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At least 955 records · Page 53
All sourcesNASA NTRSDOE OSTI
NASA NTRS2001

Collaboration Between NASA Centers of Excellence on Autonomous System Software Development

Software for space systems flight operations has its roots in the early days of the space program when computer systems were incapable of supporting highly complex and flexible control logic. Control systems relied on fast data acquisition and supervisory control from a roomful of systems engineers on the ground. Even though computer hardware and software has become many orders of magnitude more capable, space systems have largely adhered to this original paradigm In an effort to break this mold, Kennedy Space Center (KSC) has invested in the development of model-based diagnosis and control applications for ten years having broad experience in both ground and spacecraft systems and software. KSC has now partnered with Ames Research Center (ARC), NASA's Center of Excellence in Information Technology, to create a new paradigm for the control of dynamic space systems. ARC has developed model-based diagnosis and intelligent planning software that enables spacecraft to handle most routine problems automatically and allocate resources in a flexible way to realize mission objectives. ARC demonstrated the utility of onboard diagnosis and planning with an experiment aboard Deep Space I in 1999. This paper highlights the software control system collaboration between KSC and ARC. KSC has developed a Mars In-situ Resource Utilization testbed based on the Reverse Water Gas Shift (RWGS) reaction. This plant, built in KSC's Applied Chemistry Laboratory, is capable of producing the large amount of Oxygen that would be needed to support a Human Mars Mission. KSC and ARC are cooperating to develop an autonomous, fault-tolerant control system for RWGS to meet the need for autonomy on deep space missions. The paper will also describe how the new system software paradigm will be applied to Vehicle Health Monitoring, tested on the new X vehicles and integrated into future launch processing systems.

Goodrich, Charles H.↗
DOE OSTI2021

GTP binding by Arabidopsis extra-large G protein 2 is not essential for its functions

The extra-large guanosine-5'-triphosphate (GTP)-binding protein 2, XLG2, is an unconventional Gα subunit of the Arabidopsis (Arabidopsis thaliana) heterotrimeric GTP-binding protein complex with a major role in plant defense. In vitro biochemical analyses and molecular dynamic simulations show that affinity of XLG2 for GTP is two orders of magnitude lower than that of the conventional Gα, AtGPA1. Here we tested the physiological relevance of GTP binding by XLG2. We generated an XLG2(T476N) variant with abolished GTP binding, as confirmed by in vitro GTPγS binding assay. Yeast three-hybrid, bimolecular fluorescence complementation, and split firefly-luciferase complementation assays revealed that the nucleotide-depleted XLG2(T476N) retained wild-type XLG2-like interactions with the Gβγ dimer and defense-related receptor-like kinases. Both wild-type and nucleotide-depleted XLG2(T476N) restored the defense responses against Fusarium oxysporum and Pseudomonas syringae compromised in the xlg2 xlg3 double mutant. Additionally, XLG2(T476N) was fully functional restoring stomatal density, root growth, and sensitivity to NaCl, but failed to complement impaired germination and vernalization-induced flowering. We conclude that XLG2 is able to function in a GTP-independent manner and discuss its possible mechanisms of action.

Plant Sciences↗
NASA NTRS2003

Control Modes of the ST7 Disturbance Reduction System Flight Validation Experiment

The Space Technology 7 experiment will perform an on-orbit system-level validation of two specific Disturbance Reduction System technologies: a gravitational reference sensor employing a free-floating test mass and a set of micro-Newton colloidal thrusters. The ST7 Disturbance Reduction System is designed to maintain the spacecraft s position with respect to a free-floating test mass to less than 10 nm/the square root of Hz over the frequency range of 1 to 30 mHz. This requirement will help ensure that the residual accelerations on the test masses (beyond gravitational acceleration) will be below the ST7 goal of 300 (1 + [f/3 mHz](sup 2)) pm/s(sup 2)/the square root of Hz. This paper presents the overall design and analysis of the spacecraft drag-free and attitude controllers being designed by NASA s Goddard Space Flight Center. These controllers close the loop between the GRS and the micro-Newton colloidal thrusters. The ST7 DRS comprises three control systems: the attitude control system to maintain a sun-pointing attitude, the drag free control to center the spacecraft about the test masses, and the test mass suspension control. There are five control modes in the operation of the ST7-DRS, starting from the attitude-only mode and leading to the challenging science mode. The design and analysis of each of the control modes are presented. An 18-DOF model is developed to capture the essential dynamics of the ST7-DRS package. It includes all rigid-body dynamics of the spacecraft and two test masses (three translations and three rotations for the spacecraft and each of the test masses). Actuation and measurement noise and major disturbance sources acting on the spacecraft and test masses are modeled.

