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At least 973 records · Page 54

First Plant Cell Atlas symposium report

The Plant Cell Atlas (PCA) community hosted a virtual symposium on December 9 and 10, 2021 on single cell and spatial omics technologies. The conference gathered almost 500 academic, industry, and government leaders to identify the needs and directions of the PCA community and to explore how establishing a data synthesis center would address these needs and accelerate progress. This report details the presentations and discussions focused on the possibility of a data synthesis center for a PCA and the expected impacts of such a center on advancing science and technology globally. Community discussions focused on topics such as data analysis tools and annotation standards; computational expertise and cyber-infrastructure; modes of community organization and engagement; methods for ensuring a broad reach in the PCA community; recruitment, training, and nurturing of new talent; and the overall impact of the PCA initiative. These targeted discussions facilitated dialogue among the participants to gauge whether PCA might be a vehicle for formulating a data synthesis center. The conversations also explored how online tools can be leveraged to help broaden the reach of the PCA (i.e., online contests, virtual networking, and social media stakeholder engagement) and decrease costs of conducting research (e.g., virtual REU opportunities). Major recommendations for the future of the PCA included establishing standards, creating dashboards for easy and intuitive access to data, and engaging with a broad community of stakeholders. The discussions also identified the following as being essential to the PCA's success: identifying homologous cell-type markers and their biocuration, publishing datasets and computational pipelines, utilizing online tools for communication (such as Slack), and user-friendly data visualization and data sharing. In conclusion, the development of a data synthesis center will help the PCA community achieve these goals by providing a centralized repository for existing and new data, a platform for sharing tools, and new analytical approaches through collaborative, multidisciplinary efforts. A data synthesis center will help the PCA reach milestones, such as community-supported data evaluation metrics, accelerating plant research necessary for human and environmental health.

59 BASIC BIOLOGICAL SCIENCES↗

Simulation of the ATLAS New Small Wheel (NSW) System. In: Proceedings of International Conference on Technology and Instrumentation in Particle Physics 2017

New Small Wheel (NSW) is a major detector upgrade project of the ATLAS muon spectrometer for the LHC luminosity upgrade. NSW comprises sTGC and Micromegas as muon tracking detectors of high rate capability, and front- and back-end electronics for upgrading the muon level-1 trigger. Detailed simulation of the detectors and the electronics has been developed and used for the study of expected performance. An overview of the NSW system and some results of the trigger performance with the Micromegas are presented.

ATLAS↗

Tracking and Vertexing with the ATLAS Inner Detector in the LHC Run-2. In: Proceedings of International Conference on Technology and Instrumentation in Particle Physics 2017

Run-2 of the Large Hadron Collider (LHC) has provided new challenges to track and vertex reconstruction with higher centre-of-mass energies and luminosity leading to increasingly high-multiplicity environments, and boosted, highly-collimated physics objects. We present an overview of the ATLAS Inner Detector tracker in Run-2 including the track reconstruction algorithm, time-dependent alignment, tracking and vertexing performance.

ATLAS Inner Detector↗

CMOS Pixel Development for the ATLAS Experiment at HL-LHC. In: Proceedings of International Conference on Technology and Instrumentation in Particle Physics 2017

The high luminosity upgrade of the LHC necessitates a complete exchange of the current ATLAS Inner Tracker for a purely silicon one. Large areas therefore have to be covered by radiation tolerant, low cost and low material budget silicon detectors. New approaches are being explored using CMOS pixel sensors, providing charge collection in a depleted layer. They are based on technologies that allow to use high depletion voltages and high resistivity wafers for large depletion depths with multiple nested wells, enabling for CMOS electronics to be embedded safely into the sensor substrate. We are investigating depleted CMOS pixel detectors with monolithic or hybrid designs in view of their suitability for high trigger rates, fast timing and the high radiation environment at HL-LHC. This paper will discuss recent results of the main candidate technologies and the current developments towards a monolithic solution.

ATLAS ITk↗

Measurement of $t\overline{t}$ production in association with additional b -jets in the eμ final state in proton–proton collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

This paper presents measurements of top-antitop quark pair ($t\overline{t}$) production in association with additional b-jets. The analysis utilises 140 fb -1 of proton–proton collision data collected with the ATLAS detector at the Large Hadron Collider at a centre-of-mass energy of 13 TeV. Fiducial cross-sections are extracted in a final state featuring one electron and one muon, with at least three or four b-jets. Results are presented at the particle level for both integrated cross-sections and normalised differential cross-sections, as functions of global event properties, jet kinematics, and b-jet pair properties. Observable quantities characterising b-jets originating from the top quark decay and additional b-jets are also measured at the particle level, after correcting for detector effects. The measured integrated fiducial cross sections are consistent with $t\overline{t}$$b\overline{b}$ predictions from various next-to-leading-order matrix element calculations matched to a parton shower within the uncertainties of the predictions. State of-the-art theoretical predictions are compared with the differential measurements; none of them simultaneously describes all observables. Differences between any two predictions are smaller than the measurement uncertainties for most observables.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Differential cross-sections for events with missing transverse momentum and jets measured with the ATLAS detector in 13 TeV proton-proton collisions

