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NASA NTRSDate not supplied

Machine Learning Algorithms for Aerosol and Cloud Detection Using CATS on the ISS

Clouds and aerosols are one of the largest uncertainties in understanding and forecasting the Earth’s changing climate system. The type and height of aerosols are important factors in determining the top-of-atmosphere (TOA) radiation budget, either direct reflection of solar radiation back to space and/or absorption of solar radiation. In addition to their impact on the Earth’s climate system, aerosols near the surface from wildfires, man-made pollution events, and dust storms are hazardous to human health. The phase and height of clouds also play a critical role in determining the role of clouds in the Earth’s climate system. Cirrus clouds in the upper troposphere can induce a significant daytime TOA warming effect, while liquid water clouds near the surface cause a large corresponding cooling effect. Lidar measurements provide accurate vertically resolved information about clouds and aerosols, including complex multi-layer scenes where passive sensors are challenged and at night, when passive sensors are unable to measure cloud and aerosol properties. The Cloud-Aerosol Transport System (CATS) is a lidar instrument that operated for 33 months on the International Space Station (ISS) at the 1064 nm wavelength to measure attenuated total backscatter and depolarization ratio. These fundamental measurements are used to derive “vertical feature mask” cloud and aerosol products, including layer top/base heights, layer geometrical thickness, aerosol type, and cloud phase. While space-based lidar systems like CATS provide cloud and aerosol vertical distributions that improve our understanding of the climate system, averaging of the daytime data from these sensors is required, at the expense of spatial resolution, to improve the daytime signal-to noise (SNR) and thus atmospheric layer detection. This presentation shows results from machine learning (ML) techniques that, when applied to CATS data: 1. improve the 1064 nm SNR 2. enable detection of atmospheric features during daytime with a horizontal resolution of 350 m or 5 km (compared to the 60 km required for standard CATS data products) 3. increase the number of atmospheric layers detected in the CATS data. A Convolutional Neural Network (CNN) trained using CATS standard data products also demonstrated the potential for improved cloud-aerosol discrimination, cloud phase, and aerosol typing compared to the operational CATS algorithms for cloud edges and complex near-surface scenes during daytime. The ML tools described in this paper can facilitate the development of smaller, low-cost lidar systems in the future and enable real-time accessibility of lidar data products from future lidar systems for monitoring and forecasting of hazardous events.

John Yorks↗

NASA NTRS2021

Planetary Boundary Layer Height Estimates From ICESat-2 and CATS Backscatter Measurements

The lowest layer of the atmosphere in which all human activity occurs is called the Planetary Boundary Layer (PBL). All physical interactions with the surface, such as heat and moisture transport, pollution dispersion and transport happen in this relatively shallow layer. The ability to understand and model the complex interactions that occur in the PBL is very important to air quality, weather prediction and climate modeling. A fundamental and physically important property of the PBL is its thickness or height. This work presents two methods to obtain global PBL height using satellite lidar data from the Ice, Cloud and land Elevation Satellite-2 (ICESat-2) and the Cloud-Aerosol Transport System (CATS). The first method is a straightforward backscatter threshold technique and the second is a machine learning approach known as a Convolutional Neural Network. The PBL height retrievals from the two methods are compared with each other and with PBL height from the NASA GEOS MERRA-2 reanalysis. The lidar-retrieved PBL heights have a high degree of spatial correlation with the model heights but are generally higher over ocean (∼400 m) and over northern hemisphere high latitude regions (∼1,000 m). Over mid-latitude and tropical land areas, the satellite estimated PBL heights agree well with model mid-day estimates. This work demonstrates the feasibility of using satellite lidar backscatter measurements to obtain global PBL height estimates, as well as determining seasonal and regional variability of PBL height.

Stephen P Palm↗

NASA NTRS2022

Spatial Grid-Based Object Localization from A Single Passive Sensor: A Deep Learning-Integrated Approach

Ongoing efforts at NASA’s Langley Research Center have produced a single passive sensor system for detecting ground objects and pinpointing their real-world location to a desired level of precision. The Langley center serves as a test range for unmanned aerial systems (UAS) and real-time knowledge about the location of people on campus is needed to inform least-risk UAS flight operations. The proposed system provides this knowledge through a camera combined with a convolutional neural network and an algorithm that projects an imaginary grid of square cells from the ground plane onto the perspective view of the camera. The position of detected objects on the camera’s projected grid determines their location in the real-world. The imaginary grid is easily mapped to a universal coordinate system, such as longitude and latitude, to provide both relative and absolute positional information of the detected objects. This simple system is shown to be accurate and effective, with decisive advantages over alternative multi-sensor and active sensor approaches. Extensions to the system are described to allow adaptation to a variety of other use cases.

