Calorimetry for low-energy electrons using charge and light in liquid argon

Precise calorimetric reconstruction of 5–50 MeV electrons in liquid argon time projection chambers (LArTPCs) will enable the study of astrophysical neutrinos in DUNE and could enhance the physics reach of oscillation analyses. Liquid argon scintillation light has the potential to improve energy reconstruction for low-energy electrons over charge-based measurements alone. Here we demonstrate light-augmented calorimetry for low-energy electrons in a single-phase LArTPC using a sample of Michel electrons from decays of stopping cosmic muons in the LArIAT experiment at Fermilab. Michel electron energy spectra are reconstructed using both a traditional charge-based approach as well as a more holistic approach that incorporates both charge and light. A maximum-likelihood fitter, using LArIAT’s well-tuned simulation, is developed for combining these quantities to achieve optimal energy resolution. A sample of isolated electrons is simulated to better determine the energy resolution expected for astrophysical electron-neutrino charged-current interaction final states. In LArIAT, which has very low wire noise and an average light yield of 18 pe/MeV, an energy resolution of σ/E≃9.3%/E⊕1.3% is achieved. Samples are then generated with varying wire noise levels and light yields to gauge the impact of light-augmented calorimetry in larger LArTPCs. At a charge-readout signal-to-noise of S/N≃30, for example, the energy resolution for electrons below 40 MeV is improved by ≈10%, ≈20%, and ≈40% over charge-only calorimetry for average light yields of 10 pe/MeV, 20 pe/MeV, and 100 pe/MeV, respectively.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2025

Self-compensating light calorimetry with liquid argon time projection chamber for GeV neutrino physics

The Liquid Argon Time Projection Chamber (LArTPC) is a powerful dual calorimeter capable of estimating particle energy from both ionization charge and scintillation light. Here, our study shows that, due to the recombination luminescence, the LArTPC functions as a self-compensating light calorimeter: the missing energy in the hadronic component is compensated for by the increased luminescence relative to the electromagnetic component. Using 0.5-5 GeV electron neutrino charged current interactions as a case study, we show that good compensation of the electron-to-hadron response ratio (e/h) from 1-1.05 can be achieved across a broad range of drift electric fields (0.2-1.8 kV / cm), with better performance for neutrino energies above 2 GeV. This study highlights the potential of light calorimetry in LArTPCs for GeV neutrino energy reconstruction, complementing traditional charge calorimetry. Under ideal conditions of uniform light collection, we show that LArTPC light calorimetry can achieve an energy resolution comparable to the charge imaging calorimetry. Challenges arising from nonuniform light collection in large LArTPCs can be mitigated with a position-dependent light yield correction derived from 3D charge signal imaging.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa

Rapid responses to changes in incident light are critical to the guidance of behavior and development in most species. Phytochrome light receptors in particular play key roles in bacterial physiology and plant development, but their functions and regulation are less well understood in fungi. Nevertheless, genome-wide expression measurements provide key information that can guide experiments that reveal how genes respond to environmental signals and clarify their role in development. We performed functional genomic and phenotypic analyses of the two phytochromes in Neurospora crassa, a fungal model adapted to a postfire environment that experiences dramatically variable light conditions. Expression of phy-1 and phy-2 was low in early sexual development and in the case of phy-2 increased in late sexual development. Under light stimulation, strains with the phytochromes deleted exhibited increased expression of sexual development-related genes. Moreover, under red light, the phy-2 knockout strain commenced sexual development early. In the evolution of phytochromes within ascomycetes, at least two duplications have occurred, and the faster-evolving phy-2 gene has frequently been lost. Additionally, the three key cysteine sites that are critical for bacterial and plant phytochrome function are not conserved within fungal phy-2 homologs. Through the action of phytochromes, transitions between asexual and sexual reproduction are modulated by light level and light quality, presumably as an adaptation for fast asexual growth and initiation of sexual reproduction of N. crassa in exposed postfire ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Color Confinement, Hadron Dynamics, and Hadron Spectroscopy from Light-Front Holography and Superconformal Algebra