Measurements of inclusive, differential cross-sections for the production of events with missing transverse momentum in association with jets in proton-proton collisions at √s = 13 TeV are presented. The measurements are made with the ATLAS detector using an integrated luminosity of 140 fb –1 and include measurements of dijet distributions in a region in which vector-boson fusion processes are enhanced. They are unfolded to correct for detector resolution and efficiency within the fiducial acceptance, and are designed to allow robust comparisons with a wide range of theoretical predictions. A measurement of differential cross sections for the Z → νν process is made. The measurements are generally well-described by Standard Model predictions except for the dijet invariant mass distribution. Auxiliary measurements of the hadronic system recoiling against isolated leptons, and photons, are also made in the same phase space. Ratios between the measured distributions are then derived, to take advantage of cancellations in modelling effects and some of the major systematic uncertainties. These measurements are sensitive to new phenomena, and provide a mechanism to easily set constraints on phenomenological models. To illustrate the robustness of the approach, these ratios are compared with two common Dark Matter models, where the constraints derived from the measurement are comparable to those set by dedicated detector-level searches.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurements of W + W − production cross-sections in pp collisions at $\sqrt{s}=13$ TeV with the ATLAS detector

Measurements of W + W − → e ± νμ ∓ ν production cross-sections are presented, providing a test of the predictions of perturbative quantum chromodynamics and the electroweak theory. The measurements are based on data from pp collisions at $\sqrt{s}$ = 13 TeV recorded by the ATLAS detector at the Large Hadron Collider in 2015–2018, corresponding to an integrated luminosity of 140 fb −1 . The number of events due to top-quark pair production, the largest background, is reduced by rejecting events containing jets with b-hadron decays. An improved methodology for estimating the remaining top-quark background enables a precise measurement of W + W − cross-sections with no additional requirements on jets. The fiducial W + W − cross-section is determined in a maximum-likelihood fit with an uncertainty of 3.1%. The measurement is extrapolated to the full phase space, resulting in a total W + W − cross-section of 127 ± 4 pb. Differential cross-sections are measured as a function of twelve observables that comprehensively describe the kinematics of W + W − events. The measurements are compared with state-of-the-art theory calculations and excellent agreement with predictions is observed. A charge asymmetry in the lepton rapidity is observed as a function of the dilepton invariant mass, in agreement with the Standard Model expectation. A CP-odd observable is measured to be consistent with no CP violation. Limits on Standard Model effective field theory Wilson coefficients in the Warsaw basis are obtained from the differential cross-sections.

Accelerator Physics↗

A search for dark matter produced in association with a dark Higgs boson decaying into a Higgs boson pair in 3b or 4b final states using pp collisions at $\sqrt{s}=13$ TeV with the ATLAS detector

A search is performed for dark matter particles produced in association with a resonant pair of Higgs bosons using 140 fb −1 of proton-proton collisions at a centre-of-mass energy of 13 TeV recorded by the ATLAS detector at the Large Hadron Collider. This signature is expected in some extensions of the Standard Model predicting the production of dark matter particles, and is interpreted in terms of a dark Higgs model containing a Z′ mediator in which the dark Higgs boson s decays into a pair of Higgs bosons. The dark Higgs boson is reconstructed through final states with at least three b-tagged jets, produced by the pair of Higgs boson decays, in events with significant missing transverse momentum consistent with the presence of dark matter. The observed data are found to be in good agreement with Standard Model predictions, constraining scenarios with dark Higgs boson masses within the range of 250 to 400 GeV and Z′ mediators up to 2.3 TeV.

Dark Energy and Dark Matter↗

Search for a light CP-odd Higgs boson decaying into a pair of τ -leptons in proton-proton collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

This paper reports a search for a light CP-odd scalar resonance with a mass of 20 GeV to 90 GeV in 13 TeV proton-proton collision data with an integrated luminosity of 140 fb -1 collected with the ATLAS detector at the Large Hadron Collider. The analysis assumes the resonance is produced via gluon-gluon fusion and decays into a $τ^+ τ^-$ pair which subsequently decays into a fully leptonic $µ^+ ν_µ \overline{ν}_τ e^- \overline{ν}_ e ν_τ$ or $e^+ ν_e \overline{ν}_τ µ^- \overline{ν}_µ ν_τ$ final state. No significant excess of events above the predicted Standard Model background is observed. The results are interpreted within a favour-aligned two-Higgs-doublet model, and a model independent cross-section interpretation is also given. Upper limits at 95% confidence level between 3.0 pb and 68 pb are set on the cross-section for producing a CP-odd Higgs boson that decays into a $τ^+ τ^-$ pair.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A new ATLAS muon CSC readout system with system on chip technology on ATCA platform