Maghami, P. G.↗
NASA NTRS2011

Simulated Seasonal Spatio-Temporal Patterns of Soil Moisture, Temperature, and Net Radiation in a Deciduous Forest

The temperature and moisture regimes in a forest are key components in the forest ecosystem dynamics. Observations and studies indicate that the internal temperature distribution and moisture content of the tree influence not only growth and development, but onset and cessation of cambial activity [1], resistance to insect predation[2], and even affect the population dynamics of the insects [3]. Moreover, temperature directly affects the uptake and metabolism of population from the soil into the tree tissue [4]. Additional studies show that soil and atmospheric temperatures are significant parameters that limit the growth of trees and impose treeline elevation limitation [5]. Directional thermal infrared radiance effects have long been observed in natural backgrounds [6]. In earlier work, we illustrated the use of physically-based models to simulate directional effects in thermal imaging [7-8]. In this paper, we illustrated the use of physically-based models to simulate directional effects in thermal, and net radiation in a adeciduous forest using our recently developed three-dimensional, macro-scale computational tool that simulates the heat and mass transfer interaction in a soil-root-stem systems (SRSS). The SRSS model includes the coupling of existing heat and mass transport tools to stimulate the diurnal internal and external temperatures, internal fluid flow and moisture distribution, and heat flow in the system.

Ballard, Jerrell R., Jr.↗
NASA NTRS1992

Momentumless coalescence of drops

The dynamics of mixing and satellite drop formation following the coalescence of initially stationary low-viscosity drops of the same liquid has been investigated using immiscible systems. The main parameters of interest are the drop sizes, the drop viscosity and the host viscosity. For drops of equal sizes there is no mixing following coalescence, which is consistent with that first demonstrated on the Skylab. However, for drops of unequal sizes there is considerable mixing with the smaller drop penetrating the larger drop as a vortex. In the extreme case of coalescence of a small drop with the bulk of the same liquid at a flat interface, the measured penetration depth is found to be proportional to the 5/4 th power of the drop diameter and inversely proportional to the square root of drop viscosity. When the drop and host viscosities are comparable, drop penetration is prematurely terminated by the formation of a satellite drop. However, when the drop diameter ratio (large to small) is below a critical number, satellite drop formation is inhibited and coalescence goes to completion. The influence of drop-host viscosity ratio on this critical diameter ratio has been examined.

Anilkumar, A. V.↗
NASA NTRS2019

Understanding the Impacts of Soil Moisture Initial Conditions on NWP in the Context of Land-Atmosphere Coupling

The role of soil moisture in NWP has gained more attention in recent years, as studies have demonstrated impacts of land surface states on ambient weather from diurnal to seasonal scales. However, soil moisture initialization approaches in coupled models remain quite diverse in terms of their complexity and observational roots, while assessment using bulk forecast statistics can be simplistic and misleading. In this study, a suite of soil moisture initialization approaches is used to generate short-term coupled forecasts over the U.S. Southern Great Plains using NASA’s Land Information System (LIS) and NASA Unified WRF (NU-WRF) modeling systems. This includes a wide range of currently used initialization approaches, including soil moisture derived from ‘off-the-shelf’ products such as atmospheric models and land data assimilation systems, high-resolution land surface model spinups, and satellite-based soil moisture products from SMAP. Results indicate that the spread across initialization approaches can be quite large in terms of soil moisture conditions and spatial resolution, and that SMAP performs well in terms of heterogeneity and temporal dynamics when compared against high resolution land surface model and in-situ soil moisture estimates. Case studies are analyzed using the local land-atmosphere coupling (LoCo) framework that relies on integrated assessment of soil moisture, surface flux, boundary layer, and ambient weather, with results highlighting the critical role of inherent model background biases. In addition, simultaneous assessment of land vs. atmospheric initial conditions in an integrated, process-level fashion can help address the question of whether improvements in traditional NWP verification statistics are achieved for the right reasons.

