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At least 955 records · Page 53

Fine-scale landscape characteristics, vegetation composition, and snowmelt timing control phenological heterogeneity across low-Arctic tundra landscapes in Western Alaska

The Arctic is warming at over twice the rate of the rest of the Earth, resulting in significant changes in vegetation seasonality that regulates annual carbon, water, and energy fluxes. However, a crucial knowledge gap exists regarding the intricate interplay among climate, permafrost, and vegetation that generates high phenology variability across extensive tundra landscapes. This oversight has led to significant discrepancies in phenological patterns observed across warming experiments, long-term ecological observations, and satellite and modeling studies, undermining our ability to understand and forecast plant responses to climate change in the Arctic. To address this problem, we assessed plant phenology across three low-Arctic tundra landscapes on the Seward Peninsula, Alaska, using a combination of in-situ phenocam observations and high-resolution PlanetScope CubeSat data. We examined the patterns and drivers of phenological diversity across the landscape by (1) quantifying phenological diversity among dominant plant function types (PFTs) and (2) modeling the interrelations between plant phenology and fine-scale landscape features, such as topography, snowmelt, and vegetation. Our findings reveal that both spring and fall phenology varied significantly across Arctic PFTs, accounting for about 25%–44% and 34%–59% of the landscape-scale variation in the start of spring [SOS] and start of fall [SOF], respectively. Deciduous tall shrubs (e.g. alder and willow) had a later SOS (~7 d behind the mean of other PFTs), but completed leaf expansion (within 2 weeks) considerably faster compared to other PFTs. We modeled the landscape-scale variation in SOS and SOF using Random Forest, which showed that plant phenology can be accurately captured by a suite of variables related to vegetation composition, topographic characteristics, and snowmelt timing (variance explained: 53%–68% for SOS and 59%–82% for SOF). Notably, snowmelt timing was a crucial determinant of SOS, a factor often neglected in most spring phenology models. Our study highlights the impact of fine-scale vegetation composition, snow seasonality, and landscape features on tundra phenological heterogeneity. Improved understanding of such considerable intra-site phenological variability and associated proximate controls across extensive Arctic landscapes offers critical insights for representation of tundra phenology in process models and associated impact assessments with climate change.

54 ENVIRONMENTAL SCIENCES↗

Seasonal changes in occupancy and activity patterns in native Collared Peccary and non-native wild pig and Common Warthog in southern Texas, the United States

Abstract Southern Texas, USA, is home to native collared peccaries (Dicotyles tajacu) and introduced populations of invasive wild pigs (generally Sus scrofa × domesticus hybrids) and non-native African warthogs (Phacochoerus africanus). Although these ecologically similar mammals co-occur in this region, the potential impacts of invasive suids on collared peccaries are poorly understood. We examined co-occupancy and activity pattern overlap of collared peccaries, wild pigs, and warthogs across 3 seasons (fall, winter, and spring) using remote camera data collected from Chaparral Wildlife Management Area, Cotulla, Texas (November 2020 to June 2021). Using activity pattern analyses and single and 2-species occupancy models incorporating habitat and climate characteristics, we found evidence of extensive spatial overlap between all species pairs and varying degrees of temporal overlap depending on species pairs and season. Collared peccaries and wild pigs displayed moderate temporal overlap across all seasons. Collared peccaries appeared to alter fall activity in the presence of wild pigs to be active earlier in the morning and less active during the day. Collared peccaries and warthogs had low-to-moderate temporal overlap (low in fall, winter; moderate in spring). Wild pigs and warthogs had low temporal overlap (fall, spring) and wild pigs appeared to alter activity in the presence of warthogs (fall), becoming less active during the day during peak warthog activity. Overall, our results suggest that peccary, wild pig, and warthog interactions and activity are dynamic and vary seasonally according to the ecology and preferred environmental conditions of each species. Given the potential for interspecific competition and disease transmission with Collared Peccary and other native wildlife, resource partitioning between wild pigs and warthogs needs to be further examined to aid in effective management strategies.