object localization↗

NASA NTRS2021

Exploring Sentinel-1 and Sentinel-2 diversity for Flood inundation mapping using deep learning

Identification of flood water extent from satellite images has historically relied on either synthetic aperture radar (SAR) or multi-spectral (MS) imagery. MS sensors are limited to cloud free conditions, whereas SAR imagery is plagued by noise-like speckle. Prior studies that use combinations of MS and SAR data to overcome individual limitations of these sensors have not fully examined sensitivity of flood mapping performance to different combinations of SAR and MS derived spectral indices or band transformations in color space. This study explores the use of diverse bands of Sentinel 2 (S2) through well-established water indices and Sentinel 1 (S1) derived SAR imagery along with their combinations to assess their capability for generating accurate flood inundation maps. The robustness in performance of S-1 and S-2 band combinations was evaluated using 446 hand labeled flood inundation images spanning across 11 flood events from Sen1Floods11 dataset which are highly diverse in terms of land cover as well as location. A modified K-fold cross validation approach is used to evaluate the performance of 32 combinations of S1 and S2 bands using a fully connected deep convolutional neural network known as U-Net. Our results indicated that usage of elevation information has improved the capability of S1 imagery to produce more accurate flood inundation maps. Compared to a median F1 score of 0.62 when using only S1 bands, the combined use of S1 and elevation information led to an improved median F1 score of 0.73. Water extraction indices based on S2 bands have a statistically significant superior performance in comparison to S1. Among all the band combinations, HSV (Hue, Saturation, Value) transformation of S2 bands provides a median F1 score of 0.9, outperforming the commonly used water spectral indices owing to HSV’s transformation’s superior contrast distinguishing abilities. Additionally, U-Net algorithm was able to learn the relationship between raw S2 based water extraction indices and their corresponding raw S2 bands, but not of HSV owing to relatively complex computation involved in the latter. Results of the paper establishes important benchmarks for the extension of S1 and S2 data-based flood inundation mapping efforts over large spatial extents.

Goutam Konapala↗

NASA NTRS2020

Object and Gas Source Detection with Robotic Platforms in Perceptually-Degraded Environments

In exploration-oriented robotic missions for disaster relief in unknown subterranean environments, it is of prime importance for a human supervisor to rapidly gain situational awareness of salient objects within the environment. In this paper we present an automated object detection pipeline that is adaptable to heterogeneous robots with arbitrary sensor configurations. It has been deployed in time-critical scenarios with multiple collaborative robots in a variety of demanding underground environments. For visually observable objects, detections are made in both the visible and thermal spectra using a state-of-the-art machine learning framework for object detection and classification. Our pipeline can be rapidly adapted to a specific task by using a small, structured dataset to fine-tune a pre-trained convolutional neural network (CNN). Relative localization is separated from the CNN for speed of operation. A robust architecture for localization is used with outlier rejection and a hierarchy of fall-back distance measurement methods. Point-source objects such as gas and WiFi hotspots can also be detected, by tracking signal strength over time and presenting an intuitive visualization on a map. Observations of each object types are presented to the operator in ranked confidence order for final evaluation.

Agha-mohammadi, Ali-akbar↗

NASA NTRS2022

Pre-trained Microscopy Models for Segmentation and Microstructure Quantification

We introduce pre-trained convolutional neural network (CNN) models for quantitative microscopy analysis. Pre-trained weights are available for download and can be used in place of ImageNet weights with just a couple lines of code.

machine learning↗

NASA NTRSDate not supplied

Using the Dimensionality Reduction (DR) Approach to Treat Singular and Near-Singular Source and Test Integrals on Triangles for Moment Methods