Southern Great Plains↗
DOE OSTI2023

Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage

Phyllosphere exudates create specialized microhabitats that shape microbial community diversity. We explored the microbiome associated with two sorghum phyllosphere exudates, the epicuticular wax and aerial root mucilage. We assessed the microbiome associated with the wax from sorghum plants over two growth stages, and the root mucilage additionally from nitrogen-fertilized and non-fertilized plants. In parallel, we isolated and characterized hundreds of bacteria from wax and mucilage, and integrated data from cultivation-independent and cultivation-dependent approaches to gain insights into exudate diversity and bacterial phenotypes. We found that Sphingomonadaceae and Rhizobiaceae families were the major taxa in the wax regardless of water availability and plant developmental stage to plants. The cultivation-independent mucilage-associated bacterial microbiome contained Erwiniaceae, Flavobacteriaceae, Rhizobiaceae, Pseudomonadaceae, Sphingomonadaceae, and its structure was strongly influenced by sorghum development but only modestly influenced by fertilization. In contrast, the fungal community structure of mucilage was strongly affected by the year of sampling but not by fertilization or plant developmental stage, suggesting a decoupling of fungal-bacterial dynamics in the mucilage. Our bacterial isolate collection from wax and mucilage had several isolates that matched 100% to detected amplicon sequence variants, and were enriched on media that selected for phenotypes including phosphate solubilization, putative diazotrophy, resistance to desiccation, capability to grow on methanol as a carbon source, and ability to grow in the presence of linalool and β-caryophyllene (terpenes in sorghum wax). This work expands our understanding of the microbiome of phyllosphere exudates and supports our long-term goal to translate microbiome research to support sorghum cultivation.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1990

Robust control of systems with real parameter uncertainty and unmodelled dynamics

Two significant contributions have been made during this research period in the research 'Robust Control of Systems with Real Parameter Uncertainty and Unmodelled Dynamics' under NASA Research Grant NAG-1-1102. They are: (1) a fast algorithm for computing the optimal H(sub infinity) norm for the four-block, the two block, or the one-block optimal H(sub infinity) optimization problem; and (2) a construction of an optimal H infinity controller without numerical difficulty. In using GD (Glover and Doyle) or DGKF (Doyle, Glover, Khargonekar, and Francis) approach to solve the standard H infinity norm which required bisection search. In this research period, we developed a very fast iterative algorithm for this computation. Our algorithm was developed based on hyperbolic interpolations which is much faster than any existing algorithm. The lower bound of the parameter, gamma, in the H infinity Riccati equation for solution existence is shown to be the square root of the supremum over all frequencies of the maximum eigenvalue of a given transfer matrix which can be computed easily. The lower band of gamma such that the H infinity Riccati equation has positive semidefinite solution can be also obtained by hyperbolic interpolation search. Another significant result in this research period is the elimination of the numerical difficulties arising in the construction of an optimal H infinity controller by directly applying the Glover and Doyle's state-space formulas. With the fast iterative algorithm for the computation of the optimal H infinity norm and the reliable construction of an optimal H infinity controller, we are ready to apply these tools in the design of robust controllers for the systems with unmodelled uncertainties. These tools will be also very useful when we consider systems with structured uncertainties.

Chang, Bor-Chin↗
NASA NTRS1999

Mesoscale Simulations of a Florida Sea Breeze Using the PLACE Land Surface Model Coupled to a 1.5-Order Turbulence Parameterization

A sophisticated land-surface model, PLACE, the Parameterization for Land Atmospheric Convective Exchange, has been coupled to a 1.5-order turbulent kinetic energy (TKE) turbulence sub-model. Both have been incorporated into the Penn State/National Center for Atmospheric Research (PSU/NCAR) mesoscale model MM5. Such model improvements should have their greatest effect in conditions where surface contrasts dominate over dynamic processes, such as the simulation of warm-season, convective events. A validation study used the newly coupled model, MM5 TKE-PLACE, to simulate the evolution of Florida sea-breeze moist convection during the Convection and Precipitation Electrification Experiment (CaPE). Overall, eight simulations tested the sensitivity of the MM5 model to combinations of the new and default model physics, and initialization of soil moisture and temperature. The TKE-PLACE model produced more realistic surface sensible heat flux, lower biases for surface variables, more realistic rainfall, and cloud cover than the default model. Of the 8 simulations with different factors (i.e., model physics or initialization), TKE-PLACE compared very well when each simulation was ranked in terms of biases of the surface variables and rainfall, and percent and root mean square of cloud cover. A factor separation analysis showed that a successful simulation required the inclusion of a multi-layered, land surface soil vegetation model, realistic initial soil moisture, and higher order closure of the planetary boundary layer (PBL). These were needed to realistically model the effect of individual, joint, and synergistic contributions from the land surface and PBL on the CAPE sea-breeze, Lake Okeechobee lake breeze, and moist convection.