Kupferman, Caitlin A. (ORCID:0009000953554860)↗

Latitudinal shifts of soil microbial biomass seasonality

Soil microbes ultimately drive the mineralization of soil organic carbon and thus ecosystem functions. We compiled a dataset of the seasonality of microbial biomass carbon (MBC) and developed a semi-mechanistic model to map monthly MBC across the globe. MBC exhibits an equatorially symmetric seasonality between the Northern and Southern Hemispheres. In the Northern Hemisphere, MBC peaks in autumn and is minimal in spring at low latitudes (<25°N), peaks in the spring and is minimal in autumn at mid-latitudes (25°N to 50°N), while peaks in autumn and is minimal in spring at high latitudes (>50°N). This latitudinal shift of MBC seasonality is attributed to an interaction of soil temperature, soil moisture, and substrate availability. The MBC seasonality is inconsistent with patterns of heterotrophic respiration, indicating that MBC as a proxy for microbial activity is inappropriate at this resolution. This study highlights the need to explicitly represent microbial physiology in microbial models. The interactive controls of environments and substrate on microbial seasonality provide insights for better representing microbial mechanisms in simulating ecosystem functions at the seasonal scale.

54 ENVIRONMENTAL SCIENCES↗

Condensation of collective polar vortex modes

The dynamics of extended objects such as domain walls, domain bubbles, vortex structures, etc., can be described by their equations of motion associated with their effective mass and spring constant. Here we analytically derive the equations of motion for the polarization dynamics and elastodynamics for the structural responses of ferroelectric polar vortices, and theoretically extract their effective mass, spring constant, and mode frequencies. We demonstrate two subterahertz phonon modes and predicted their frequencies, both consistent with our recent experimental measurements and phase-field simulations. We show that elastic modulation of the energy function and spring constants leads to a condensation of a collective mode upon a second-order structural transition from symmetric to asymmetric vortices at a critical strain, analogous to the ferroelectric soft phonon mode at a ferroelectric transition. Furthermore, the present work offers a theoretical framework for predicting and manipulating the ultrafast collective dynamics of polar nanostructures.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Interseasonal Connections between the Timing of the Stratospheric Final Warming and Arctic Sea Ice

Connections across seasons in atmospheric circulation and sea ice have long been sought to advance seasonal prediction. This study presents a link between the springtime stratosphere and Arctic sea ice in summer through autumn. The polar stratospheric vortex dominates the winter stratosphere before breaking down each spring, which is called the stratospheric final warming, as solar radiation returns to the pole. Interannual variability of this breakdown is dynamically driven, leading to different springtime tropospheric and surface circulation patterns. To examine the different impacts of delayed and early final warmings, a multimodel composite was generated from selected CMIP5 models. Additionally, regressions were performed on JRA-55 against an index of springtime polar vortex strength. In both the multimodel composites and reanalysis regressions, significant anomalies in sea ice thickness persist several months following an anomalous timing of the final warming. A later final warming or stronger springtime polar stratospheric vortex leads to negative sea ice thickness anomalies in the East Siberian Sea and positive anomalies in the Beaufort Sea in comparison with an earlier final warming or weaker polar vortex. The spring polar stratospheric vortex is related to spring polar surface circulation patterns. The winds associated with this pattern induce anomalous sea ice motion, moving ice from the East Siberian Sea toward the Beaufort Sea. Reduced sea ice in the East Siberian Sea is linked to anomalous warmth over this region in autumn. Our results suggest that the timing of the stratospheric final warming exerts an influence on the tropospheric circulation and sea ice through autumn, which has implications for seasonal climate prediction.

Kelleher, Michael↗

Tracking moisture sources of precipitation over Central Asia: A study based on the water-source-tagging method

Central Asia is a semi-arid to arid region that is sensitive to hydrological changes. We use the Community Atmosphere Model version 5 (CAM5), equipped with a water tagging capability, to investigate the major moisture sources for climatological precipitation and its long-term trends over Central Asia. Europe, the north Atlantic and local evaporation, which explain 33.2±1.5%, 23.0±2.5% and 19.4±2.2% of the precipitation, respectively, are identified as the most dominant moisture sources for northern Central Asia (NCA). For precipitation over southern Central Asia (SCA), Europe, the north Atlantic and local evaporation contributes 25.4±2.7%, 18.0±1.7% and 14.7±1.9%, respectively. In addition, the contributions of South Asia (8.6±1.7%) and Indian Ocean (9.5±2.0%) are also substantial for SCA. Modulated by the seasonal meridional shift of subtropical westerly jet, moisture originating from low- and mid-latitude is important in winter, spring and autumn, while northern Europe contributes more in summer. We also explain the observed drying trends over southeastern Central Asia in spring and over NCA in summer during 1956-2005. The drying trend over the southeastern Central Asia in spring is mainly due to the decrease of local evaporation and weakened moisture fluxes from the Arabian Peninsula and Arabian Sea associated with the warming Western Pacific. The drying trend over NCA in summer can be attributed to the decrease of local evaporation and reduced moisture from northern Europe due to the southward shift of the subtropical westerly jet.