Recently, the authors presented preliminary results of an initial study of a dimensional reduction scheme for treating (near-)singular integrals (D. R. Wilton et al., “Dimensionality Reduction Approach for Treating Singular and Near-Singular Multidimensional Integrals of Electromagnetics,” 2022 URSI USNC National Radio Science Meeting, Boulder, CO, Jan. 2022). The approach reported there refined and extended several ideas appearing in a recent paper (R. R. Chang, Z. Wang, and Q. Xie, "Fast Convergent Quadrature Method for Evaluating the RWG- and SWG-Related Convolutional Integrals," IEEE Trans. Antennas Propagat., 69, Dec. 2021). That paper reported a curated collection of important, previously published results all leading to very efficient and accurate line integral methods for handling the most common (near-)singular integrals associated with triangles and tetrahedrons with RWG and SWG bases, respectively. Our contributions provided a simpler exposition as well as a more unified, systematic, and robust overall framework for deriving and applying the approach. This presentation further elucidates our extensions to the approach and broadens our initial study to examine the convergence behaviors of the various potential forms over a wider range of triangular source element shape and observation point parameters for various smoothing transformations; we also examine convergence, not just at the subtriangle level, but also overcomplete triangles. In addition, we investigate the application of the recently reported “vertex function” concept to develop faster converging test integrals (Rivero et al., “Acceleration of the Surface Test Integral Using Vertex Functions,” 2021 IEEE Int’l Symp. Ant. Propagat. and USNC-URSI Rad. Sci. Meeting,” Singapore, 4-10 Dec. 2021). Combining these separate schemes has the potential for yielding a near-optimal approach for accurately evaluating singular and near-singular integrals for moment methods.

Singular Integrals↗

NASA NTRSDate not supplied

BioSentinel: NASA’s First Deep Space Biological Mission

Since Apollo 17 in 1972, NASA has sent no humans or other biological organisms outside of Earth’s protective magnetosphere. NASA’s current Artemis program plans to put astronauts back on the Moon and eventually land human missions on Mars. One of the major challenges to long-duration crewed travel and habitation in deep space is an in-depth understanding of the biological effects of space radiation, often convoluted by the impact of reduced gravity. Such missions will require significant countermeasures, likely both technological and biomedical, to protect organisms from chronic radiation exposure. Small satellite missions like CubeSats can inform these countermeasures by investigating model organisms in relevant space environments. The BioSentinel mission is comprised of four segments developed at NASA Ames Research Center: a 6U CubeSat (1U = 10-cm cube), an ISS payload launched in December 2021 and two ground units, one for the mission’s CubeSat and one for the ISS payload. The last three segments have been operational since January 2022 and serve as experimental controls. BioSentinel’s 6U CubeSat is planned to launch as a secondary payload on the Artemis-1 rocket. It will be deployed on a lunar fly-by trajectory and into a heliocentric orbit. BioSentinel will be the first interplanetary satellite to study the biological response to space radiation outside Low Earth Orbit (LEO) in almost 50 years. BioSentinel is a complete, autonomous spacecraft capable of conducting experiments in deep space. Its 4U BioSensor payload is a fully automated and adaptable platform that can perform biological measurements with a range of microorganisms in multiple space environments, including the ISS, free flyers, and other platforms like the Lunar Gateway and lander vehicles. Once it reaches its orbit, BioSentinel’s CubeSat will measure the DNA damage response to ambient radiation in a model organism, the budding yeast Saccharomyces cerevisiae, which will be compared to information provided by an onboard radiation sensor and to data obtained in LEO (on ISS) and on Earth. Once in interplanetary space, fluidic cards containing desiccated yeast will be activated by growth medium addition at different time points throughout the mission. Growth and metabolic activity will be tracked continuously via optical measurements. This paper describes BioSentinel’s objectives, science, data management, and preliminary results from the ISS and ISS ground control segments.

BioSentinel↗

NASA NTRS2021

Machine Vision based Sample-Tube Localization for Mars Sample Return

A potential Mars Sample Return (MSR) architecture is being jointly studied by NASA and ESA. As currently envisioned, the MSR campaign consists of a series of 3 missions: sample cache, fetch and return to Earth. In this paper, we focus on the fetch part of the MSR, and more specifically the problem of autonomously detecting and localizing sample tubes deposited on the Martian surface. Towards this end, we study two machine-vision based approaches: First, a geometrydriven approach based on template matching that uses hardcoded filters and a 3D shape model of the tube; and second, a data-driven approach based on convolutional neural networks (CNNs) and learned features. Furthermore, we present a large benchmark dataset of sample-tube images, collected in representative outdoor environments and annotated with ground truth segmentation masks and locations. The dataset was acquired systematically across different terrain, illumination conditions and dust-coverage; and benchmarking was performed to study the feasibility of each approach, their relative strengths and weaknesses, and robustness in the presence of adverse environmental conditions.