Lynn, Barry H.↗
NASA NTRS2004

Induced Power of the Helicopter Rotor

A simplified rotor model was used to explore fundamental behavior of lifting rotor induced power at moderate and high advance ratios. Several rotor inflow theories, including dynamic inflow theory and prescribed-wake vortex theory, together with idealized notional airfoil stall models were employed. A number of unusual results were encountered at high advance ratios including trim control reversal and multiple trim solutions. Significant increases in rotor induced power (torque) above the ideal minimum were observed for moderately high advance ratio. Very high induced power was observed near and above unity advance ratio. The results were sensitive to the stall characteristics of the airfoil models used. An equivalent wing analysis was developed to determine induced power from Prandtl lifting line theory and help interpret the rotor induced power behavior in terms of the spanwise airload distribution. The equivalent wing approach was successful in capturing the principal variations of induced power for different configurations and operating conditions. The effects blade root cutout were found to have a significant effect on rotor trim and induced power at high advance ratios.

Ormiston, Robert A.↗
NASA NTRS2004

Space-Based Telemetry And Range Safety Flight Demonstration #1

The basic ability of STARS to maintain a satellite communications link with TDRSS satellites during dynamic aircraft flights was successfully demonstrated during FD 1. The Range Safety and Range User systems' link margins were measured. The ability to acquire/reacquire and maintain lock between a high-dynamic vehicle and a satellite-based system was demonstrated. The Range Safety system simultaneously received and processed command links from space and ground transmitters and provided near real-time Range Safety telemetry to DFRC, which then sent it in near real time to KSC, GSFC, and WFF for monitoring. The GPS receiver maintained track except during extremely dynamic maneuvers. The Range User system sent data at three different data rates. There were excellent cooperation and support from the different Centers, contractors, and Ranges. A large amount of data was recorded and extensive post-flight analysis was performed. The Range User TDRSS link margin met or exceeded the predicted performance at three different data rates. The Range Safety launch-head link margins generally agreed with the predicted performance. The UPS positions and velocities agreed with those from tracking radar to within about 20 m and a few rn/s. The link margins for the Range Safety TDRSS telemetry link were less than expected. The link margin for one TDRSS command link LPT channel was occasionally much less than the other. Additional post-flight testing has yet to identify the root causes of these results. There were many lessons learned from this first set of test flights. The most important one is that more time and testing are needed for each step to deal with the inevitable problems. It is vital that these lessons be among the primary areas of study that will carry over from FD#1 to FD#2, which is currently scheduled for early FY05 at DFRC and will use a specially designed Ku-band phased array antenna for the Range User system. The next series of flight demonstrations scheduled for late 2004 at DFRC will incorporate many lessons learned from FD#1. A specially designed Ku-band phased array antenna will be used with the Range User system. A test flight on a hypersonic vehicle is planned by the end of 2006.

Demspm. Erol↗
NASA NTRS2022

Estimating Species-Specific Leaf Area Index and Basal Area Using Optical and SAR Remote Sensing Data in Acadian Mixed Spruce-Fir Forests, USA

This study combined Sentinel-1 synthetic aperture radar (SAR), Sentinel-2 multispectral, and site variable datasets to model leaf area index (LAI) and basal area per ha (BAPH) of two economically important tree species in Northeast, USA; red spruce (Picea rubens Sarg.; RS), and balsam fir (Abies balsamea (L.) Mill.; BF). We used Random Forest (RF), and Multi-Layer Perceptron (MLP) algorithms for LAI and BAPH modeling. The results showed that RF outperformed MLP by reducing the normalized root mean square error (nRMSE) by 0.01 and 0.06 for LAI and BAPH, respectively. The final variables selected for modeling of both LAI and BAPH indicated the superiority of Sentinel-2 variables over the Sentinel-1 SAR with minor contributions of site variables (mainly elevation). The red-edge spectral vegetation indices played a significant role in both LAI and BAPH estimation. We attained the lowest nRMSEs of 0.12, and 0.16 for the final LAI model of RS, and BF, respectively using Sentinel-2 and site variables. The lowest nRMSE for both RS and BF BAPH models was 0.12. As RS and BF are the primary host species for a cyclically occurring and most destructive pest of the region, eastern spruce budworm (Choristoneura fumiferana; SBW), these estimations will be useful to evaluate SBW dynamics in the region.