The ATLAS muon Cathode Strip Chamber (CSC) back-end readout system has been upgraded during the LHC 2013-2015 shutdown to be able to handle the higher Level-1 trigger rate of 100 kHz and the higher occupancy at Run 2 luminosity. The readout design is based on the Reconfiguration Cluster Element (RCE) concept for high bandwidth generic DAQ implemented on the ATCA platform. The RCE design is based on the new System on Chip Xilinx Zynq series with a processor-centric architecture with ARM processor embedded in FPGA fabric and high speed I/O resources together with auxiliary memories to form a versatile DAQ building block that can host applications tapping into both software and firmware resources. The Cluster on Board (COB) ATCA carrier hosts RCE mezzanines and an embedded Fulcrum network switch to form an online DAQ processing cluster. More compact firmware solutions on the Zynq for G-link, S-link and TTC allowed the full system of 320 G-links from the 32 chambers to be processed by 6 COBs in one ATCA shelf through software waveform feature extraction to output 32 S-links. Furthermore, the full system was installed in Sept. 2014. We will present the RCE/COB design concept, the firmware and software processing architecture, and the experience from the intense commissioning towards LHC Run 2.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A programmable time alignment scheme for detector signals from the upgraded muon spectrometer at the ATLAS experiment

We present a programmable time alignment scheme used in an ASIC for the ATLAS forward muon trigger development. The scheme utilizes regenerated clocks with programmable phases to compensate for the timing offsets introduced by different detector trace lengths. Each ASIC used in the design has 104 input channels with delay compensation circuitry providing steps of ~ 3 ns and a full range of 25 ns for each channel. Detailed implementation of the scheme including majority logic to suppress single-event effects is presented. The scheme is flexible and fully synthesizable. Here, the approach is adaptable to other applications with similar phase shifting requirements. In addition, the design is resource efficient and is suitable for cost-effective digital implementation with a large number of channels.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Design of the first full size ATLAS ITk strip sensor for the endcap region

The ATLAS collaboration is designing the all-silicon Inner Tracker (ITk) that will operate in the HL-LHC replacing the current design. The silicon microstrip sensors for the barrel and the endcap regions in the ITk are fabricated in 6 inch, p-type, float-zone wafers, where large-area strip sensor designs are laid out together with a number of miniature sensors. The radiation tolerance and specific system issues like the need for slim edge of 450 μm have been tested with square shaped sensors intended for the barrel part of the tracker. This work presents the design of the first full size silicon microstrip sensor for the endcap region with a slim edge of 450 μm. The strip endcaps will consist of several wheels with two layers of silicon strip sensors each. The strips have to lie along the azimuthal direction, apart from a small stereo angle rotation (20 mrad on each side, giving 40 mrad total) for measuring the second coordinate of tracks. This stereo angle is built into the strip layout of the sensor and, in order to avoid orphan strips, the sensor edges are inclined by the stereo angle. On top of this, the top and bottom edges are designed as arcs to have equal length strips. Together with the design of this new Stereo Annulus sensor, we will report on the initial measurements of the leakage current as a function of bias voltage, after dicing, and the depletion voltage.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Mass production of a trigger data serializer ASIC for the upgrade of the muon spectrometer at the ATLAS experiment

The Trigger Data Serializer (TDS) is a custom ASIC designed for the upgrade of the innermost station of the endcap ATLAS Muon spectrometer. Here, it is a mixed-signal chip with two working modes that can handle up to 128 detector channels. A total of 6000 TDS ASICs have been produced for detector operation. This paper discusses a custom automatic test platform we developed to provide quality control of the TDS ASICs. We introduce the design, illustrate the test procedures, and discuss the experimental results.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Design and performance of a TDC ASIC for the upgrade of the ATLAS Monitored Drift Tube detector

We present the prototype of a time-to-digital (TDC) ASIC for the upgrade of the ATLAS Monitored Drift Tube (MDT) detector for high-luminosity LHC operation. This ASIC is based on a previously submitted demonstrator ASIC designed for timing performance evaluation, and includes all features necessary for the various operation modes, as well as the migration to the TSMC 130 nm CMOS technology. Here, we present the TDC design with the emphasis on added features and performance optimization. Tests of the timing performance demonstrate that this ASIC meets the design specifications. The TDC has a bin size of about 780 ps, and a timing bin variations within ±40 ps for all 24 channels with leading and trailing edge digitization, while the power consumption has been limited to 250 mW, corresponding to a consumption of about 5.2 mW per edge measurement.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Charge collection study with the ATLAS ITk prototype silicon strip sensors ATLAS17LS