The QCD light-front Hamiltonian equation H L F Ψ = M 2 Ψ derived from quantization at fixed LF time τ = t + z / c provides a causal, frame-independent method for computing hadron spectroscopy as well as dynamical observables such as structure functions, transverse momentum distributions, and distribution amplitudes. The QCD Lagrangian with zero quark mass has no explicit mass scale. de Alfaro, Fubini, and Furlan (dAFF) have made an important observation that a mass scale can appear in the equations of motion without affecting the conformal invariance of the action if one adds a term to the Hamiltonian proportional to the dilatation operator or the special conformal operator. If one applies the dAFF procedure to the QCD light-front Hamiltonian, it leads to a color-confining potential κ 4 ζ 2 for mesons, where ζ 2 is the LF radial variable conjugate to the q q ¯ invariant mass squared. The same result, including spin terms, is obtained using light-front holography, the duality between light-front dynamics and A d S 5 , if one modifies the A d S 5 action by the dilaton e κ 2 z 2 in the fifth dimension z . When one generalizes this procedure using superconformal algebra, the resulting light-front eigensolutions provide a unified Regge spectroscopy of meson, baryon, and tetraquarks, including remarkable supersymmetric relations between the masses of mesons and baryons and a universal Regge slope. The pion q q ¯ eigenstate has zero mass at m q = 0 . The superconformal relations also can be extended to heavy-light quark mesons and baryons. This approach also leads to insights into the physics underlying hadronization at the amplitude level. I will also discuss the remarkable features of the Poincaré invariant, causal vacuum defined by light-front quantization and its impact on the interpretation of the cosmological constant. AdS/QCD also predicts the analytic form of the nonperturbative running coupling α s ( Q 2 ) ∝ e - Q 2 / 4 κ 2 . The mass scale κ underlying hadron masses can be connected to the parameter Λ M S ¯ in the QCD running coupling by matching the nonperturbative dynamics to the perturbative QCD regime. The result is an effective coupling α s ( Q 2 ) defined at all momenta. One obtains empirically viable predictions for spacelike and timelike hadronic form factors, structure functions, distribution amplitudes, and transverse momentum distributions. Finally, I address the interesting question of whether the momentum sum rule is valid for nuclear structure functions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Snapshot multifocal light field microscopy

Light field microscopy (LFM) is an emerging technology for high-speed wide-field 3D imaging by capturing 4D light field of 3D volumes. However, its 3D imaging capability comes at a cost of lateral resolution. In addition, the lateral resolution is not uniform across depth in the light field dconvolution reconstructions. To address these problems, here, we propose a snapshot multifocal light field microscopy (MFLFM) imaging method. The underlying concept of the MFLFM is to collect multiple focal shifted light fields simultaneously. We show that by focal stacking those focal shifted light fields, the depth-of-field (DOF) of the LFM can be further improved but without sacrificing the lateral resolution. Also, if all differently focused light fields are utilized together in the deconvolution, the MFLFM could achieve a high and uniform lateral resolution within a larger DOF. We present a house-built MFLFM system by placing a diffractive optical element at the Fourier plane of a conventional LFM. The optical performance of the MFLFM are analyzed and given. Both simulations and proof-of-principle experimental results are provided to demonstrate the effectiveness and benefits of the MFLFM. We believe that the proposed snapshot MFLFM has potential to enable high-speed and high resolution 3D imaging applications.