Detry, R.↗

NASA NTRS2021

Machine Learning Based Path Planning for Improved Rover Navigation

Enhanced AutoNav (ENav), the baseline surface navigation software for NASA’s Perseverance rover, sorts a list of candidate paths for the rover to traverse, then uses the Approximate Clearance Evaluation (ACE) algorithm to evaluate whether the most highly ranked paths are safe. ACE is crucial for maintaining the safety of the rover, but is computationally expensive. If the most promising candidates in the list of paths are all found to be infeasible, ENav must continue to search the list and run time-consuming ACE evaluations until a feasible path is found. In this paper, we present two heuristics that, given a terrain heightmap around the rover, produce cost estimates that more effectively rank the candidate paths before ACE evaluation. The first heuristic uses Sobel operators and convolution to incorporate the cost of traversing high-gradient terrain. The second heuristic uses a machine learning (ML) model to predict areas that will be deemed untraversable by ACE. We used physics simulations to collect training data for the ML model and to run Monte Carlo trials to quantify navigation performance across a variety of terrains with various slopes and rock distributions. Compared to ENav's baseline performance, integrating the heuristics can lead to a significant reduction in ACE evaluations and average computation time per planning cycle, increase path efficiency, and maintain or improve the rate of successful traverses. This strategy of targeting specific bottlenecks with ML while maintaining the original ACE safety checks provides an example of how ML can be infused into planetary science missions and other safety-critical software.

Yue, Yisong↗

NASA NTRS2021

Evaluation of CloudSat Radiative Kernels Using ARM and CERES Observations and ERA5 Reanalysis

Despite the widespread use of the radiative kernel technique for studying radiative feedbacks and radiative forcings, there has not been any systematic, observation-based validation of the radiative kernel method. Here, we utilize observed and reanalyzed radiative fluxes and atmospheric profiles from the Atmospheric Radiation Measurement (ARM) program and ERA5 reanalysis to assess a set of observation-based radiative kernels from CloudSat for six ARM sites. The CloudSat radiative kernels, convoluted with the ERA5 state variables, can almost perfectly reconstruct the monthly anomalies of shortwave (SW) and longwave (LW) radiative fluxes in ERA5 at the surface (SFC) and top-of atmosphere (TOA) with correlations significantly being greater than 0.95. The biases of kernel-estimated flux anomalies calculated using the ARM-observed state variables can be more than twice as large when compared with the ARM-observed surface flux anomalies and Clouds and Earth’s Radiant Energy System (CERES) observed anomalies at the TOA. Generally, clouds contribute to most (>60%) of the variance of flux anomalies at Southern Great Plain (SGP), Tropical Western Pacific (TWP), and Eastern North Atlantic (ENA), and surface albedo dominates (>69%) the variance of SW flux anomalies at North Slope of Alaska (NSA). The radiative kernels exhibit the lowest correlation (r~[0.55,0.85]) when reconstructing SFC LW flux anomalies at SGP, TWP, and ENA, whose biases are related to the possibility that the kernels may not fully capture the characteristics 47 associated with MJO and ENSO at TWP and the presence of clouds at SGP and ENA.

Radiative kernels↗

NASA NTRS2022

Multisensor Machine Learning to Retrieve High Spatiotemporal Resolution Land Surface Temperature

Climate change is making heat waves more frequent, long-lasting, and severe. While multiple satellite types provide data to monitor surface temperature, geostationary (GEO) sensors provide near-continuous, continental-scale observations which can better capture the diurnal variability of land surface temperature (LST) than intermittent observations from low-earth orbit (LEO) sensors. However, standard products from GEO satellites are available at coarsened spatial and temporal resolutions compared to the native sensor resolution. Using datasets from the NASA Earth Exchange, we leveraged co-located, co-temporal observations from LEO and GEO satellites to learn a data-driven mapping using a convolutional neural network. The resulting NASA Earth eXchange Artificial Intelligence LST (NEXAI-LST) achieved a mean absolute error of 1.73 K relative to the target LEO product and improves on both spatial and temporal resolution [2 km, 10 minute] compared to the GEO full disk standard product [10 km, hourly]. In validation against measurements from a ground-based sensor network, NEXAI-LST achieves similar or better fit than both LEO and GEO standard products, while depending none of the prior knowledge of land surface and atmospheric states required by physical-statistical models. Further, application of the model to unseen LEO and GEO satellites demonstrates robust generalization of the model across spatial region, time of day, and sensor. In support of NASA’s open-source science initiative, we make our NEXAI-LST product, model, and codes available to facilitate data exploration and further studies.