Jiang, Jie↗

The Globally Coherent Pattern of Autumn Monsoon Precipitation

Over most tropical land areas, the annual peak in precipitation occurs during summer, associated with the local monsoon circulation. However, in some coastal regions in the tropics the bulk of annual precipitation occurs in autumn, after the low-level summer monsoon westerlies have abated. Examples include the Nordeste region of Brazil, southeastern India and Sri Lanka, and coastal Tanzania. Unlike equatorial regions, they receive little rainfall during local spring. Such regions are present along the eastern coasts of nearly all continents, suggesting that they comprise a coherent yet previously unrecognized global phenomenon. In this study, we identify eight tropical locations that experience an “autumn monsoon” and show that this unusual seasonal cycle is generated by similar mechanisms in all of these. When these regions receive their peak rainfall, they lie poleward of the ITCZ in easterly low-level winds. The spatial structure of precipitation in these regions can be explained by their placement to the east of mountain ranges that organize moist convection on their windward sides. However, orographic forcing alone cannot explain their unique seasonal cycle: despite similarities in wind direction, surface humidity, and sea surface temperatures (SSTs) between autumn and spring, these regions receive significantly more rainfall in autumn than in spring. Here, we show that this is due to differences in the large-scale atmospheric stability between the equinoctial seasons, which can be captured by a relative SST metric and is influenced by SSTs in the remote eastern upwelling zones of the Pacific and Atlantic Oceans.

54 ENVIRONMENTAL SCIENCES↗

Anthropogenic Influences on Tornadic Storms

The impact of climate change on severe storms and tornadoes remains uncertain, largely owing to inconsistencies in observational data and limitations of climate models. Here, we performed ensembles of convection-permitting climate model simulations to examine how three tornadic storms would change if similar events were to occur in pre-industrial and future climates. The choice of events includes winter, nocturnal, and spring tornadic storms to provide insight into how the timing and seasonality of storms may affect their response to climate change. Updraft helicity (UH), convective available potential energy (CAPE), storm relative helicity (SRH), and convective inhibition (CIN) were used to determine the favorability for the three tornadic storm events in the different climate states. We found that from the pre-industrial to present, the potential for tornadic storms decreased in the winter event and increased in the nocturnal and spring events. With future climate change, the potential for tornadic storms increased in the winter and nocturnal events in association with increased CAPE, and decreased in the spring event despite greater CAPE.

54 ENVIRONMENTAL SCIENCES↗

Changes in the SST Seasonal Cycle in a Warmer North Pacific without Ocean Dynamical Feedbacks

Climate models project a significant intensification of the sea surface temperature (SST) seasonal cycle over the subpolar North Pacific due to global warming, with the shallower mixed layer widely recognized as the dominant factor. However, employing slab ocean experiments with only ocean–atmosphere thermal coupling, we find a substantial contribution from changes in surface heat flux to this seasonal cycle intensification. In particular, the stronger Newtonian cooling effect in winter acts as a more potent damping than in summer. This differential damping inhibits the warming in colder seasons, significantly contributing to the intensified SST seasonal cycle in the subpolar North Pacific. In addition, consistent phase shifts in the North Pacific are identified across CMIP6 models. In the northwest North Pacific, a phase advance is associated with anomalous heating in early spring, driven by enhanced warm atmospheric advection from lower latitudes and sea ice melting in marginal seas. In contrast, the southeast North Pacific exhibits a phase delay attributed to the anomalous cooling in spring relative to autumn. This cooling is due to weakened trade winds and increased presence of high clouds. In conclusion, the former leads to stronger evaporative cooling in spring, while the latter impedes shortwave radiation from reaching the ocean.