He, Kuan↗
DOE OSTI2014

Creation of a U.S. Phosphorescent OLED Lighting Panel Manufacturing Facility

Universal Display Corporation (UDC) has pioneered high efficacy phosphorescent OLED (PHOLED™) technology to enable the realization of an exciting new form of high quality, energy saving solid-date lighting. In laboratory test devices, we have demonstrated greater than 100 lm/W conversion efficacy. In this program, Universal Display will demonstrate the scalability of its proprietary UniversalPHOLED technology and materials for the manufacture of white OLED lighting panels that meet commercial lighting targets. Moser Baer Technologies will design and build a U.S.- based pilot facility. The objective of this project is to establish a pilot phosphorescent OLED (PHOLED) manufacturing line in the U.S. Our goal is that at the end of the project, prototype lighting panels could be provided to U.S. luminaire manufacturers for incorporation into products to facilitate the testing of design concepts and to gauge customer acceptance, so as to facilitate the growth of the embryonic U.S. OLED lighting industry. In addition, the team will provide a cost of ownership analysis to quantify production costs including OLED performance metrics which relate to OLED cost such as yield, materials usage, cycle time, substrate area, and capital depreciation. This project was part of a new DOE initiative designed to help establish and maintain U.S. leadership in this program will support key DOE objectives by showing a path to meet Department of Energy Solid-State Lighting Manufacturing Roadmap cost targets, as well as meeting its efficiency targets by demonstrating the energy saving potential of our technology through the realization of greater than 76 lm/W OLED lighting panels by 2012.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2016

Two-Column Aerosol Project: Aerosol Light Extinction Measurements Field Campaign Report

We deployed Aerodyne Research Inc.’s first Cavity Attenuated Phase Shift extinction (CAPS PMex) monitor (built by Aerodyne) that measures light extinction by using a visible-light-emitting diode (LED) as a light source, a sample cell incorporating two high-reflectivity mirrors centered at the wavelength of the LED, and a vacuum photodiode detector in Cape Cod in 2012/13 for the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility’s Two-Column Aerosol Project (TCAP). The efficacy of this instrument is based on the fact that aerosols are broadband scatterers and absorbers of light. The input LED is square-wave modulated and passed through the sample cell that distorts it due to exponential decay by aerosol light absorption and scattering; this is measured at the detector. The amount of phase shift of the light at the detector is used to determine the light extinction. This extinction measurement provides an absolute value, requiring no calibration. The goal was to compare the CAPS performance with direct measurements of absorption with ARM’s baseline photoacoustic soot spectrometer (PASS-3) and nephelometer instruments to evaluate its performance.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

A Demonstration of Light-Augmented Calorimetry For Low-Energy Electrons in Liquid Argon.

The ability to resolve electrons with energies as low as 5 MeV in liquid argon (LAr) is important for future studies of astrophysical neutrinos in liquid argon time projection chambers (LArTPCs). Existing methods for measuring the energy of electromagnetic showers in LArTPCs rely solely on charge-based reconstruction which requires correcting for assumed electron-ion recombination. However, LAr scintillation light has the potential to improve energy reconstruction over charge-based measurements alone. Here we present a demonstration of a light-augmented calorimetric technique for low-energy electrons in LAr that foregoes the need to correct for recombination. A sample of Michel electrons from stopping cosmic muons is collected in LArIAT (Liquid Argon In A Testbeam), a single-phase LArTPC at Fermilab’s Test Beam Facility. Michel electron energy spectra are reconstructed using both a traditional charge-based approach as well as a more holistic approach that incorporates both charge and light. A maximum-likelihood fitter, using LArIAT’s well-tuned simulation, is developed for combining these quantities to achieve optimal energy resolution. A sample of isolated electrons with Ee < 60 MeV is then simulated to better determine the energy resolution of this topology. Due to LArIAT’s low wire noise, the addition of light is not found to significantly improve upon the achieved charged-based resolution of σ/E ≃ 9%/√E ⊕ 1%. However, additional samples are generated with varying wire noise levels and light yields to gauge the impact of light-augmented calorimetry in large LArTPCs such as DUNE and SBND. At a charge-readout signal-to-noise of ≈10, the energy resolution for low-energy electrons is improved by ∼15%, ∼25%, and ∼45% over charge-only calorimetry for average light yields of 10, 20, and 100 pe/MeV, respectively.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2019

Final Report: Development of High Light Output Plastic Scintillating and Wavelength-Shifting Fibers