Kate Marie Duffy↗

NASA NTRS2023

Predicting Two-Dimensional Airfoil Performance Using Graph Neural Networks

Computer simulations require the use of meshes to simulate geometries. These meshes capture important geometric features of the design and can be used in machine learning modeling. This report explores the use of graph neural networks (GNNs) to learn features from two-dimensional (2D) airfoil designs represented as a set of nodes connected using edges. This type of network is common in aerospace applications: most geometries are represented as a mesh in order to perform analysis. The objective of this work is to use GNNs to predict the performance of 2D airfoils generated using the program XFOIL. The predicted performance parameters include bulk quantities such as coefficients of lift (C L ), drag (C d , C dp ), moment (C m ), and node-specific quantities such as coefficient of pressure (C p ). In this report, a spline convolutional graph-based neural network is compared with deep learning neural networks to predict both bulk and node-specific quantities. The findings indicate the GNNs are able to predict bulk quantities quite well; however, when the number of outputs is increased, the deep neural network (DNN) proves to be better in its prediction capability. Two different normalization strategies were compared in the training of both GNNs and DNNs: minmax and standard deviation. In both types of networks, standard deviation scaling proved to be the best.

machine learning↗

NASA NTRS2021

Synthesizing Disparate LiDAR and Satellite Datasets through Deep Learning to Generate Wall-to-Wall Regional Inventories for the Complex, Mixed-Species Forests of the Eastern United States

Light detection and ranging (LiDAR) has become a commonly-used tool for generating remotely-sensed forest inventories. However, LiDAR-derived forest inventories have remained uncommon at a regional scale due to varying parameters among LiDAR data acquisitions and the availability of sufficient calibration data. Here, we present a model using a 3-D convolutional neural network (CNN), a form of deep learning capable of scanning a LiDAR point cloud, combined with coincident satellite data (spectral, phenology, and disturbance history). We compared this approach to traditional modeling used for making forest predictions from LiDAR data (height metrics and random forest) and found that the CNN had consistently lower uncertainty. We then applied the CNN to public data over six New England states in the USA, generating maps of 14 forest attributes at a 10 m resolution over 85% of the region. Aboveground biomass estimates produced a root mean square error of 36 Mg ha−1 (44%) and were within the 97.5% confidence of independent county-level estimates for 33 of 38 or 86.8% of the counties examined. CNN predictions for stem density and percentage of conifer attributes were moderately successful, while predictions for detailed species groupings were less successful. The approach shows promise for improving the prediction of forest attributes from regional LiDAR data and for combining disparate LiDAR datasets into a common framework for large-scale estimation.

Elias Ayrey↗

NASA NTRSDate not supplied

ArcjetCV: a new machine learning application for extracting time-resolved recession measurements from arc jet test videos

Arc jet Computer Vision (ArcjetCV) is a software application built to automate analysis of arc jet ground test video footage. This includes tracking material recession, sting arm motion, and the shock-material standoff distance. This provides a new capability to resolve and validate new physics associated with non-linear processes. This is an essential step to reduce testing, modeling, and validation uncertainties for heatshield material performance. ArcjetCV uses several types of machine learning (convolutional neural net: CNN, decision tree: DT, k-means unsupervised clustering: KM) to automate the video processing pipeline. These include inferring the start/stop of time segments of interest (1D CNN), measuring the time-dependent 2D recession of the material samples (2D CNN, DT), measuring the time-dependent shock standoff distance (2D CNN, DT), and post-processing cleaning of the recession data (KM). The software also provides a graphical user interface for ease of use. The results of using this tool on arc jet videos show non-linear time-dependent effects can be important for certain materials.

machine learning↗

NASA NTRS2022

Identification of Flux Rope Orientation via Neural Networks

Geomagnetic disturbance forecasting is based on the identification of solar wind structures and accurate determination of their magnetic field orientation. For nowcasting activities, this is currently a tedious and manual process. Focusing on the main driver of geomagnetic disturbances, the twisted internal magnetic field of interplanetary coronal mass ejections (ICMEs), we explore a convolutional neural network’s (CNN) ability to predict the embedded magnetic flux rope’s orientation once it has been identified from in situ solar wind observations. Our work uses CNNs trained with magnetic field vectors from analytical flux rope data. The simulated flux ropes span many possible spacecraft trajectories and flux rope orientations. We train CNNs first with full duration flux ropes and then again with partial duration flux ropes. The former provides us with a baseline of how well CNNs can predict flux rope orientation while the latter provides insights into real-time forecasting by exploring how accuracy is affected by percentage of flux rope observed. The process of casting the physics problem as a machine learning problem is discussed as well as the impacts of different factors on prediction accuracy such as flux rope fluctuations and different neural network topologies. Finally, results from evaluating the trained network against observed ICMEs from Wind during 1995–2015 are presented.