Forest inventory↗
NASA NTRS2023

Remotely Sensed Soil Moisture Can Capture Dynamics Relevant to Plant Water Uptake

A frequently expressed viewpoint across the Earth science community is that global soil moisture estimates from satellite L-band (1.4 GHz) measurements represent moisture only in a shallow surface layer (0–5 cm) and consequently are of limited value for studying global terrestrial ecosystems because plants use water from deeper rootzones. Using this argumentation, many observation-based land surface studies avoid satellite-observed soil moisture. Here, based on peer-reviewed literature across several fields, we argue that such a viewpoint is overly limiting for two reasons. First, microwave soil emission depth considerations and statistical considerations of vertically correlated soil moisture information together indicate that L-band measurements carry information about soil moisture extending below the commonly referenced 5 cm in many conditions. However, spatial variations of effective depths of representation remain uncertain. Second, in reviewing isotopic tracer field studies of plant water uptake, we find a prevalence of vegetation that primarily draws moisture from these upper soil layers. This is especially true for grasslands and croplands covering more than a third of global vegetated surfaces. Even some deeper-rooted species (i.e., shrubs and trees) preferentially or seasonally draw water from the upper soil layers. Therefore, L-band satellite soil moisture estimates are more relevant to global vegetation water uptake than commonly appreciated (i.e., relevant beyond only shallow soil processes like soil evaporation). Our commentary encourages the application of satellite soil moisture across a broader range of terrestrial hydrosphere and biosphere studies while urging more rigorous estimates of its effective depth of representation.

Andrew F. Feldman↗
DOE OSTI2018

Elevated [CO2] changes soil organic matter composition and substrate diversity in an arid ecosystem

Little is known about how rising atmospheric [CO2] will impact long-term plant biomass or the dynamics of soil organic matter (SOM) in arid ecosystems. Evans et al. (1) reported higher soil organic carbon (SOC) and total nitrogen (N) concentrations following 10 years exposure to elevated atmospheric [CO2] at the Nevada Desert Free-Air-Carbon dioxide-Enrichment (FACE) Facility (NDFF). In this study, we investigated potential mechanisms that resulted in increased SOC and total N accumulation and SOM stabilization using high resolution mass spectrometry. Samples were collected from soil profiles to 1 m in depth with a 0.2 m increment under the dominant evergreen shrub Larrea tridentata. The differences in the molecular composition and diversity of SOM were more evident in surface soils and declined with depth, and were consistent with higher SOC and total N concentrations under elevated than ambient [CO2]. Our molecular analysis also suggested increased root exudation and/or microbial necromass from stabilization of labile C and N contributed to SOM and N stocks. Increased microbial activity and metabolism under elevated [CO2] compared to ambient treatments suggest that elevated [CO2] altered microbial carbon use patterns, reflecting changes in the quality and quantity of SOC inputs. We found that plant-derived compounds were primary substrates for microbial activity under elevated [CO2] and microbial products were the main constituents of stabilized SOM. Our results suggest that arid ecosystems are a potential large C sink under elevated [CO2], given the extensive coverage of the land surface, and that labile compounds are transformed to stable SOM via microbial processes. Arid systems are limited by water, and thus may have a different C storage potential under changing climates than other ecosystems that are limited by nitrogen or phosphorus.

Tfaily, Malak M.↗
DOE OSTI2024

Minimizing the diffusivity difference between vacancies and interstitials in multi-principal element alloys

Interstitial atoms usually diffuse much faster than vacancies, which is often the root cause for the ineffective recombination of point defects in metals under irradiation. Here, via ab initio modeling of single-defect diffusion behavior in the equiatomic NiCoCrFe(Pd) alloy, we demonstrate an alloy design strategy that can reduce the diffusivity difference between the two types of point defects. The two diffusivities become almost equal after substituting the NiCoCrFe base alloy with Pd. The underlying mechanism is that Pd, with a much larger atomic size (hence larger compressibility) than the rest of the constituents, not only heightens the activation energy barrier ( E a ) for interstitial motion by narrowing the diffusion channels but simultaneously also reduces E a for vacancies due to less energy penalty required for bond length change between the initial and the saddle states. Our findings have a broad implication that the dynamics of point defects can be manipulated by taking advantage of the atomic size disparity, to facilitate point-defect annihilation that suppresses void formation and swelling, thereby improving radiation tolerance.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Deep Analysis Net with Causal Embedding for Coal-fired Power Plant Fault Detection and Diagnosis (DANCE4CFDD)