Scintillating plastic optical fibers have increasingly been used as radiation detectors in nuclear and high energy physics research since they were first made in 1965. It is proposed to make fibers which are at least a factor of 2 brighter and thereby improve detection efficiency, spatial resolution and energy resolution. When radiation strikes existing plastic scintillator only the singlet excited states rather than the triplet excited states are used to produce scintillation light. This means only 25% of the deposited energy is available to produce scintillation light. Utilization of phosphorescent molecules should therefore drastically improve the light output. This process has been called “triplet harvesting” and has been successfully demonstrated in improving the light output of “Organic Light Emitting Diodes, OLEDs”. The objective of this proposal is to produce a bright scintillating fiber using triplet harvesting and a light output time constant of a few nanoseconds. In addition, an increase in the light containment will be achieved by using a new low refractive index cladding material. In Phase 1, polystyrene plastic material will be used. Organo-metallic phosphorescent and conventional dyes will be dissolved in the plastic to demonstrate both the desired brightness and fast decay time. Photophysical properties will be measured. Scintillating fiber will be made. Commercial benefits of this new material include providing improved detection of rare events such as the HIGGS BOSON at the billion dollar high energy facilities. and monitoring stored radioactive material. The new material will also play an important role in making improved imaging detection facilities for protecting civilians and facilities against CBRN-E threats. In addition, the resolution will be improved for medical brachytherapy. The results of selected organic dyes dissolved in a polystyrene matrix performing as scintillating samples are presented. The proposed organo-metallic phosphorescent dyes were not used due to lengthy synthesis times and cost. Rather, an attempt was made to harvest triplet energy from polystyrene using appropriately wavelength-matched dyes. Samples studied include films and blocks. Fibers were not manufactured as a suitable set of dyes was not determined.

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2018

Low-Cost Scaffold-Reinforced Perovskite Solar Modules with Integrated Light Management

Perovskite solar cells are a promising new solar technology because they are highly efficient and cheaper to manufacture compared to silicon solar cells. However, perovskites suffer from mechanical and thermal fragility, important factors limiting device lifetimes, which leads to problems in making reliable solar cells. In our recent work, we showed how to make perovskite solar cells that look like the eye of a fly by subdividing a solar cell into thousands of microcells that are surrounded by a honeycomb-shaped reinforcing scaffold. This discovery was a new architecture called a compound solar cell (CSC). The perovskite is effectively shielded from mechanical forces by the scaffold and leads to robust solar cells that are no longer fragile. This was a promising advancement, but the drawback of the scaffold structure is that the scaffold absorbs light from the solar cell and leads to a reduced efficiency. In this project, we address this reduced efficiency by integrating concentrating lens arrays into CSCs to focus any incident light away from the scaffolds. Perovskite is deposited into the microcells between these scaffolds, and upon sunlight exposure, the lenses concentrate light into the microcells and away from the insulating scaffolds, resulting in significantly improved efficiencies. The lenses redirect over 90% of the light that otherwise would have been incident on the scaffolds into the microcells leading to a corresponding 90% recovery of efficiency. Furthermore, the lenses show passive light tracking capabilities, meaning as the angle of incident light changes (simulating how the sunlight moves across the sky during the course of the day), a majority of the light is still focused into the perovskite microcells. The improved efficiency and passive tracking capabilities suggest that lens-integrated CSCs are a potential pathway to high-performance, robust, commercially viable perovskite solar cells.