54 ENVIRONMENTAL SCIENCES↗

Impacts of the Large Seasonal Cycle of Upwelling Zone Sea Surface Temperatures on the Atmosphere

Abstract The amplitude of the annual cycle of sea surface temperatures (SSTs) within the tropics is the largest in the eastern Atlantic and Pacific Oceans. Upwelling activity in these regions is maximum during late boreal summer and autumn, resulting in cool SSTs, and minimum in spring, leading to warm SSTs. The fundamental question of how this large seasonal cycle affects the atmosphere has received relatively little scientific attention. In this study, we use perturbed-SST experiments in an atmosphere model to identify the effects of the seasonal cycle of upwelling zone SSTs on the atmospheric state. Although annual-mean upwelling zone SSTs are cool, preventing their convective coupling with the free troposphere for much of the year, their boreal spring warmth can activate precipitating convection. We find that in this season, upwelling zone SSTs affect the atmosphere by 1) altering the intensity and position of the local intertropical convergence zone and 2) inducing a thermally forced Matsuno–Gill response, altering subtropical winds. On the seasonal time scale, the Atlantic upwelling zone is more effective than the Pacific in inducing this response. We also find that, consistent with prior work, the Pacific upwelling zone excites extratropical modes of internal atmospheric variability. Upwelling zone SSTs have remained poorly simulated through generations of climate models; our experiments allow us to diagnose the atmospheric biases that arise in response to upwelling zone SST biases. Our experiments show that upwelling zone SST biases are most impactful in boreal spring, particularly over the Atlantic.

Ramesh, Nandini↗

AmeriFlux FLUXNET-1F US-RC4 Moscow Mountain on-farm site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-RC4 Moscow Mountain on-farm site. This is the FLUXNET version of the carbon flux data for the site US-RC4 Moscow Mountain on-farm site produced by applying the standard ONEFlux (1F) software. Site Description - The Moscow Mountain On-farm site operated 2012-2016 as part of a cluster of 5 towers (RC1 to RC5) operated for the Regional Approaches to Climate Change (REACCH) USDA-supported research project. The site is located in the high precipitation agroecological zone of the Columbia Plateau’s dryland cropping region, near Moscow, Idaho. The site was managed with conventional (reduced) tillage. The crop rotation was spring barley, spring field peas, winter wheat, and spring wheat. Soils are silt loam mollisols including the Latahco, Thatuna, Southwick, and Larkin soil series. The site topography is sloping and is situated within the rolling hills of the Palouse region.

Chi, Jinshu [The Hong Kong University of Science a↗

Site Characterization of the Highest-Priority Geologic Formations for CO2 Storage in Wyoming

The project Site Characterization of the Highest-Priority Geologic Formations for CO2 Storage in Wyoming is one of 9 site characterization projects that were implemented as part of ARRA (American Recovery and Reinvestment Act). Data from this project was used to improve resolution of data in NATCARB in the area of study. Data related to this study has already been incorporated in NATCARB Atlas. The Wyoming Carbon Underground Storage Project (WY-CUSP) consisted of CO2 storage site characterization and evaluation, focusing on Wyoming’s most promising CO2 storage reservoirs (the Pennsylvanian Weber/Tensleep Sandstone and Mississippian Madison Limestone) and premier CO2 storage site (Rock Springs Uplift). Results from the WY-CUSP project suggest the two reservoirs could store up to 17,000 million tons of CO2. The WY-CUSP team drilled a stratigraphic test well and acquired a 3-D seismic survey covering 25 square miles of the Rock Springs Uplift site. The team retrieved 916 feet of core from the 12,810-foot-deep well, along with a complete log suite, borehole images, fluid samples, and other data. Project partners (1) provided continuous visual documentation of the core, including grain size, mineralogy, facies distribution, and porosity; (2) performed continuous permeability and velocity scans of selected reservoir intervals; and (3) chemically analyzed the fluid samples. WY-CUSP scientists integrated seismic attributes with observations from log suites, a VSP survey, core, fluid samples, and laboratory analyses, including continuous permeability scans. From these integrations, researchers constructed 3-D spatial distribution volumes of reservoir and seal properties that represent geological heterogeneity at the targeted CO2 storage site. The WY-CUSP team used this data to perform new CO2 plume migration simulations. Baker Hughes, Inc., completed a series of small-scale, in-situ water injectivity measurements. A database was formed when observations, analyses, and experiments from the stratigraphic test well were integrated. Correlation of these data allowed petrophysical parameters to be extrapolated from the test well out into the storage domain (5x5 mile 3-D seismic survey volume). This resulted in an improved, realistic understanding of performance assessments for potential CO2 storage scenarios. The WY-CUSP team worked on (1) improving CO2 storage resource estimates, (2) establishing long-term integrity and permanence of confining layers, (3) designing a profitable strategy for pressure management, and (4) evaluating the utilization of stored CO2 at the Rock Spring Uplift. Finally, Baker Hughes developed a microseismic baseline for the test site using in-bore geophones to complete field operations.