Thomas Narock↗

NASA NTRSDate not supplied

BioSentinel: NASA’s First Deep Space Biological Mission

BioSentinel↗

NASA NTRSDate not supplied

Enumeration and Fluorescence In Situ Hybridization of Microbial Bioburden on Cleanroom Surfaces

Introduction: Microorganisms are everywhere on Earth, even in the cleanest of places. Spacecraft assembly cleanrooms can harbor low levels of living and dead microbial cells (e.g., [1,2]), and cleanroom bioburden can also include organic molecules from industrial sources and in situ biomass. Life detection missions require careful attention to avoid contaminants that can be easily convoluted with analytical targets. We are evaluating epifluorescent microscopy and fluorescence in situ hybridization (FISH) as methods to complement organic contamination detection techniques. Epifluorescent cell counting offers an accurate and cost-effective way to quantify low levels of surface biomass. FISH could allow for the identification of residual organisms, and can be targeted to detect active populations of specific organisms such as bacteria known to resist cleaning procedures. This effort is part of a larger study that is concentrated on characterizing the surface and airborne molecular organic contamination background in Johnson Space Center (JSC) Astromaterials curation laboratories and Goddard Space Flight Center (GSFC) spacecraft assembly rooms, and understanding contaminants in the context of cleaning procedures and residual bioburden. Methods: Samples were collected by swabbing surfaces in ISO 5 and ISO 7 equivalent cleanrooms at JSC. Swabs for FISH were fixed in 4% paraformaldehyde (PFA) for 3 hours and then stored in 1:1 ethanol:PBS, while swabs for cell counting were stored in 4% PFA until analysis to avoid any cell loss during centrifugation that could impact quantification of very low biomass samples. Cell counting was performed with SYBR Gold as in [3], but adapted for very low biomass. FISH was performed as in [4], using DAPI as a counterstain for all DNA-containing cells. Negative controls included wells with no probe applied, to test for natural fluorescence, as well as the nonsense probe NONEUB (reverse complement of EUB338) to evaluate non-specific probe binding. Results and Discussion: Cleanroom surfaces had 102-103 cells cm-2. The extremely low biomass of these samples was challenging for enumeration, and required careful and routine use of “field” and laboratory blanks. FISH was performed with the general archaeal and bacterial probes ARCH915 and EUB338 (EUBMIX, [4]), probe GAMBET ([4]), and PSE227, which targets the genus Pseudomonas [5]). The latter two probes were selected because Pseudomonas spp. and other Gammaproteobacteria have not been isolated from cleanroom surfaces but do appear frequently in rRNA gene libraries from these surfaces. While some active bacteria were identified (Fig. 1c), most cells detectable by DAPI did not have a strong or any fluorescent signal (e.g., Fig. 1d), indicating that the vast majority of cells are dead or inactive. This suggests that cleaning protocols are effective at inactivating microbial contaminants, but that dead or inactive cells can remain on surfaces. Cells were often clumped in a weakly autofluorescent matrix, possibly biofilm material (Fig. 1c,d). We also observed other particulate material that was collected by the swabs, including apparent textile fibers (Fig. 1b). Our results are consistent with other studies that show that the bioburden present in clean rooms includes active, dormant, and dead cells. We will discuss how FISH and epifluorescent cell counting could be applied in planetary protection protocols, including the advantages and disadvantages of FISH and cell counting for routine use, as well as different possible applications for more specialized FISH procedures. References: [1] Moissl-Eichinger et al. (2015) Sci Rep, 5, 9156 [2] Hendrickson et al. (2021) Microbiome, 9, 238 [3] Jones et al. (2017) Appl Environ Microbiol, 83, e00909-17 [4] Jones et al. (2015) Appl Environ Microbiol, 81, 1242-1250. [5] Watt et al. (2006) Environ Microbiol, 8, 871-884

C J Huff↗