14 SOLAR ENERGY↗
DOE OSTI2020

Probing Coherent States of Light and Matter in Two-Dimensional Semiconductors. Final Report

The ability to enhance light-matter interactions in engineered optical environments is well-established in micro- and nano-photonics. New classes of materials bring new rich correlations between spin, momentum, and light polarization that can be exploited in these photonic systems for information processing and low-power electronics. Interfacing these novel material features with strong optical interactions suggests the compelling capability to create hybrid light-matter systems harnessing low-energy and protected material properties such as spin. The long-term objective of this program was to investigate the interplay between pseudospin in 2D materials and light, revealing new coherent phenomena. The materials studied are the monolayer transition metal dichalcogenides (TMDs), which support polarization-sensitive optical transitions when isolated to a single sub-nanometer crystal layer in thickness. In particular, monolayer TMD semiconductors such as MoS 2 exhibit degenerate valleys in momentum space with distinct spin character. These valleys can be separately addressed by circularly polarized light, providing a tool for manipulation. Integrating this valley pseudospin of excitons in monolayer TMDs with engineered strong optical excitations to create novel coherent phenomena was a key long-term goal of this research. The scope of this research primarily focused on studying light-matter interactions of valley-sensitive excitations in monolayer TMDs. The scope also included the integration of monolayer materials that support valley-polarized emission into photonic devices. This approach extends prior work on exciton-polaritons in 2D materials toward a platform with far more control and improved light input and output characteristics to aid scalability of these polarization-sensitive phenomena to many-body, long-range optical networks. During the course of the five-year Early Career program, the approaches led to successful progress on each proposed aim. Initial successful work seeded additional research that developed from the main themes, while this program focus evolved toward coherent manipulation of valley polaritons and integration with photonics. Both of these advanced topics set the stage for new capabilities in future innovative research. The results of this project provide advances in materials and methods relevant for new visions of opto-electronics and photonics that can improve information processing in an era of increased focus on quantum and coherent phenomena. The research has also contributed to the training of two postdoctoral scholars and five graduate students.

2D Materials↗
DOE OSTI2015

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat

Genomes were obtained for three closely related strains of Synechococcus that are representative of putative ecotypes (PEs) that predominate at different depths in the 1 mm-thick, upper-green layer in the 60°C mat of Mushroom Spring, Yellowstone National Park, and exhibit different light adaptation and acclimation responses. The genomes were compared to the published genome of a previously obtained, closely related strain from a neighboring spring, and differences in both gene content and orthologous gene alleles between high-light-adapted and low-light-adapted strains were identified. Evidence of genetic differences that relate to adaptation to light intensity and/or quality, CO 2 uptake, nitrogen metabolism, organic carbon metabolism, and uptake of other nutrients were found between strains of the different putative ecotypes. In situ diel transcription patterns of genes, including genes unique to either low-light-adapted or high-light-adapted strains and different alleles of an orthologous photosystem gene, revealed that expression is fine-tuned to the different light environments experienced by ecotypes prevalent at various depths in the mat. This study suggests that strains of closely related PEs have different genomic adaptations that enable them to inhabit distinct ecological niches while living in close proximity within a microbial community.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Out of the Dark and Into the Light: A New View of Phytochrome Photobodies

Light is a critical environmental stimulus for plants, serving as an energy source via photosynthesis and a signal for developmental programming. Plants perceive light through various light-responsive proteins, termed photoreceptors. Phytochromes are red-light photoreceptors that are highly conserved across kingdoms. In the model plant Arabidopsis thaliana , phytochrome B serves as a light and thermal sensor, mediating physiological processes such as seedling germination and establishment, hypocotyl growth, chlorophyll biogenesis, and flowering. In response to red light, phytochromes convert to a biologically active form, translocating from the cytoplasm into the nucleus and further compartmentalizes into subnuclear compartments termed photobodies. PhyB photobodies regulate phytochrome-mediated signaling and physiological outputs. However, photobody function, composition, and biogenesis remain undefined since their discovery. Based on photobody cellular dynamics and the properties of internal components, photobodies have been suggested to undergo liquid-liquid phase separation, a process by which some membraneless compartments form. Here, we explore photobodies as environmental sensors, examine the role of their protein constituents, and outline the biophysical perspective that photobodies may be undergoing liquid-liquid phase separation. Understanding the molecular, cellular, and biophysical processes that shape how plants perceive light will help in engineering improved sunlight capture and fitness of important crops.

54 ENVIRONMENTAL SCIENCES↗