3-D seismic↗

Finchite, Sr(UO 2 ) 2 (V 2 O 8 )·5H 2 O, a new uranyl sorovanadate with the francevillite anion topology

Finchite (IMA2017-052), Sr(UO 2 ) 2 (V 2 O 8 )·5H 2 O, is the first uranium mineral known to contain essential Sr. The new mineral occurs as yellow-green blades up to ~10 µm in length in surface outcrops of the calcrete-type uranium deposit at Sulfur Springs Draw, Martin County, Texas, U.S.A. Crystals of finchite were subsequently discovered underground in the Pandora mine, La Sal, San Juan County, Utah, U.S.A., as diamond-shaped golden-yellow crystals reaching up to 1 mm. In this work, the crystal structure of finchite from both localities was determined using single-crystal X-ray diffraction and is orthorhombic, Pcan, with a = 10.363(6) Å, b = 8.498(5) Å, c = 16.250(9) Å, V = 1431.0(13) Å 3 , Z = 4 (R 1 = 0.0555) from Sulfur Springs Draw; and a = 10.3898(16), b = 8.5326(14), c = 16.3765(3) Å, V = 1451.8(4) Å 3 , Z = 4 (R 1 = 0.0600) from the Pandora mine. Electron-probe microanalysis provided the empirical formula (Sr 0.88 K 0.17 Ca 0.10 Mg 0.07 Al 0.03 Fe 0.02 ) Σ1.20 (UO 2 ) 2 (V 2.08 O 8 )·5H 2 O for crystals from Sulfur Springs Draw, and (Sr 0.50 Ca 0.28 Ba 0.22 K 0.05 ) Σ0.94 (U 0.99 O 2 ) 2 (V 2.01 O 8 )·5H 2 O for crystals from the Pandora mine, based on 17 O atoms per formula unit. The structure of finchite contains uranyl vanadate sheets based upon the francevillite topology. Finchite is a possible immobilization species for both uranium and the dangerous radionuclide 90 Sr because of the relative insolubility of uranyl vanadate minerals in water.

58 GEOSCIENCES↗

Discovering Blind Geothermal Systems in the Great Basin Region: An Integrated Geologic and Geophysical Approach for Establishing Geothermal Play Fairways: All Phases

Most geothermal resources in the Great Basin region of the western USA are blind, and thus the discovery of new commercial-grade systems requires synthesis of favorable characteristics for geothermal activity. The geothermal play fairway concept involves integration of multiple parameters indicative of geothermal activity to identify promising areas for new development. This project integrated multiple datasets to apply the play fairway concept and assess geothermal potential in a large region of the Great Basin in Nevada. It is therefore referred to as the Nevada play fairway project. This project was a strong collaborative effort between several organizations, led by the Nevada Bureau of Mines and Geology at the University of Nevada, Reno, but with key support from the U.S. Geological Survey, ATLAS Geosciences, Inc,, Hi-Q Geophysical, Inc., Lawrence Berkeley National Laboratory, Utah Geological Survey, and Innovative Geothermal Ltd. In Budget Period 1 of this project, available data for nine geologic, geochemical, and geophysical parameters were initially synthesized to produce a new detailed geothermal potential map of 96,000 km2 from west-central to eastern Nevada. These parameters were grouped into subsets and individually weighted to delineate rankings for local permeability, intermediate permeability, regional permeability, and thermal potential, which collectively defined geothermal play fairways (i.e., most likely locations for significant geothermal fluid flow). This initial work was aimed at reducing the risks in regional exploration and therefore facilitating discovery of new commercial-grade systems in blind settings, as well as in areas with surface expressions of geothermal activity. Budget Period 2 of the project involved detailed analysis of some of the most promising areas identified in Phase 1. Twenty-four highly prospective areas, including both known undeveloped systems and previously undiscovered potential blind systems, were identified for further analysis. After reconnaissance of these areas, five of the most promising sites were selected for detailed studies. Multiple techniques were employed in the detailed studies, including geologic mapping, shallow temperature surveys, gravity surveys, Lidar, geochemical studies, seismic reflection analysis, and 3D modeling. The goal of the detailed studies was to identify specific areas with the highest likelihood for high permeability and thermal fluids, such that drill sites could be targeted. Three main sets of predictive maps were generated for each detailed study area: 1) play fairway maps, 2) play fairway error maps, and 3) direct evidence maps. Local- and intermediate-scale permeability models were revised to reflect results of the detailed geologic, geophysical, and geochemical analyses. Budget Period 3 of the project involved more detailed geophysical analyses and temperature-gradient (TG) drilling in southeastern Gabbs Valley and northern Granite Springs Valley, deemed the two most promising sites, with the goal of providing preliminary validation of the play fairway methodology. In southeastern Gabbs Valley, the collocation of a favorable structural setting (displacement transfer zone and fault intersections), Quaternary faults, intersecting and terminating gravity gradients, magnetic low, shallow (2 m) temperature anomaly, low resistivity anomaly, and promising geothermometry from nearby water wells provided evidence for a blind system. Drilling of six TG holes defines an apparent geothermal system at this locality with temperatures as high as 124°C at 152 m. This system is blind, with no surface hot springs, fumaroles, or paleo-geothermal deposits. For northern Granite Springs Valley, a favorable structural setting (termination of a major Quaternary normal fault), terminating gravity gradient, magnetic gradient, newly discovered sinter deposits, nearby warm water wells, previously drilled TG holes in the vicinity, and promising geothermometry suggest a hidden system. Drilling of six new TG holes yields temperatures of ~96°C at ~250 m, suggesting the presence of a geothermal system. Major lessons learned in the course of this project include: 1) initially identified sites commonly include multiple favorable structural settings at a finer scale; 2) promising sites in Cenozoic basins cannot be recognized without detailed geophysical surveys; and 3) play fairway analysis should be refined as the exploration program vectors into the most promising sites and finer-scale data are acquired. In addition to producing copious amounts of data, this project resulted in 16 published papers, 10 abstracts, more than 40 presentations across the U.S. and abroad (including several keynote addresses), 2 Masters theses, and 7 media reports.