Fault detection and diagnosis is critical to power plant operation to ensure attaining high reliability while reducing operation cost. As more renewable power is introduced to the power grid, traditional fossil power plants take on the extra burden of excessive load cycling to compensate the generation variability from renewable power. Such load cycling will pose more reliability challenges to power plant operation. There are a number of challenges faced by today’s asset health management system in coal- fired (or gas) power plants: 1) high-dimensional nonlinear interaction among multiple time series measurements; 2) high measurement variance induced by operational conditions/modes; 3) variation among asset types and plant configurations; and 4) a small number of faulty events to learn from. To cope with these challenges, today’s fielded asset health management systems rely heavily on manual efforts from domain experts and hand-crafted features or rules based on domain knowledge. Despite its role in plant reliability, such a practice is costly and hinders its scalability and sustainability, particularly when a plant undergoes modifications. The objective of this project is to develop a novel end-to-end AI learning system that is trainable (i.e., the AI representation of a complex system behavior can be directly learned from properly labeled data) for accurate fault detection and root cause analysis. The ability to create a fault detection model directly from time series could alleviate the efforts associated with today’s asset management solution development. In the course of this project, we have achieved the following: Created an AI model development environment incorporating state-of-the-art neural network architectures for rapid model development and evaluation; Developed novel learning strategies for training of fault detection model; Developed special-purpose neural network architecture embedded with variable association graph aiming for better interpretability; Developed a learning strategy to leverage a small number of faulty events for enhanced fault detection capability; Conducted detailed experimental study based on public benchmark datasets and demonstrated the effectiveness of the proposed solution; and Validated the developed system with data from both a coal-fired plant boiler dynamic simulation model and real-world coal-fired power plant covering multiple asset and fault types. Overall, the project attained a technology readiness level of TRL 5 from TRL 2 at the beginning of the project.

20 FOSSIL-FUELED POWER PLANTS↗
NASA NTRS1988

Digital active control law synthesis for aeroservoelastic systems

This paper presents a formulation for synthesis of digital active control laws for aeroservoelastic systems, which are typically modeled by large order equations in order to accurately represent the rigid and flexible body modes, unsteady aerodynamic forces, actuator dynamics, and gust spectra. The control law is expected to satisfy multiple design requirements on the dynamic loads, responses, actuator deflection and rate limitations, as well as maintain certain stability margins, yet should be simple enough to be implemented by an onboard digital microprocessor. The synthesis procedure minimizes a linear quadratic Gaussian type cost function, by updating selected free parameters of the control law, while satisfying a set of inequality constraints on the design loads, responses and stability margins. A stable classical control law or an estimator based full or reduced order control law can be used as an initial design starting point. The gradients of the cost function and the constraints, with respect to the digital control law design variables are derived analytically, to facilitate rapid convergence. Selected design responses can be treated as constraints instead of lumping them into the cost function, in order to satisfy individual root-mean-square load and response limitations. Constraints are also imposed on the minimum singular value requirements for stability robustness improvement.

Mukhopadhyay, Vivekananda↗
DOE OSTI2025

BONCAT-Live for isolation and cultivation of active environmental bacteria

In diverse environments, microbes drive a myriad of processes, from geochemical and nutrient cycling to interspecies interactions, including associations with plants and animals. Their physiological state is dynamic and impacted by abiotic and biotic conditions, responding to environmental fluctuations by changes in cellular metabolism, according to their genetic potential. Molecular, cellular, and genomic approaches can identify and measure microbial responses and adaptation to environmental changes in native communities. However, isolating individual microbial cells that respond to specific changes for cultivation has been difficult. To address this, we implemented a novel bacterial isolation approach (BONCAT-Live) by integrating bio-orthogonal non-canonical amino acid tagging (BONCAT) in diverse native communities, with isolation and cultivation of cells responding to specific stimuli, at different time scales. In frozen Arctic permafrost samples, we identified and isolated dormant bacteria that become active after thawing under native or nutrient-enriched conditions. From the Populus tree rhizosphere, we isolated strains that thrive under high concentrations of root exudates that act as defense compounds and nutrients. In the human microbiome, we identified and isolated bacteria that rapidly proliferated when exposed to metabolites provided by the host or other co-occurring microbes. Further characterization of isolated bacterial strains will provide opportunities for in-depth determination of how these microbes adapt to changes in their environments, individually and as part of model communities.

Analytical Methods↗