The inner tracker of the ATLAS detector is scheduled to be replaced by a completely new silicon-based inner tracker (ITk) for the Phase-II of the CERN LHC (HL-LHC). The silicon strip detector covers the volume 40 < R < 100 cm in the radial and | z | < 300 cm in the longitudinal directions. The silicon sensors for the detector will be fabricated using the n + -on-p 6-inch wafer technology, for a total of 22,000 wafers. Here, intensive studies were carried out on the final prototype sensors ATLAS17LS fabricated by Hamamatsu Photonics (HPK). The charge collection properties were examined using penetrating 90 Sr β -rays and the ALIBAVA fast readout system for the miniature sensors of 1 cm × 1 cm in area. The samples were irradiated by protons in the 27 MeV Birmingham Cyclotron, the 70 MeV CYRIC at Tohoku University, and the 24 GeV CERN-PS, and by neutrons at Ljubljana TRIGA reactor for fluence values up to 2 × 10 15 n eq /cm 2 . The change in the charge collection with fluence was found to be similar to the previous prototype ATLAS12, and acceptable for the ITk. Sensors with two active thicknesses, 300 μ m (standard) and 240 μ m (thin), were compared and the difference in the charge collection was observed to be small for bias voltages up to 500 V. Some samples were also irradiated with gamma radiation up to 2 MGy, and the full depletion voltage was found to decrease with the dose. This was caused by the Compton electrons due to the 60 Co gamma radiation. To summarize, the design of the ATLAS17LS and technology for its fabrication have been verified for implementation in the ITk. We are in the stage of sensor pre-production with the first sensors already delivered in January of 2020.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Initial tests of large format sensors for the ATLAS ITk strip tracker

For the construction of the Inner Tracker (ITk) as part of the phase-II upgrade programme of the ATLAS detector for the High-Luminosity (HL) LHC, batches of Long Strip (LS) and Short Strip (SS) n + -in-p type micro-strip sensors have been produced by Hamamatsu Photonics and Infineon. The full size sensors measure approximately 98 × 98 mm 2 and are designed and engineered for tolerance against the 9.7 × 10 14 1 MeV n eq /cm 2 fluence expected at the HL-LHC, including a safety factor of 1.5. Each sensor has 2 or 4 columns of 1280 individual channels arranged at 75.5 μ m horizontal pitch. To ensure the sensors comply with their specifications, a Quality Control (QC) procedure has been implemented, comprising measurements on every individual sensor as well as on a sample basis. Every sensor is subjected to an initial visual inspection, after which the full surface of the sensor is captured with very high resolution by an automated camera setup. Non-contact metrology is performed to obtain the sensor surface profile. Electrical measurements establishing the reverse bias leakage current and depletion voltage are then conducted automatically. Sample sensors from every batch are subjected to 40 h of leakage stability checks in controlled atmosphere, and tests on every channel measuring leakage current, coupling capacitance and bias resistance are done. The recorded results are uploaded to a production database following data quality checks. In this paper, QC test validation data and the compiled results for the first batches of production grade sensors are presented. The QC protocol was validated, and the first production sensors were confirmed to be within specification. The results are compared to those from the previous generation of prototype sensors.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Design of a Time-to-Digital Converter ASIC and a mini-DAQ system for the Phase-2 upgrade of the ATLAS Monitored Drift Tube detector

We present the second prototype of a time-to-digital (TDC) ASIC for the upgrade of the ATLAS Monitored Drift Tube (MDT) detector for High-Luminosity LHC operations. Compared to the first prototype, triple modular redundancy has been implemented for the configuration and flow control logic. Here, the total power consumption is increased by less than 10 mW while achieving the same time resolution and channel uniformity. A mini-DAQ system has been built to verify the front-end electronics chain with the new prototype together with other ASICs and boards in triggered mode. Cosmic ray tests with a small-diameter MDT chamber indicate that the configuration and data transmission of the readout electronics perform well. It is expected that this prototype design will be used in the final production.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A signal packet router for the upgrade of the Muon spectrometer at the ATLAS experiment

Here, we present the design, characterization, and production of a signal packet router for the upgrade of the ATLAS forward muon detector. The router serves as a packet switch in one of the primary trigger paths. It handles up to 12 serial inputs at 4.8 Gbps/input from on-detector electronics and outputs four 4.8 Gbps to the trigger processing circuits. In the 12-to-4 packet switching process, the input streams are decoded and synchronized to a common clock domain for data packets forwarding and NULL packets suppression. Challenges in the design include operations of multi-giga hertz serial links with low and constant latency (<100 ns) for packet routing, as well as mitigation of radiation-induced effects in the harsh radiation environment over 10 years of detector operation. The Router design has been fully characterized and demonstrated to meet all specifications. In total 256 Routers were installed in the detector. Its design concept can be used in other similar applications, particularly in a radiation environment.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