15 GEOTHERMAL ENERGY↗

Evaluation of a Surface Spill Operation to Return Adult Steelhead Overshoots Downstream of McNary Dam

This study, funded by the U.S. Army Corps of Engineers (USACE), was conducted by the Pacific Northwest National Laboratory to evaluate the efficacy of operating one Top Spill Weir (TSW) at McNary Dam outside the normal TSW operation dates for juvenile salmon passage. Of interest is whether the TSW is an effective downstream passage route for adult steelhead overshoots. Overshoots are fish which, having passed upstream at McNary Dam, must pass downstream to return to their natal stream to spawn. This report covers Fall (2019) and Spring (2020) study periods. The study design arranged the available 24 hours of TSW spill per week into weekly blocks with sub-blocks differentiated into day and night operations with TSW discharge periods of 4- and 8-hours duration. Hydroacoustic techniques were used to sample adult fish passage at the TSW and at turbine units 1 and 10. The experimental design contrasted TSW spill periods of differing duration and at different times of the day. The small number of fish detected passing the TSW, and the smaller number of fish detected passing the turbine units, were best suited to an ad hoc, exploratory approach to evaluating the effect of TSW spill. It is worthwhile to note that the operations data obtained for the fall study period had a greater than expected number of gaps and apparent anomalies that we believe were a result of how the data were aggregated. These problems are not particularly problematic for the present study, because the available data still provide a good indication of whether the TSW was operating at each point in time. TSW flows in both fall and spring data sets were able to be cleaned up using the established relationship between forebay elevation and TSW discharge rate. Additional cleanup of operations data would be needed, however, if more quantitative evaluation of dam-wide flow and passage relationships were needed. This study contrasted TSW spill periods of differing duration and at different times of the day. The small number of fish detected passing the TSW, and the smaller number of fish detected passing the turbine units were best suited to an ad hoc, exploratory approach to evaluating the effect of TSW spill. Spring adult steelhead passage numbers estimated using hydroacoustics were notably lower than during the fall study period, and that was consistent with our analysis of PIT tagged fish likely to be in the vicinity during each study period. Detections of fish in BlueView sampling areas upstream of the TSW and powerhouse were not correlated with detections of fish passing hydroacoustic sampling areas, which suggests that fish approaching the face of the dam can move around the forebay before passing. Other fish detected in the forebay in large numbers, such as shad, were able to be filtered out of steelhead passage counts and did not appear to be influencing hydroacoustic passage rate estimates. A pulse of passage at the initial TSW opening was weakly evident, but trends across 4- and 8-hour operational periods did not show a distinct decline in passage over time as TSW operation continued. Our findings do not indicate a reason to choose one 8-hour period over two 4-hour periods, or vice versa. This suggests that the duration of spill periods can be chosen based on operational or other considerations. Passage rates were consistently higher during the daytime TSW discharge periods, relative to nighttime TSW discharge periods. The experimental design of the current study used start times near dawn for day periods and near dusk for night periods.

59 BASIC BIOLOGICAL SCIENCES↗

Light Energy Transduction in Green Sulfur Bacteria

Green sulfur bacteria (GSB) are exquisitely adapted for growth at extraordinarily low light intensities. They are important primary producers of biomass in many anoxic environments, and they contribute significantly to the biogeochemical cycling of carbon, nitrogen, and sulfur on Earth. Green bacteria more generally share the property of using chlorosomes for light-harvesting, and these unusual organelles have many unique features. These include the presence of a monolayer lipid-protein envelope, self-assembling bacteriochlorophylls (BChl) in which pigment-pigment interactions predominate, and the presence of redox components ([2Fe-2S] ferredoxins and quinones) that play a role in regulating excitation energy transfer to the type-1 homodimeric reaction centers. The reaction centers of GSB are related to Photosystem I of cyanobacteria and higher plants but also exhibit several unique structural and functional features. The long-term objectives of this research program are to understand the structure, functions, and biogenesis of the chlorosomes, reaction centers, and electron transport chains that carry out the photochemical transduction of light energy into chemical energy in the model green sulfur bacterium, Chlorobaculum (formerly Chlorobium) tepidum. Over a period of 26 years, we characterized chlorosomes in detail. We identified the proteins in the chlorosome envelopes of diverse organisms, identified the nearest neighbors of those proteins, and characterized the chlorosomes of mutant strains lacking one to five of these proteins. After the genome sequence of Cba. tepidum became available, we identified all genes encoding enzymes for BChl a , BChl c/d/e/ƒ , and Chl a biosynthesis Cba. tepidum . We additionally identified all genes encoding enzymes for carotenoid biosynthesis. By constructing a bchQRU mutant strain that produces [Et, Me]-BChl d , together with collaborators who are specialists in solid-state NMR and cryo-electron microscopy, we solved the structure of the BChls in chlorosomes. Using similar methods and chlorosomes containing [Et, Me]-BChl c , we then showed that alternative structures were possible using the same syn-anti BChl dimer. The structures were refined by introducing spectroscopic data from single-chlorosome measurements. Over the course of this project, we sequenced the genomes of approximately twenty GSB strains, which provided important information for comparative analyses. Through analyses of metagenomic data from Mushroom and Octopus Springs in Yellowstone National Park, we identified a novel chlorophototroph belonging to the phylum Acidobacteriota. We successfully isolated an axenic culture of this organism. We characterized the photosynthetic apparatus of this bacterium, named Chloracidobacterium thermophilum, in significant detail, in particular its type-1, homodimeric reaction centers. Surprisingly, these reaction centers contain three types of Chls, BChl a , Chl a , and Zn-BChl a' . We showed that a dimer of Zn-BChl a' is the primary donor and Chl a the primary acceptor of electrons in this reaction center by using advanced spectroscopic techniques. We isolated eight additional strains of Chloracidobacterium spp. from Mushroom Spring and Rupite hot springs in Bulgaria. Comparative genomes showed that these represent three species, Cab. thermophilum , Cab. aggregatum , and Cab. validum . By applying comparative genomics, genetic, biochemical biophysical and physiological approaches to study green bacteria, we produced a wealth of new information about the remarkable light-harvesting and energy transduction capabilities of these poorly characterized microorganisms.

59 BASIC BIOLOGICAL SCIENCES↗

Peatland hydrology across scale: a probabilistic framework for confronting variability, heterogeneity, and uncertainty (Final Report)

Our project aimed to guide the representations of peatland hydrology and water-carbon feedbacks within Earth System Models, by improving process understanding and developing parsimonious models that elucidate the effects of hydroclimatic variability and spatial heterogeneity. Our research questions centered on the three key drivers of peatland hydrology: (1) seasonal and interannual hydroclimatic fluctuations, (2) spatial heterogeneity of peatland microtopography, and (3) hydrological connectivity across landscape units within a peatland watershed. Our analyses and model testing used existing long-term datasets within the Marcell Experimental Forest (MEF), with new data collected whenever necessary. To date, we have demonstrated the strong influence of water table elevations on the temperature sensitivity of CH 4 emissions, using a newly developed eddy covariance dataset spanning eleven years at MEF. Specifically, higher water tables dampen the increase in CH 4 emissions in the spring as well as their decrease in the fall, resulting in hysteresis. These results imply that any hydroclimatological changes in peatlands that shift seasonal water availability from winter to summer will increase annual CH 4 emissions, even if soil temperature remains unchanged. To further investigate water table elevation change within the peatland microtopography, we installed automated water table gauges across four bog-forest transects (the “lagg”) in two peatland watersheds at MEF, which are hotspots of intense biogeochemical activity. These measurements will give us new information about the extent of lagg expansion and contraction during snowmelt and high intensity rainfall events, as well as the directionality of water and nutrient flow into the bog from the surrounding forests. Finally, we investigated the hydrological connectivity across the peatland watershed complex during early spring – a critical period where water table is elevated from snowmelt – using extended hydrological records from MEF (e.g., snow and frost depths, water table elevations, streamflow). The importance of thermal and wintertime processes within the Energy Exascale Earth System Model (E3SM) was determined through sensitivity analyses. Results from data analyses show that (i) streamflow has decreased over decades likely due to increased evapotranspiration rates (despite no detectable trends in precipitation), (ii) spring streamflow generation is controlled by a sequence of fill-and-spill pathways from the snowpack to the stream through peatland water stores, and (iii) frost depth is a key explanatory variable for the timing and magnitude of streamflow. These results suggest that frost plays an important role in connecting surface water storage in peatlands to stream outlets, and that the hydrological connectivity across the peatland watershed complex can mediate the sensitivity of hydrological responses to climate variations.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of Foster Dam Juvenile Fish Passage, 2018 (Final Report)

This report presents the results of a fish passage study conducted by the Pacific Northwest National Laboratory (PNNL) for the U.S. Army Corps of Engineers Portland District (USACE) at Foster Dam (herein, Foster) during the spring (March–June) and fall (October–December) of 2018. The goal of this study was to provide biologists, engineers, resource managers, and regional decision-makers with information about passage of juvenile Chinook salmon and juvenile steelhead (or appropriate surrogates) through specific routes at Foster. The results of this study are intended to help facilitate decision-making regarding long-term measures for enhancing salmonid passage at Foster. Radio telemetry (RT) methods were instituted at low winter reservoir forebay elevation (low pool, 613 ft mean sea level (msl); spring 2018 and fall 2018) and high summer reservoir forebay elevation (high pool, 635 ft msl; late spring and early summer 2018) to accomplish the following objectives: I. Estimate the following passage metrics under typical operations (i.e., baseline conditions): a. Overall dam-passage survival and survival specific to each route of dam passage, calculated using two different methods: i. Cormack-Jolly-Seber (CJS) estimate: Probability of survival from dam passage to detection at the Primary Array, 19 river kilometers (rkm) downstream of Foster. ii. Virtual Release/Dead Fish Correction (ViRDCt) estimate: Corrects the bias that occurs from misidentifying fish that did not survive dam-passage as alive at the tailrace Egress Array, allowing an estimate of survival from dam passage to this array, 2.5 rkm downstream of Foster. b. Route distribution (passage proportions by route; also known as “passage efficiencies”). c. Efficiency metrics i. Dam-passage efficiency (DPE), the proportion of total fish passing the dam relative to the number of total fish detected in the near forebay of the dam and therefore available to pass. ii. Fish passage efficiency (FPE), the proportion of fish passing via a non-turbine route, relative to the number of total fish in the near forebay and available to pass. iii. Fish weir efficiency (FWE) and spill bay efficiency (SBE), the proportion of fish passing the weir or spill bays, respectively, relative to the total number of fish passing the dam. d. Reservoir residency time (time elapsed between release into reservoir and dam passage) and travel times through the system. II. Estimate efficiency and effectiveness of the new fish weir, compared to the turbines and the spillway. III. Under alternative operations, compare passage through each route (turbines, weir, spillway) using a block/treatment (on/off) design similar to the 2015 and 2016 studies. IV. Estimate efficiency of the new fish weir operating at a low level of discharge (< 500 cfs) and a high level of discharge (= 500 cfs), as well as dam passage survival at each weir discharge level. V. Evaluate survival and behavior of hatchery summer steelhead to wild surrogate winter steelhead for potential use of summer steelhead as a surrogate species winter steelhead. VI. Evaluate juvenile passage rates in the auxiliary water supply (AWS), forebay water supply (FWS), and hatchery water supply (HWS).

54 ENVIRONMENTAL SCIENCES↗